LOC118964438 (prs27)


Basic Information

Item Value
gene id LOC118964438
gene name prs27
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 14185096 ~ 14187192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975681.1
TGGTATTATaaatacaggacacacacaaaGCCGTAGCAGCTGATAGGATGGAGTCGGGGTGGGTATTGTGTGCTGTTGTATTTTCGTTGACCTGCATGGGAAAAGgtggcCATTCACAGGCAAATGTGTGTGGCATTGCTTCTCTCAACACAAAGATTGTCGGGGGTCAGGATGCAGCTGCAGGGAGCTGGCCATGGCAGGCCAGTCTGCACCGCTCCAACCGCCATTTTTGTGGAGGCTCCCTTATCAACAAAGAGTGGGTGCTGACTGCCGCTCACTGCTTCCCCAGGTAGAAAGACATAACCTTACCCGTCCCCCAACCCATATATTGTCATGGTGATATTGTAATATCTATATGCTGTCTTTGTCTATGTACTGAATGATCTATTTTAATCATGTATTAATCACTTAATTCAGAGAACTAATTCAAAGTATAATGTCTTtgggtattttttttttaataattaaATTTAACATGATAAATGTACATGTAACTGCAAAAATACAGGACAAGTCAAAATACAGTgccctgcgaaagtattcggcccccttgaactttgc

Function

NR:

description
serine protease 27-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975681.1 True 561 mRNA 0.43 3 14185096 14187192

Neighbor

gene id symbol gene type direction distance location
LOC110522136 prs27 coding downstream 10950 14165132 ~ 14174146 (-)
LOC110522135 prs27 coding downstream 31327 14138716 ~ 14153769 (-)
LOC110522132 LOC106607728 coding downstream 268101 13858184 ~ 13916995 (-)
dse LOC106607725 coding downstream 326922 13829056 ~ 13858174 (-)
LOC110522128 LOC106607726 coding downstream 357598 13825800 ~ 13827498 (-)
LOC110522138 LOC106607732 coding upstream 35816 14223008 ~ 14226550 (-)
LOC110522143 NA coding upstream 294133 14481325 ~ 14486331 (-)
ccn6 wisp3 coding upstream 310348 14497540 ~ 14509695 (-)
mfsd4b LOC106607740 coding upstream 486089 14673281 ~ 14679530 (-)
slc16a10 LOC106607741 coding upstream 494393 14681585 ~ 14735716 (-)
G322939 NA non-coding downstream 156620 14028261 ~ 14028476 (-)
G322919 NA non-coding downstream 170946 14013867 ~ 14014150 (-)
G322911 NA non-coding downstream 180811 14004064 ~ 14004285 (-)
G322909 NA non-coding downstream 182557 14002330 ~ 14002539 (-)
G323207 NA non-coding upstream 15717 14202909 ~ 14203186 (-)
G323208 NA non-coding upstream 16010 14203202 ~ 14203450 (-)
G323223 NA non-coding upstream 39705 14226897 ~ 14227098 (-)
G323228 NA non-coding upstream 48624 14235816 ~ 14236167 (-)
G323229 NA non-coding upstream 49581 14236773 ~ 14237004 (-)
LOC110522122 map3k7 other downstream 1002527 13173776 ~ 13197235 (-)
lyrm2 lyrm2 other downstream 1202333 12981284 ~ 12982769 (-)
LOC110522115 LOC106571283 other downstream 1637579 12545954 ~ 12547517 (-)
G320883 NA other downstream 1866698 12318003 ~ 12318398 (-)
LOC110522088 LOC106607688 other downstream 2291523 11891326 ~ 11893699 (-)
G324432 NA other upstream 1066672 15253864 ~ 15255008 (-)
rnf217 rnf217 other upstream 1832236 16019428 ~ 16125180 (-)
G325696 NA other upstream 2152140 16339332 ~ 16340707 (-)
G325960 LOC106607776 other upstream 2459563 16646755 ~ 16662881 (-)
vgll2a LOC106607788 other upstream 3375678 17559268 ~ 17566213 (-)

Expression


Co-expression Network