leg1 (leg1)


Basic Information

Item Value
gene id leg1
gene name leg1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15248791 ~ 15251356 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124381.1
GTAGTCAGCATGCAGTGTGTCTGGACCCTCTCCCTGCTTCAGCTAGTAGCCCTGTGGGCCAACGCAGCAGTGCTCACTGAAAATGGCCTCCCCATCCTCTGGGACCAGGCACCCAGCCAGCTGTCGGACCTGCCTCAGGCGGACAACGTGGTCACGATCAACCCCTGGAACTCCCTGCAGAGGATGAGTCTGTATAGGATACTGGTTGGCTCCACTGACAAGTATATGGCCTCCATGGGAACCAATGACAGTGCCAGCCCGTTGTGGGGCCTGCCTCTGCAGCTGGCCTGGAAAGTCAGATCAGGGCGTTTGGTTGACCCCACTGGTGCTACAACATGTGGACAGGAAGGAGATCCCATGTGCATTTCCACTAATAGCTGGTGGGCATgtGTGAACTACTACCTCTCAGTGATCCCGTTCCTGGCTGCTGTGcagaaaggcctgattggagATGGTCTCATTCAGGTCCAGGTACAGGCACCAGCTGAGGCAGCTGAAGACTCCTGCACCTCTTACACAGACTGCTCTGCTAAGTACCCAGACCTCATGGCCAAATGGGAAGAATTCTTCCAGACCCTGAAAGATGTTAGCGCATCTGAGATTTCTGACTTTGAGAAAAGGGACCAGATTCTAGGTGCCTTTTGGGCAGGTGAAACGCTCTCTTTGAATACTGCCTCATCCAGCTGCAAGGCAAAGATGAGCTACTATTCCAGCCCAGAGGTTGCATTCGCCAAAAGCTGGATGAACGCTGCAGATTACGTGGCAGCCGCATACTTCCAGTCCAGCCTCAATAACTCTGTGCTTTTCATGGGACCTCTGCCCAGCAGAGTGCTTCAGGAGGGGGATAGTGCTCCTAACATAGCTGACCTAAGCACAGAGGAGAACCACACCCTCTATATCTTTGGTTGGATGAACAGGATGAACACGATTCTCTTGGGCTCTCCGGTTAAGATGTGGCGCTCAGCCATGTGCTCTGACAAGGCTCGGGAGAAGGGCCGAGAGCTCCTACAGAACCTGATCCTGGACCCTAAATTCGCTGTTTCCACCTTCGTCTCCATTCTGACAGAGATGACCCGCAGCTGCACGGGCCTCAGCACATAAGTCCAATGAATAAAACTCACACAGTGCTATTTACACTTCCTGTGTTTGCCATCATTCCTTTTCCACAGTAGACAAAGTCCTTGTTGATTAATGCACAAACAATGTATTTATTGTATGActataataatacatttacatgGAAGAGTGGCTCAGTGCAAAGTGCATAATAACAAAGATAAATAAATGTTGCTTGAAATTTGAACATTA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124381.1 True 1308 mRNA 0.50 6 15248791 15251356

Neighbor

gene id symbol gene type direction distance location
LOC118964439 LOC106607753 coding upstream 2128 15245760 ~ 15246663 (+)
LOC110522163 LOC106607750 coding upstream 248221 14992265 ~ 15000570 (+)
LOC110522159 LOC100194603 coding upstream 284337 14960197 ~ 14964454 (+)
LOC110522153 LOC106607744 coding upstream 328164 14848537 ~ 14920627 (+)
cdk19 cdk19 coding upstream 416769 14769184 ~ 14832022 (+)
lama2 lama2 coding downstream 198441 15449797 ~ 15590211 (+)
LOC110522173 LOC106607757 coding downstream 339439 15590795 ~ 15613421 (+)
LOC110522174 LOC106607759 coding downstream 394399 15645755 ~ 15680105 (+)
LOC110522175 LOC106607760 coding downstream 447448 15698804 ~ 15710542 (+)
LOC110522178 NA coding downstream 487738 15739094 ~ 15741483 (+)
G323827 stx7 non-coding upstream 89423 15150857 ~ 15159368 (+)
G323799 NA non-coding upstream 143083 15105315 ~ 15105708 (+)
G323781 NA non-coding upstream 165598 15082818 ~ 15083193 (+)
G323780 NA non-coding upstream 166076 15082083 ~ 15082715 (+)
G323711 ctgf non-coding upstream 170724 15076337 ~ 15078067 (+)
G323833 NA non-coding downstream 63 15251419 ~ 15253573 (+)
G323870 NA non-coding downstream 5311 15256667 ~ 15257189 (+)
G323871 NA non-coding downstream 6316 15257672 ~ 15258875 (+)
G323872 LOC108432850 non-coding downstream 11463 15262819 ~ 15263463 (+)
G324541 NA non-coding downstream 165205 15416561 ~ 15416770 (+)
G322645 NA other upstream 1363288 13850287 ~ 13885503 (+)
G321447 NA other upstream 2105348 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 2267240 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 2436426 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 2699677 12548411 ~ 12549119 (+)
G325389 fabp7 other downstream 1183897 16435253 ~ 16436882 (+)
G327705 NA other downstream 3012934 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 3175798 18427154 ~ 18428907 (+)
G328474 NA other downstream 3505499 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 3543225 18794581 ~ 18806804 (+)

Expression


Co-expression Network