LOC110522175 (LOC106607760)


Basic Information

Item Value
gene id LOC110522175
gene name LOC106607760
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 15698804 ~ 15710542 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600336.2
atttcagtcataagagacggtagcagcaccattatgtacaaaataagttacaaacaatgcaaaaaaaacaaaatagcacaatttgTTACGGGCATGTAAAACGTCAGACATTCTCTTCGGCGCCATCTTAACAATGCTGTCAATCTCCCCATTTGACAAACCCTGAGAATTCCAAACAAGGACCAGAGGGGTTGGGAGACAGAATAGGCGTAGCCCCTCTTTAAACTCCTTTCTCAGCCCCTCAACCCCAAAGGCTGAAGTGGAACCTAACAATACTAGAAGTTTGGTTAGTCCCATTTCAAATGAGAACATTTAGGCAGTATCACAGTGGAGAAATGATTATAAAAACCCAGCCACGTACACTTTAAGCCCTAGCTCTCTCGAAGCCCCGAgtgaatatgttttttttttttggtatccAGTTGAGCCAGACTTGCATTGCATAAACACAGGAAATGACAGACTCAAACATCTGCAACATTTCGATATAGATCTCTGGGCTTTTAACCCTTTAATTGCTCCTGCTACAATAAGCTACAGTTGGTTGTTTACTCCGAGTGTGCTTGCTCATCACAGCATGTAGGCAGTAGGAACAGGGAATGAGTTTAATCTTGATTCAGTGGCTATATAGGCTATTATGTCTGTGTTATGGAGACATTATAAATGATTGCATTCTTAAATGGTCATCATCAAAGGATTTGGTTAACTCAATCATTTGCATCTCTAGATTGAAAGCAACATGCAGGGAGCTTAGATTACTATGTGTTATCGATATTTGCATCAATTATTGTCTTTGCATTGGGGACACTGTAAACTATTATGGTAATATTGTATTCAGATGCTTGACTTCTCCACGCATAAATTATTCAAATAagctttttcttgtttttttctacTCACTGTGGGAGTACAATGCTTTTCCTGGTCTacatcccaaataaatgcattaTTCCGAACTGAAGCCAGCTGGTGGAGAGAGCCTTTTTACAAGCTACCATTCCATGGAGGAATAGAAAGTGGACATGATAAGGCGTCTTGGTATAACTCCAAAAGAATTCACAGAGCTTTGTCCCCAGATGTGAATACTTTAAAGTTAGTAGGCTAAACAGAACACGTATTTGATTGGTTATAGTCGACTGTGTGTGGATCACCGGATCTTTAGTGACAAAAAGTTGAGACGGTTGACAGTAAAACAATAGTAGACATTCTCTGCGCCTTGCGCAGCTTGGAACAGTTAGTACAGACGTGTAGCCAACAGTCCAGGTGCGCGTTTTGGAAATGGAGCGAAACAATGAAATCTTTTCTCTTTGGAAGTTTATTCTTTTTCGTATCGGCACTCGATTATAAATGTAATGGGAATACAAACGGACTTAGCAAGCCAACCACGAGTGTCGAGAAACATGGCTTGCGTTATCATTTTCCATGCGTAATGGGCAAATAACACCAGCTAGAAAGAAGCACCATATTTTACAGGGCCGTGGACAGCGGTAGTGATGATTTCAGCTGGTGGAGTGATTACGGGCCACCTTGCTGCACTGAAGAGGCAGGACTCGGCCCGCTCCCAACACCATCTGCCCATCCAGTCCCCAGCCCCAGGAGAGGCCCAGGAGAAGAGGAGGGCCAAGCGTAAACCCAGAGCCGACGTAGTGGTGGTCAGGGGAAAGATCCGCCTCTACTCTGCCTCTGGGTTCTTCCTCATCCTGGGTGTATTGATCCTGCTGATGGGCATCGCCATGGCCGTGCTGGGCTACTGGCCACACAGAGAGGATCTCGTAGCGGCCAACGCCAAGCTATCCACCAACGACACCAGGGTGACCCGGGAGGAAAGTGGTACACTGGCCCAGTTCTTTGAGCAGCACCTGCACTCTGAGAAGATGAAGATGCTGGGCCCCTTCACCATGGGTATCGGTATCTTCATCTTCATCTGTGCCAATGCCATCCTGCACGAAAACAGGGACCGGGAGACCAAGGTGATCCACATGAGAGACATGTACTCCACCGTCATCGACATCCACAGCCTGAGGATCAAAGAGCACAAGTACATGAATGGGGCCTACTCCGGCTCTTATGGGGAGCATGAGGTCAGGACCTATGAGAACCAGTGTGCCTCCAAGCTTGCTGCTAACACCCTGCTAGGGTTCCCCAGCATGGGGAACAATGTGAGGGTGTCTCGCAGGGCCAGCTCTACGGAGGACGAGGAGGGCCTTCTCAATGAGGCCAAAGGGGGGCATGGTCTCCTGCCTTCACTCTACAGAGAGCGCTCTGGCTCCATCTTTGGTCTGCAGCATGAGGGCAGCCGCCACAGGGACGAGAGGAGCAGCTTCCCCAAGAGATGCCAGACCAGGTCAATCGTCTCGTCCTCGATCAGCGCTTTCACCCTGCCCGTTATCAAGCTCAACAACTGTGTGATCGACGAGCCTGACATGGACAACATCACAGAGGACCTGGAGCACATTCGGGTTAGGTCCCGACCCCCCTCTGTGGAGTCCCTGGCTGTGCCTGTTCCGGCAGACATTGCCAAAGCCTACAAACCTCCCGACGTCATGCTCCTCAGGAGTAACTCAGCCACAGAGTCCCACTCCTTCTCGTCCTCTCATAGCTCTCTGTCCCCAGGCTCTGCCAGTGGGAGGTACCTGTCCCCCGGGACTGCCCGCAAGGACTTCGGCTCTAACAACTCCCTCCACATGCTTTCTTCTCACTCTAAGTCTCTGGACCTGGATCGAAGGCCCACCACCCTAACAGTGAAGCCAGAGCAGAGGAAACATCCCAGCTGGCCCCGGCTGGACCGCAGCAATAGTAAAGGCTACATGAAGCTGGAGAACAAGGAGGATCCTATGGACAGACTGCAGTTGCCCCAGGTAGCAGTCAAGCAGGATTACACCAAGAAAGAGAAACTGCTCATGATCTCCAGGTCTCACAATAACCTCAGCTTTGAACACGATAAGCAGTTCATGAACAACACTATGAAACGAGGGagctctgagaccaggttttAAATGGAACTCTTACAAAACCTGGTCTCAGACGTGTTTGTgccgtcttgccaactcctacggTCATTGCCACCTGATGAGGACCATATGAGTTGGCAAGAAAGCACAAACACATCTGGGTCCAGGCTATATGAAGCCCACTACTTGGACCTAAATCTaacaatgtgtttgtttgtgtgacaAGATCATTCTGCAATACAATTCTAGCTGTTCACTCTCAGTGTTGCTTAGTAAATTGTAAGTGTGATCACATGTTGTTTTGGGATGGAGCTCTCAGGTAGTCCGTCTGTTTGCAGTCTAAAGAAAGAGTGGCTGTGTTACGTGTGTGAGATATTTGCAGCACAAATCAATTCATAAACTTTTTTCAAATTAGGTTTAAAGTGAACTTAGAAGTACAGAAACCTACACCATTAACTTGTGGTTTGTTTTTCTTGTCACATTTCCAGTCTTTGTGTTGTTGCAACACGCTGTACTTTTTGTTCAAACCGGTCAGTGTACGTACAAGAGTTGTTTAGATATTTTGCTATGGAGCTTTTAATAATGTAATTGTTCTCAACACACACTGCTATTTTTTTAAGGAAAAAGGTGTAAAATTTACAATTTACTCAGAATAAAATTAAGCTTTTCAATGAGTAACATTTGTCTTTGATGATAGCCTATACTATTTTGTTCTCCCCAGCCTTGGAAATGTGCTATGTGTTCACAGAAAAGTATTTAACCTTGCCTTAGTAGATGTATTTTAAACACAAAGATAGAGTCAATACTATAAACAGTACAGAGTATTTCTGCTCGCATCTGTTTGTCTGATATTCATTTAGTCTCTTGAATTCTGAAAGTGAATGAACTGAGAAATTCTCCTAACATTGCTTTCTCGCCCCACAAACTTTGAATCGGTTGTGAAGGGAAAATATTTTATCTTTGGAAGCAAGGAAGTAAATAGCATTCCCATGTTGAACAATAGGAGATCTGGAAGTACCGAATTGGGAGCTGCCAGAGTAGAGAGGAGTCTCATAAGATGGTTCCATCTGGAGGGGGAGTGAACCAAGATGTGTGTGACTTCCAGGAAGCCTCATATTGAAACAAGGTTTGCACATTGTCAATACGAACAGGAGAAACTGTGCCGTGTGCATGTTCAGGATTTGATATATTTTCCATGTTTTCTTTTGCTGAAATGTCTATCTGACTGCAATTAGAAAGACATTTGATTGAATATTTTTGTGTCCCCTATTTGTTATCTGTAAGAGGTGGTATTTTGTGAAAACAGCAATCAATGAAACATTGGATGTCTGGGTGCAAGTCTATTTTGGACAGGTGGAGTGGCGTGAATTCCAATCCGCCTCTCATAGTCTTCAACAATACACCCTCTGCCTTGCCGATTTGGTCTGTTATTGCTATGCTCTTTTAAGCATGGGTAGACTATTCACAATATATCATCTTCCCATAAGCCACTTCTAAAATAATAAGGTAATATCATCCCATTGAGCACATactggttaaatcaacgttgtttccatgtaatttcaatgaaattatgtcgaaccaacgtggaatagacattgaattgtctgtgcccagtgggatatggatgaagCATTGGCTAATCCTCTGATGTTCTTAAGTAGTGAATGTTACTTCATGCAAAGTAATAAAGAGTATCTCTTGCtttgattttgtacatttgtatAGAATATCgtggcatatacagtgccttgcgaaagtattcggcccccttgaactttgcgtcattttgccaca

Function

NR:

description
PREDICTED: transmembrane protein 200A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600336.2 True 4748 mRNA 0.45 2 15698804 15710542

Neighbor

gene id symbol gene type direction distance location
LOC110522174 LOC106607759 coding upstream 18699 15645755 ~ 15680105 (+)
LOC110522173 LOC106607757 coding upstream 85383 15590795 ~ 15613421 (+)
lama2 lama2 coding upstream 108593 15449797 ~ 15590211 (+)
leg1 leg1 coding upstream 447448 15248791 ~ 15251356 (+)
LOC118964439 LOC106607753 coding upstream 452141 15245760 ~ 15246663 (+)
LOC110522178 NA coding downstream 28552 15739094 ~ 15741483 (+)
LOC110522177 LOC106607761 coding downstream 122597 15833139 ~ 15881137 (+)
il20ra il20ra coding downstream 233951 15944493 ~ 15949042 (+)
hddc2 hddc2 coding downstream 357955 16068497 ~ 16073105 (+)
trdn NA coding downstream 611074 16321616 ~ 16370330 (+)
G324701 NA non-coding upstream 13332 15685234 ~ 15685472 (+)
G324699 NA non-coding upstream 14176 15684311 ~ 15684628 (+)
G324697 NA non-coding upstream 16130 15682469 ~ 15682674 (+)
G324584 arhgap18 non-coding upstream 80036 15616049 ~ 15618768 (+)
G324664 NA non-coding upstream 95784 15602706 ~ 15603020 (+)
G324581 NA non-coding downstream 1592 15712134 ~ 15713547 (+)
G324719 NA non-coding downstream 7863 15718405 ~ 15718657 (+)
G324720 NA non-coding downstream 8883 15719425 ~ 15719668 (+)
G324794 NA non-coding downstream 174561 15885103 ~ 15886589 (+)
G322645 NA other upstream 1813301 13850287 ~ 13885503 (+)
G321447 NA other upstream 2555361 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 2717253 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 2886439 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 3149690 12548411 ~ 12549119 (+)
G325389 fabp7 other downstream 724711 16435253 ~ 16436882 (+)
G327705 NA other downstream 2553748 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 2716612 18427154 ~ 18428907 (+)
G328474 NA other downstream 3046313 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 3084039 18794581 ~ 18806804 (+)

Expression


Co-expression Network