LOC110522121 (gja10)


Basic Information

Item Value
gene id LOC110522121
gene name gja10
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 13047347 ~ 13049135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600245.2
ATGGGGGATTGGAACTTGTTGGGGAGCATCTTAGAAGAGGTACATATTCATTCAACCATCGTGGGAAAAATCTGGCTAACCATCCTTTTTATATTCCGGATGCTCGTTCTTGGTGTGGCAGCAGAGGATGTGTGGGACGATGAGCAGAGTGAGTTTGTGTGCAACACGGACCAGCCTGGGTGTAAGAACGTGTGCTACGACGATGCATTCCCCATTTCTCTTATCCGATACTGGGTGTTACAAATCATTTTcgtgtcctctccctctctggtatACATGGGACATGCACTGTACCGTTTGAGGGCCCTTGAAAAAGAGAGACACAAGAAAAAAGCCTTCCTGAAAGCGGAGCTAGAGGGCGCTGAGCCCGTTCacgaggacagacagaggatagagagggagctGAGGAAGCTGGAGGAACAGAAGAGAGTAAGGAAAGCTCCACTCAGGGGCTCCTTGCTGCGCACATATGTTTTCCATATCTTGACGAGGTCAGTGGTGGAGGTTGGCTTCATAGTGGGACAATATGTGCTGTACGGAGTTGGACTGGATCCTTTGTACAAATGTGAGAGATTGCCTTGCCCGAACAGTGTGGATTGCTTTGTGTCCAGACCAACTGAGAAGAACATTTTCATGATCTTCATGCTCGTCATCGCTGGGGTTTCTTTGTTCTTGAATCTCCTCGAGATATTCCACCTGGGAGTGAAGAAAGTCAAACAAAGTCTGTATGGAAATAAAGGTACAGATGACGAAAGCTTATTAGTGTTCAGGTCCAAGAAAAACTCCATGGTCCAGCAGGTGTGTGTCCTCACAAACTCATCACCCCAAAAGATGATGCAACTCACTCAGACGGCCTACACAATGGTCCCTAACAGCCACGTGGATGCTATCCCCTTGTACCTGCATTCGGTAGCTCCTCACAACGATAGTGGTGGCACCAACGACTCAGAGCAGTACCTCAGACAGACTGAGCTCCAGTCCCTGCGACAGCTGAGGACTGTGGAGCACCActacaccctggaccagaggaACCACTCATGCAGCAGTGATGACTCCAACGGGCCTAAAGGCTCATGCCATCCCAGGCACGGCGGAGCACAGCCACGGCCTTCCCTAATGGCCAGCCATATGGAGATACCAGCAGCCCTGTGGAACCAGCTACGCAAGCAGAGCCGGGTCAGCGCTCTGCAGGATTACAGTGACATGAGTGATTCACCTGACAGTGGTCACTATCCCACGGGGAGGAAGGCTAGTTTCATGTCCCGAGGACTCTCTCAGACCAACCTGGACAGTCCTTCTGATAGCCCGAACTCCGGGAGTGGGACGGACACAGAGGCCAAGCGTATCGCCCAAGGAGAGAGCCCACCTATGACCCCGCCTCCAGCCAGTGGACGAAGAATGTCAATGAGCATGATTCTGGAACTGTCTTCAATCATGAAAAAGTGAGAACTGGCTGAGGGACCAGAAGGATCTGGGGACACTGATTACGAAGCAACATTCCCCTTCTAATTGCCTAATTGTATTCATAATAACATATGTATTGTGGATGAGCAGTAAACGCATTAGTAtagttacactgaacaaaaatagaaatgtatcatgcaattttactgagttacagttaacataaggacatcagtcaattgatagaaa

Function

symbol description
gja10 Predicted to enable gap junction channel activity. Predicted to be involved in cell-cell signaling. Predicted to act upstream of or within detection of light stimulus involved in visual perception; gamete generation; and synapse assembly. Predicted to be located in gap junction. Predicted to be part of connexin complex.

NR:

description
gap junction alpha-10 protein-like

GO: NA

KEGG:

id description
K07631 GJA10; gap junction alpha-10 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600245.2 True 1653 mRNA 0.49 2 13047347 13049135

Neighbor

gene id symbol gene type direction distance location
LOC110522103 casp8ap2 coding upstream 1684 13034144 ~ 13045663 (+)
LOC110521046 LOC106607715 coding upstream 65755 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 coding upstream 234970 12800778 ~ 12812377 (+)
pnrc1 pnrc1 coding upstream 249236 12794904 ~ 12798111 (+)
LOC110522111 LOC106607707 coding upstream 466298 12574316 ~ 12581049 (+)
LOC110520969 fut9 coding downstream 735579 13784714 ~ 13785790 (+)
LOC110522126 LOC106607723 coding downstream 742849 13791984 ~ 13801419 (+)
LOC110522131 LOC106607727 coding downstream 859184 13908319 ~ 13914582 (+)
LOC110522133 LOC106607729 coding downstream 885457 13934592 ~ 13954337 (+)
LOC110522134 LOC106607731 coding downstream 1015209 14064344 ~ 14131367 (+)
G321219 lyrm2 non-coding upstream 65017 12981778 ~ 12982330 (+)
G321330 NA non-coding upstream 73470 12973675 ~ 12973877 (+)
G321328 NA non-coding upstream 78038 12969090 ~ 12969309 (+)
G321323 NA non-coding upstream 81138 12965950 ~ 12966209 (+)
G321256 LOC101472980 non-coding upstream 192761 12853920 ~ 12854586 (+)
G321413 NA non-coding downstream 59820 13108955 ~ 13109508 (+)
G321422 NA non-coding downstream 69593 13118728 ~ 13119147 (+)
G321423 NA non-coding downstream 70153 13119288 ~ 13119615 (+)
G321424 NA non-coding downstream 70525 13119660 ~ 13119874 (+)
G321425 NA non-coding downstream 71064 13120199 ~ 13120439 (+)
LOC110522117 smim8 other upstream 498233 12548411 ~ 12549119 (+)
LOC110522079 LOC106607678 other upstream 1669591 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 3583850 9447091 ~ 9472617 (+)
G321447 NA other downstream 93812 13142947 ~ 13143443 (+)
G322645 NA other downstream 801152 13850287 ~ 13885503 (+)
G325389 fabp7 other downstream 3386118 16435253 ~ 16436882 (+)
G327705 NA other downstream 5215155 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 5378019 18427154 ~ 18428907 (+)

Expression


Co-expression Network