XLOC_022422 (b4galnt1a)


Basic Information

Item Value
gene id XLOC_022422
gene name b4galnt1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28097282 ~ 28123767 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044231
GCTTTAAATGCTTATGAACTGCTGCACACTTTGCCGCTCTCTGAGAGGCAATTATGCGTGTTGTAAATAGGAAAGCAGTGGTGGTTTTGCTGGTGCTTTTGCCACTTACAGCTATGTACTTTTACTACTGGAATTTAAACAGCATTACAACCATCAATGTGCTCCAAGGACCTGActctttaaaaatgattttagagAAAAGGTCACAAAGTTTGCAACACACAAATGACCACATCCCTTACCAAATCAAAGACGACGTCTTCAACAGAAGTCTTGCCTTAAACGGGTGTGTCTGTGAAGGCAACAAACCAGGCATCACGTTCCCATTTTCTAAACTGTTGTTCCCTGAAATATCGGCTACTAGGCTAGAAGCAATGTTTGACGATTCAGACCTGCAAAAAGCAAAGCAATACAGAAGTAAAGAGTACCAGCGTTATCGTAAAAGggCATATACAGCTGCAGATTCCCTCATCTTATCTGAAGCCAACAGCCCTCTTCAGTACCCTACGCAGGGTGTGGAAGTCAGACCTACAAGGTCCATTCTAattccagGTTTAAGTCTGAACCAAAAATCAGAAAAGGGCCCTTATTTGGTAGATCTGATTGCTACTATGGGAATATTCAGCACAGCAGCAGTGGTCGATGGAGTACAAGTGGAAGGGGAAGGAGAGATGCAGATTCATTTTATGAGCAGATCACTTGCTTCACTAAACAGACAACTCGAGTTTGTTACCTATACAAACACACGGTTCCATCCCAACACAGCAGACGTAGTCCAGTTTAAATCAGGTGCATTCCAGGCGTCCTTTACCGTCAAGATTAGACATCCACCAATGCCCAAATTCTATAATCCAGCACCAACGCAAGAATACAATGTAAACACTTTGGTCACCATTGCCACCAAAACATTTCTACGCTATGATAAACTTCAGGATTTGATCAACAGCATTCGACAGTTTTACCCCACTACAACTATAGTAATAGCTGATGACACAAAGGAGCCTAAGCCTGTAACTGGACCCCACATCGAACATTATATCATGCCCTTTGGAAAGGGCTGGTTTGCTGGTCGTAACTTGGCAATCTCCCAAGTAACTACCAAATACGTGCTTTGGGTGGATGATGACTTTATTTTCACCTCAAACACCAAACTGGAAAAAATGGTGGATCTTTTGGAGAAAACCACTTTGGACCTGGTGGGAGGGGCAGTCAGAGAAGTGACAGGATACACTGCCACCTATCGACACATGCTCTCCACAGACGCTGGTGATGAAGAGGGAGACTGCCTACACATTAGGACAGGATTCCACCATGTCATTGAAGGATTTCCCAATTGTGTGGTTACAGATGCAGTCATTAATTTCTTTATGGCTCGCACAGAAAAGATACAACAAGTGGGCTTCGACCCGAGGCTGGCTCGGGTTGGTCATTTAGgATTTTTTATTGACGGACTGGGCTCCCTCCACGTGGGCTCCTGTAatgatgttattattaatcatgCATCAAAGATCAAGGCAATGCTGCCATGGGGACAGTCTGATATTGACAAAGCCTATTCTAAGTTCCGCTATCATTCCACTAAAGAGACATCTATGAACGAATATGATCTTTATTACCTCAAAAATCATTTTCAATGTGTCACTAGTGACTAAATATGGACTGTTAAAACTTAGGAAAGCACTTTCAGGGTCACTCCCAACAAATAGCCGACGAACATTTATAAACCATAACAGGAAAATGAGCAaatgaccacacacacatgcattttttttGGTTGTCCACAGATGGCACAGCACATTTAACATCTActgcatatttaaaacaattttaatgttgtttttgtatttaatttgaatatcAGCATTTGTGAGATCTGCTCAGgttatttgtgtaaatgtgactttttttttttttttttgtctttttgttaatGAGGAATGCACATGTATGGTATCATGTCAAGGTTTGTAGAGGTAACACAGATTTTATTTTGACCCTTGGAAAATGAAGAAATGGCACAGCATGGCATATTGTTTCTAGTGTTATTAAAcgttttatttaatact
>TCONS_00044232
ATCTTTCACTCTCTTCACACGCGCCTGTGCTCTTGAGGCAATTAAATGGATTTTGGATTTACTCGGTTTTTAGGGCAATTATGCGTGTTGTAAATAGGAAAGCAGTGGTGGTTTTGCTGGTGCTTTTGCCACTTACAGCTATGTACTTTTACTACTGGAATTTAAACAGCATTACAACCATCAATGTGCTCCAAGGACCTGActctttaaaaatgattttagagAAAAGGTCACAAAGTTTGCAACACACAAATGACCACATCCCTTACCAAATCAAAGACGACGTCTTCAAAAGTCTTGCCTTAAACGGGTGTGTCTGTGAAGGCAACAAACCAGGCATCACGTTCCCATTTTCTAAACTGTTGTTCCCTGAAATATCGGCTACTAGGCTAGAAGCAATGTTTGACGATTCAGACCTGCAAAAAGCAAAGCAATACAGAAGTAAAGAGTACCAGCGTTATCGTAAAAGggCATATACAGCTGCAGATTCCCTCATCTTATCTGAAGCCAACAGCCCTCTTCAGTACCCTACGCAGGGTGTGGAAGTCAGACCTACAAGGTCCATTCTAattccagGTTTAAGTCTGAACCAAAAATCAGAAAAGGGCCCTTATTTGGTAGATCTGATTGCTACTATGGGAATATTCAGCACAGCAGCAGTGGTCGATGGAGTACAAGTGGAAGGGGAAGGAGAGATGCAGATTCATTTTATGAGCAGATCACTTGCTTCACTAAACAGACAACTCGAGTTTGTTACCTATACAAACACACGGTTCCATCCCAACACA

Function

symbol description
b4galnt1a Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

GO:

id name namespace
GO:0001574 ganglioside biosynthetic process biological_process
GO:0030259 lipid glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0030173 integral component of Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008376 acetylgalactosaminyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1462 Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in ganglioside biosynthetic process. Predicted to act upstream of or within lipid glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of Golgi membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 26. Orthologous to human B4GALNT1 (beta-1,4-N-acetyl-galactosaminyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000061520

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044231 False 2066 mRNA 0.41 11 28097282 28120058
TCONS_00044232 True 788 mRNA 0.42 6 28111376 28123767

Neighbor

gene id symbol gene type direction distance location
XLOC_022421 sp5l coding downstream 71339 28023091 ~ 28025943 (-)
XLOC_022420 ankrd33aa coding downstream 222142 27862807 ~ 27875140 (-)
XLOC_022419 acvrl1 coding downstream 240178 27835647 ~ 27857104 (-)
XLOC_022418 acvr1ba coding downstream 274362 27800519 ~ 27822920 (-)
XLOC_022417 NA coding downstream 301359 27788369 ~ 27795923 (-)
XLOC_022423 tac3a coding upstream 15722 28139489 ~ 28141419 (-)
XLOC_022424 znf385a coding upstream 62116 28185883 ~ 28294763 (-)
XLOC_022425 neurod4 coding upstream 220221 28343988 ~ 28347039 (-)
XLOC_022426 c1ql4a coding upstream 275546 28399313 ~ 28423222 (-)
XLOC_022427 NA coding upstream 309408 28433175 ~ 28453703 (-)
XLOC_022416 NA non-coding downstream 324910 27770481 ~ 27772372 (-)
XLOC_022415 NA non-coding downstream 367828 27727295 ~ 27729454 (-)
XLOC_022412 NA non-coding downstream 421888 27652896 ~ 27675394 (-)
XLOC_022408 CR354381.1 non-coding downstream 516990 27580164 ~ 27580292 (-)
XLOC_022432 CR677617.1 non-coding upstream 1062085 29185852 ~ 29257716 (-)
XLOC_022433 NA non-coding upstream 1210086 29333853 ~ 29358214 (-)
XLOC_022440 NA non-coding upstream 1551228 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 1697434 29821201 ~ 29822565 (-)

Expression


Co-expression Network