LOC110522173 (LOC106607757)


Basic Information

Item Value
gene id LOC110522173
gene name LOC106607757
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15590795 ~ 15613421 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600334.2
gagtgactttgttgagcttcacatTCAATTTTAGATAATAttggatgatttggacatgagcGAAAAATTCTAATATCTgtaccatgacttgaatgggatttgtgccacaaatgctaaaacgttagcaATTGGAAACCAAAACCAAATCATACCTTGTACACAGACTGCTTTCAAGGTAAAGAAACCAATGGGTCATTTTGTCATTTGGTTGAACTTGTCCCTTCAATTCAGCTCTACGAATGTCTTCTGTGCGATTACAATTTGACCTTTTCCAGACTTTCGTTCTTATGAGGAACATTGGGAATTTACGATTTTTAGAAGGCTGTTACACAATCATGAAATATTTAGCTTCAGGGTCAGCACCACAGTGAAGATGAGATACGGGAAAACACATGCTTTCTTCACCCTCCCAGTCCATTAGGACTTTCAGGTTTAAGGAAGTGAGATTACTGAGAGGCAGTGTACCATTAATGCCATGTAGAAGTAGAACTGGTTCATCCATAGTGTGGCCTTTGCTGCATCAATCGTCATGAGGAGGCCTCTGTTCAGACTGACCCAGAAAAGAGTGCTGCCCctgtggcagagagagagcagaaccaCCCTGGCCCCTGGTGCTCTACGGCAACTCCACTCCTGCTCAGCACTGGTTTACCGAAAGCACGGACATCACTATGACACAGTCAGAATGGAGGAGATGTCCTTGCCAGCCCTGGGTCAACACAGTGTCAGACTGAGGATGTTGGCAGCACCAGTGAATCCAGCTGATATTAACATGCTACAAGGCACATACCCAATCCTTCCAGTGTTTCCTGCTGTGGGTGGGAATGAGGGAGtgggggaggtggtggaggttgGTCGGAAGGTCACCTCTTTGAGACCAGGAGACTGGGCCATACCGTGGGATGCTGGCTTTGGTACATGGAGGACAGAGGCAGTGTGTGAGGCTGATGACCTTCTCCAGGTCTCCAAGGACATCCCTCTGCTGGGGGCTGCTACCATCGGGGTGAACCCCTGCACTGCCTACAGGATGCTGCAGGACTTTGTTACACTCAAACCAGGGGCCACTGTGATGCAGAAtggatccaacagtgcagtgggTCAGGCTGTCATTCAAATAGCTGCTGTCTTGGGGGTGAAGACCATCAACATCATCAGAGACAGACCCAATCGACAAGAGTTGGAGGAGGAACTAAAATCGATGGGAGCTGATTTTGTTATCACTGAAGAAGAGCTGCAATGTCTAGGTTTGGATAACGTAATTCAGGAGCTCCCAAAGCCCATCCTGGGTTTGAACTGTGTGGGAGGCCGGAGTGGTGGACTTGTCCTCTCTAGTCTTTGTGATGGGGCAACTTTAGTGACATATGGTGGGATGGCCAAAAAGCCTCTCCAGATTCCAGCTAAATCTCTCATTTTTAAGAATATAACATTACAAGGATTCTGGATGACGCAGTGGAAAAGAAACAATAGTAAAGcAGATGTGACGCAGCTACAGACCATGGTGACCTCTGTGTGTGATCTCGTGAAGTCTGGCCAGCTCCAGCCACCTCATTGTGTCCAAGTTCCCTTCCACCACTACAGCCAAGCCCTCCAGGCCACAATACAGGCGCATCAAAGGAAACATGTACTACTCATGTAGCAAAACAAAAACACAGTATCCTCCATCGGGGAAACGTTTTATTTTGCTTTCTTTTGTCATTTATCTTATTGTGTCCGTTGCATTATACcaaatgagcacacacacaccaaaaaggaGTTATTCCGCAATTATTTACAAAATGTTTAGTGGTCATTTTAGAAGCTGTAGAACATATAGTATACAACAACAAAAGGGACATCTTTCAACAGTCATATTTACAGTATAAAGCACGACATAAGGGCAGGGAGAGGGTATACACAGCACATCGTTTAGCACAGCTCATACAGCACAGTCATATCTGTAGTTATACCATTTTTGCTTTCTAAATTGAAATGTTCAGACATGCACATTAAATTATTTTAAACCGTTTCCTCCATTGAAAGCATCTTTTGAGAACCACACTTTAAATGTTATTAGGAAGCAACCTGAAATGCTAGTTTAGGACCACAGCTTGAGAACTGATGTTAACAAACATTTTAAATAATGTACTTAACGCTATCCCTTTGATTCTCATTGGCTCGTTCACTGGTCATATTCTGTCTACATGGTCAACATGAAACGGACAGAAGTCACAGTGGAGAGCGATTGCTCAGAGGGACCCCACAGATAAGTGGCGAAGAGCAAACTGGGGCTAGAATACCCTCTATGAGAACTAAGGAGTGTTATATCCACCAACCACTTCAGCTCACCCTACATTATGATTTGGCAGTGAATTTAAAAGTAGTAACAAGGAAGAATTGTTTAGAAATATCACAAAATTAAGTAACTTGCCTATTTATCTGCAATATTGAGCACTGACATTGCTGATTACAGACGTCGCTGTACAGTATTTGGGTGAAATGGAATGAGTCAGTGAATAACCTTTACAAAGAACTACAGTAAAAACACAAATTGAGTTAGGGGAGGCATGCACTCACCATCTTACAAGAGAGAATGAGCTACAGAGTAAAAAATCATATTAGTGTTTGCATGTCTATTATTTAATGTAAATACAATGTCTGACAAACCTGTCATTTTTATACCCATTATAATACTACTGTTCTTGGTTTTTGACCATTTACTGTATTGATCATTACAATCAACTAATCTAGGACCTTGACGGTATAGTAAATTGCCCTTATCGTCACCAACACACAGACCTATCACAGATTATTGTTCAGTGGCTCTCCTCAGTCATAACTGTCCAACTCCTCATGCGTTGACAGTTGGACTTCCAGTAGCATTCTAAACTACAACCCCACAAACGACAACAACATTAACAC
>XM_036975732.1
gagtgactttgttgagcttcacatTCAATTTTAGATAATAttggatgatttggacatgagcGAAAAATTCTAATATCTgtaccatgacttgaatgggatttgtgccacaaatgctaaaacgttagcaATTGGAAACCAAAACCAAATCATACCTTGTACACAGACTGCTTTCAAGGTAAAGAAACCAATGGGTCATTTTGTCATTTGGTTGAACTTGTCCCTTCAATTCAGCTCTACGAATGTCTTCTGTGCGATTACAATTTGACCTTTTCCAGACTTTCGTTCTTATGAGGAACATTGGGAATTTACGATTTTTAGAAGGCTGTTACACAATCATGAAATATTTAGCTTCAGGGTCAGCACCACAGTGAAGATGAGATACGGGAAAACACATGCTTTCTTCACCCTCCCAGTCCATTAGGACTTTCAGGTTTAAGGAAGTGAGATTACTGAGAGGCAGTGTACCATTAATGCCATGTAGAAGTAGAACTGGTTCATCCATAGTGTGGCCTTTGCTGCATCAATCGTCATGAGGAGGCCTCTGTTCAGACTGACCCAGAAAAGAGTGCTGCCCctgtggcagagagagagcagaaccaCCCTGGCCCCTGGTGCTCTACGGCAACTCCACTCCTGCTCAGCACTGGTTTACCGAAAGCACGGACATCACTATGACACAGTCAGAATGGAGGAGATGTCCTTGCCAGCCCTGGGTCAACACAGTGTCAGACTGAGGATGTTGGCAGCACCAGTGAATCCAGCTGATATTAACATGCTACAAGGCACATACCCAATCCTTCCAGTGTTTCCTGCTGTGGGTGGGAATGAGGGAGtgggggaggtggtggaggttgGTCGGAAGGTCACCTCTTTGAGACCAGGAGACTGGGCCATACCGTGGGATGCTGGCTTTGGTACATGGAGGACAGAGGCAGTGTGTGAGGCTGATGACCTTCTCCAGGTCTCCAAGGACATCCCTCTGCTGGGGGCTGCTACCATCGGGGTGAACCCCTGCACTGCCTACAGGATGCTGCAGGACTTTGTTACACTCAAACCAGGGGCCACTGTGATGCAGAAtggatccaacagtgcagtgggTCAGGCTGTCATTCAAATAGCTGCTGTCTTGGGGGTGAAGACCATCAACATCATCAGAGACAGACCCAATCGACAAGAGTTGGAGGAGGAACTAAAATCGATGGGAGCTGATTTTGTTATCACTGAAGAAGAGCTGCAATGTCTAGGTTTGGATAACGTAATTCAGGAGCTCCCAAAGCCCATCCTGGGTTTGAACTGTGTGGGAGGCCGGAGTGGTGGACTTGTCCTCTCTAGTCTTTGTGATGGGGCAACTTTAGTGACATATGGTGGGATGGCCAAAAAGCCTCTCCAGATTCCAGCTAAATCTCTCATTTTTAAGAATATAACATTACAAGGATTCTGGATGACGCAGTGGAAAAGAAACAATAGTAAAGATGTGACGCAGCTACAGACCATGGTGACCTCTGTGTGTGATCTCGTGAAGTCTGGCCAGCTCCAGCCACCTCATTGTGTCCAAGTTCCCTTCCACCACTACAGCCAAGCCCTCCAGGCCACAATACAGGCGCATCAAAGGAAACATGTACTACTCATGTAGCAAAACAAAAACACAGTATCCTCCATCGGGGAAACGTTTTATTTTGCTTTCTTTTGTCATTTATCTTATTGTGTCCGTTGCATTATACcaaatgagcacacacacaccaaaaaggaGTTATTCCGCAATTATTTACAAAATGTTTAGTGGTCATTTTAGAAGCTGTAGAACATATAGTATACAACAACAAAAGGGACATCTTTCAACAGTCATATTTACAGTATAAAGCACGACATAAGGGCAGGGAGAGGGTATACACAGCACATCGTTTAGCACAGCTCATACAGCACAGTCATATCTGTAGTTATACCATTTTTGCTTTCTAAATTGAAATGTTCAGACATGCACATTAAATTATTTTAAACCGTTTCCTCCATTGAAAGCATCTTTTGAGAACCACACTTTAAATGTTATTAGGAAGCAACCTGAAATGCTAGTTTAGGACCACAGCTTGAGAACTGATGTTAACAAACATTTTAAATAATGTACTTAACGCTATCCCTTTGATTCTCATTGGCTCGTTCACTGGTCATATTCTGTCTACATGGTCAACATGAAACGGACAGAAGTCACAGTGGAGAGCGATTGCTCAGAGGGACCCCACAGATAAGTGGCGAAGAGCAAACTGGGGCTAGAATACCCTCTATGAGAACTAAGGAGTGTTATATCCACCAACCACTTCAGCTCACCCTACATTATGATTTGGCAGTGAATTTAAAAGTAGTAACAAGGAAGAATTGTTTAGAAATATCACAAAATTAAGTAACTTGCCTATTTATCTGCAATATTGAGCACTGACATTGCTGATTACAGACGTCGCTGTACAGTATTTGGGTGAAATGGAATGAGTCAGTGAATAACCTTTACAAAGAACTACAGTAAAAACACAAATTGAGTTAGGGGAGGCATGCACTCACCATCTTACAAGAGAGAATGAGCTACAGAGTAAAAAATCATATTAGTGTTTGCATGTCTATTATTTAATGTAAATACAATGTCTGACAAACCTGTCATTTTTATACCCATTATAATACTACTGTTCTTGGTTTTTGACCATTTACTGTATTGATCATTACAATCAACTAATCTAGGACCTTGACGGTATAGTAAATTGCCCTTATCGTCACCAACACACAGACCTATCACAGATTATTGTTCAGTGGCTCTCCTCAGTCATAACTGTCCAACTCCTCATGCGTTGACAGTTGGACTTCCAGTAGCATTCTAAACTACAACCCCACAAACGACAACAACATTAACAC
>TU367608
ACTGGTTCATCCATAGTGTGGCCTTTGCTGCATCAATCGTCATGAGGAGGCCTCTGTTCAGACTGACCCAGAAAAGAGTGCTGCCCctgtggcagagagagagcagaaccaCCCTGGCCCCTGGTGCTCTACGGCAACTCCACTCCTGCTCAGCACTGGTTTACCGAAAGCACGGACATCACTATGACACAGTCAGGTAAGGGATCATATGATGTTGCCATACTTGTGTGTCGATTGGAAGACATCTGCGAGGGAATTTGAGATGCTCACTGTGAAATGAAAATAGTTTTGCTCAAAACAGATCATTAAAAGGCACTTGTTTCAAAActctaagcacattttcaattgactaagtACAGTACAAGACACAAAATCATAGTCACTTTTTCACCAAACCTAATCAGTATTTCATCTAGAAATACATGTTTCACATTGCAATGCT

Function

NR:

description
trans-2-enoyl-CoA reductase, mitochondrial-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600334.2 False 2898 mRNA 0.43 10 15590795 15613421
XM_036975732.1 False 2895 mRNA 0.43 10 15590795 15613421
TU367608 True 442 lncRNA 0.44 1 15591283 15591724

Neighbor

gene id symbol gene type direction distance location
lama2 lama2 coding upstream 584 15449797 ~ 15590211 (+)
leg1 leg1 coding upstream 339439 15248791 ~ 15251356 (+)
LOC118964439 LOC106607753 coding upstream 344132 15245760 ~ 15246663 (+)
LOC110522163 LOC106607750 coding upstream 590225 14992265 ~ 15000570 (+)
LOC110522159 LOC100194603 coding upstream 626341 14960197 ~ 14964454 (+)
LOC110522174 LOC106607759 coding downstream 32334 15645755 ~ 15680105 (+)
LOC110522175 LOC106607760 coding downstream 85383 15698804 ~ 15710542 (+)
LOC110522178 NA coding downstream 125673 15739094 ~ 15741483 (+)
LOC110522177 LOC106607761 coding downstream 219718 15833139 ~ 15881137 (+)
il20ra il20ra coding downstream 331072 15944493 ~ 15949042 (+)
G324597 NA non-coding upstream 122487 15465300 ~ 15468308 (+)
G324557 NA non-coding upstream 160554 15429886 ~ 15430241 (+)
G324544 NA non-coding upstream 172120 15418363 ~ 15418675 (+)
G324541 NA non-coding upstream 174025 15416561 ~ 15416770 (+)
G323872 LOC108432850 non-coding upstream 327332 15262819 ~ 15263463 (+)
G324584 arhgap18 non-coding downstream 2628 15616049 ~ 15618768 (+)
G324697 NA non-coding downstream 69048 15682469 ~ 15682674 (+)
G324699 NA non-coding downstream 70890 15684311 ~ 15684628 (+)
G324701 NA non-coding downstream 71813 15685234 ~ 15685472 (+)
G324706 NA non-coding downstream 77248 15690669 ~ 15711629 (+)
G322645 NA other upstream 1705292 13850287 ~ 13885503 (+)
G321447 NA other upstream 2447352 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 2609244 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 2778430 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 3041681 12548411 ~ 12549119 (+)
G325389 fabp7 other downstream 821832 16435253 ~ 16436882 (+)
G327705 NA other downstream 2650869 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 2813733 18427154 ~ 18428907 (+)
G328474 NA other downstream 3143434 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 3181160 18794581 ~ 18806804 (+)
G324660 NA non-coding downstream 2346 15594070 ~ 15602028 (+)
G324664 NA non-coding downstream 10982 15602706 ~ 15603020 (+)

Expression


Co-expression Network