LOC110522135 (prs27)


Basic Information

Item Value
gene id LOC110522135
gene name prs27
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 14138716 ~ 14153769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975460.1
acctcctgtggtacatACCTCCTCCAACCAAAGGTATTTTaaatacaggacacacacaaaGCCGTAGCAGCTAATAGGATGGAGTCGGGGTGGGTATTGTGTGCTGTTGTATTTGCGTTGACCTGCATGGGAAAAGgtggcCATTCACAGGCAAATGTGTGTGGCATTGCTTCTCTCAACACAAAGATTGTCGGGGGTCAGGCTGCAGTTGCAGGTAGCTGGCCATGGCAGGCCAGTCTGCACCGCTCCAACCGCCATTTTTGTGGAGGCTCCCTTATCAACAAAGAGTGGGTGCTGACTGCCGCTCACTGCTTCCCCAGCACCAGCACATCCGGCCTGCTTGTCTACCTGGGCCGGCAGAATCAGCAAAGCATAAACTCCAACGAGGTATCCCAAACGGTCTCTCAGATCACCCGCCACCTGAACTACAACAGTGCAACCAGCGACAATGACATATGTTTGCTGAAGCTCTCATCACCTGTCACCTTCACTGACTACATCCAGCCGGTCTGCCTGGCAGCAGTGGGCAGCACCtactacactgacactactaGCTGGGTCACCGGATGGGGCGATATCAATAGTGGTGTGCCCCTTCCCTCACCCGGGACCCTACAGGAGGTGACTGTGCCGGTAGTGGGGAACAGGAAGTGTAACTGTCTCTATACTGGATTTAGTTCAATCACAAACAACATGATCTGTGCTGGTCTACTGAGTGGAGGAAAGGATTCCTGTCAGGGAGACTCCGGGGGGCCAATTGTGAGCAAACAGGGTCTGGTCTGGATCCAGTCTGGGGTTGTTAGTTTCGGAAAAGGCTGTGCCGAAGCAAATTTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCACTGACATGCCAGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGATCTCAATGTCACCTGTAATGCACTGTCCAGTGGGGCCACACTCTTCTCCTTTTCTcatctttctctatctcttccAATAGAGGACACACTACAAgagaagaggaccaaagtgcagcatggtggcCATTCACAGGCAAATGTGTGTGGCATTGCTTCTCTCAACACAAAGATTGTCGGGGGTCAGGCTGCAGTTGCAGGTAGCTGGCCATGGCAGGCCAGTCTGCACCGCTCCAACCGCCATTTTTGTGGAGGCTCCCTTATCAACAAAGAGTGGGTGCTGACTGCCGCTCACTGCTTCCCCAGCACCAGCACATCCGGCCTGCTTGTCTACCTGGGCCGGCAGAATCAGCAAAGCATAAACTCCAACGAGGTATCCCAAACGGTCTCTCAGATCACCCGCCACCTGAACTACAACAGTGCAACCAGCGACAATGACATATGTTTGCTGAAGCTCTCATCACCTGTCACCTTCACTGACTACATCCAGCCGGTCTGCCTGGCAGCAGTGGGCAGCACCtactacactgacactactaGCTGGGTCACCGGATGGGGCGATATCAATAGTGGTGTGCCCCTTCCCTCACCCGGGACCCTACAGGAGGTGACTGTGCCGGTAGTGGGGAACAGGAAGTGTAACTGTCTCTATACTGGATTTAGTTCAATCACAAACAACATGATCTGTGCTGGTCTACTGAGTGGAGGAAAGGATTCTTGTCAGGGAGACTCCGGGGGGCCAATTGTGAGCAAACAGGGTCTGGTCTGGATCCAGTCTGGGGTTGTTAGTTTTGGAAAAGGCTGTGCCGAAGCAAATTTCCCAGGAGTGTACACCAGAGTGTCCCAGTACCAGACCTGGATCAACAGCCAGATCAGCACTGACATGCCAGGCTTTGTCACCTTCTCCTCCAGTGGGACTGACTCTGATCTCAATGTCACCTGTAATGCACTGTCCAGTGGGGCCacactcttctccctctctccttttctcgtCTTTCTCTATCTCTTCCAATAG
>TU366080
ctctctccaccaggtggcCATTCACAGGCAAATGTGTGTGGCATTGCTTCTCTCAACACAAAGATTGTCGGGGGTCAGGCTGCAGTTGCAGGTAGCTGGCCATGGCAGGCCAGTCTGCACCGCTCCAACCGCCATTTTTGTGGAGGCTCCCTTATCAACAAAGAGTGGGTGCTGACTGCCGCTCACTGCTTCCCCAGCACCAGCACATCCGGCCTGCTTGTCTACCTGGGCCGGCAGAATCAGCAAAGCATAAACTCCAACGAGGTATCCCAAACGGTCTCTCAGATCACCCGCCACCTGAACTACAACAGTGCAACCAGCGACAATGACATATGTTTGCTGAAGCTCTCATCACCTGTCACCTTCACTGACTACATCCAGCCGGTCTGCCTGGCAGCAGTGGGCAGCACCtactacactgacactactaGCTGGGTCACCGGATGGGGCGATATCAATAGTGGTGGTGAGATCTGATTGTCC

Function

NR:

description
serine protease 27-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975460.1 False 1953 mRNA 0.53 12 14138716 14153769
TU366080 True 483 lncRNA 0.55 4 14139644 14148943

Neighbor

gene id symbol gene type direction distance location
LOC110522132 LOC106607728 coding downstream 221721 13858184 ~ 13916995 (-)
dse LOC106607725 coding downstream 280542 13829056 ~ 13858174 (-)
LOC110522128 LOC106607726 coding downstream 311218 13825800 ~ 13827498 (-)
LOC110522127 LOC106607724 coding downstream 316805 13809748 ~ 13821911 (-)
LOC110522125 epha7 coding downstream 491449 13572893 ~ 13647267 (-)
LOC110522136 prs27 coding upstream 11363 14165132 ~ 14174146 (-)
LOC118964438 prs27 coding upstream 31327 14185096 ~ 14187192 (-)
LOC110522138 LOC106607732 coding upstream 69239 14223008 ~ 14226550 (-)
LOC110522143 NA coding upstream 327556 14481325 ~ 14486331 (-)
ccn6 wisp3 coding upstream 343771 14497540 ~ 14509695 (-)
G322939 NA non-coding downstream 110240 14028261 ~ 14028476 (-)
G322919 NA non-coding downstream 124566 14013867 ~ 14014150 (-)
G322911 NA non-coding downstream 134431 14004064 ~ 14004285 (-)
G322909 NA non-coding downstream 136177 14002330 ~ 14002539 (-)
G322885 NA non-coding downstream 146914 13991523 ~ 13991802 (-)
G323207 NA non-coding upstream 49140 14202909 ~ 14203186 (-)
G323208 NA non-coding upstream 49433 14203202 ~ 14203450 (-)
G323223 NA non-coding upstream 73128 14226897 ~ 14227098 (-)
G323228 NA non-coding upstream 82047 14235816 ~ 14236167 (-)
G323229 NA non-coding upstream 83004 14236773 ~ 14237004 (-)
LOC110522122 map3k7 other downstream 956147 13173776 ~ 13197235 (-)
lyrm2 lyrm2 other downstream 1155953 12981284 ~ 12982769 (-)
LOC110522115 LOC106571283 other downstream 1591199 12545954 ~ 12547517 (-)
G320883 NA other downstream 1820318 12318003 ~ 12318398 (-)
LOC110522088 LOC106607688 other downstream 2245143 11891326 ~ 11893699 (-)
G324432 NA other upstream 1100095 15253864 ~ 15255008 (-)
rnf217 rnf217 other upstream 1865659 16019428 ~ 16125180 (-)
G325696 NA other upstream 2185563 16339332 ~ 16340707 (-)
G325960 LOC106607776 other upstream 2492986 16646755 ~ 16662881 (-)
vgll2a LOC106607788 other upstream 3409101 17559268 ~ 17566213 (-)

Expression


Co-expression Network