LOC110522194


Basic Information

Item Value
gene id LOC110522194
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 16373818 ~ 16375853 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473265.2
gaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagtgaaatgtatttggctaaacttccaacttcaactgtatagacaATACATGGTGACTTGAGAGCCCATACTGTGAATCCCTGAGCGTAAAGGCTGAGCAATGACTTTGTTTTGACTGTAGCTGTCTCAGCCTGCTGTATGGTATCTATCTACTATCTATCCATACATTTTGCAGTGGTACAGTAAACTGTCTTTTTCCAAGGACACGTGCATCCACAGTCAGCAACAACAGCTCGACAAAGTGTTGAGAAGTAGGCCAGAGAATAAAAGAAACTTGACTTTGAAGTTCCAGAGCTCCATTTCCTGTTCCACCAGAGGAAAtgctgctgtgtgctgtgtgttgtTTTCTGTGGATCTGACTAATGGCTGGGGGCAGAGTCCCCCCACCATGAGATACACTCATCAACgataaacatcaacaacaacagcagtgaATAATATTTTTTCATAATTATAACTATGTCTTACCTTTCTATTCTTGTATTTTTTTGTCAGGGAAACTTGTTTACTGGTGGTGGAAAGTACTTGTTGGTTAACTGCTCTTCATTATGAGCTTGGTCATATCATCATACCTTTCCCAGTCACTAGGTATAACAAAGCAACGACAAAGACAACCATACCGTATGAGGTTTTAATACCTTAAGTTTACTTGATTTACAACAGTGCTGCTGGCACATTTCAGTGAATTTATTCACTTGTGGAATGTCTTGACAGAGTACAGACCTCAGATATACATGATTCATAAGCACTGAGTATGTGCCAATTATGTGAGCTGTAACAATGTCATTTCCAAAACATTATTCAGAATTGAAATATGTTTTGGGTTGTTTTGTTCTTTAAGACGATTCAGTTTTGTTAATTGCCTGTATTATGCATGACTGTTATTTGAACAAAGACAACACATTTTGCAGTTGTTGTCCCTTGTTTTCAGCGACACTCTGGTGCACTACTGTAGGACTTGAAATATTAGCTATTAACAGACCTGTCAGACATCAGTTGAGATACATGTAATGGGTGGATATAGATTGCACTGCTATGAGATGTGAACGCTCTGTTGATTTCCTGACATGCACGGAGGAAAACAAACTCTACACCTTATGTAACAGCAACAATATTAGATATGTTCCCAAATACTAATTTCAATGTATTTTCTTGCCAAATATACACAagggacattttttattttgggCTATTCCTTTTTTATAGCCCTTTACCCTGGGTTACCTTGTCAGTGCTCTATTCCTACTTTGTGAGACTATTGCTCAACTTTCTCCCTGCTCTGCTGTAGCTCTGTCCTGCAATTAATCACAACAGGATGTCACTGATATGTTTAATGATACTGTTCTTATGTTGTAGTTTTCGTTTTTGAACAGTTTTAATGAAGTCCAAACTCTTATTTAAACAACAgcacattatttattttaaatcccccccaaaatatattttcaaagtaTGTTGTACATGGAGCATAAACCAACTGGTAATACAGTACTTATATAGCTTTGCAGTATTTATATGActtcttattttttcatttctttgttttgttttcagaacAATGTTCACTTGGCGTCTTTTTTTGTCAACCTTGTTAAGTTTTTAGTATACAGTACTTTGAGCAAAACGTGGCTCTGGACAATGCAATGTAAGCATTACGAATTGAGTAAACAAACATGTTAACATTTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473265.2 True 1729 mRNA 0.37 2 16373818 16375853

Neighbor

gene id symbol gene type direction distance location
trdn NA coding upstream 3488 16321616 ~ 16370330 (+)
hddc2 hddc2 coding upstream 300713 16068497 ~ 16073105 (+)
il20ra il20ra coding upstream 424776 15944493 ~ 15949042 (+)
LOC110522177 LOC106607761 coding upstream 492684 15833139 ~ 15881137 (+)
LOC110522178 NA coding upstream 632335 15739094 ~ 15741483 (+)
LOC110522197 NA coding downstream 54890 16430743 ~ 16433428 (+)
serinc1 serinc1 coding downstream 89579 16465432 ~ 16470220 (+)
LOC110520973 LOC106571536 coding downstream 275003 16650856 ~ 16652608 (+)
tbc1d32 tbc1d32 coding downstream 292393 16668246 ~ 16710807 (+)
LOC110522207 LOC106607779 coding downstream 464573 16840426 ~ 17003919 (+)
G325388 NA non-coding upstream 7406 16364560 ~ 16366412 (+)
G325217 NA non-coding upstream 243703 16127669 ~ 16130115 (+)
G325185 NA non-coding upstream 361313 16012304 ~ 16012505 (+)
G324838 NA non-coding upstream 403800 15969753 ~ 15970018 (+)
G324826 NA non-coding upstream 421554 15951491 ~ 15952264 (+)
G325414 NA non-coding downstream 42451 16418304 ~ 16418519 (+)
G325389 fabp7 non-coding downstream 59400 16435253 ~ 16436882 (+)
G325790 NA non-coding downstream 127464 16503317 ~ 16503583 (+)
G325807 NA non-coding downstream 142003 16517856 ~ 16518168 (+)
G322645 NA other upstream 2488315 13850287 ~ 13885503 (+)
G321447 NA other upstream 3230375 13142947 ~ 13143443 (+)
LOC110521046 LOC106607715 other upstream 3392267 12928115 ~ 12981592 (+)
LOC110522108 pm20d2 other upstream 3561453 12800778 ~ 12812377 (+)
LOC110522117 smim8 other upstream 3824704 12548411 ~ 12549119 (+)
G327705 NA other downstream 1888437 18264290 ~ 18304442 (+)
G327995 LOC106607813 other downstream 2051301 18427154 ~ 18428907 (+)
G328474 NA other downstream 2381002 18756855 ~ 18757545 (+)
G328446 LOC106607916 other downstream 2418728 18794581 ~ 18806804 (+)

Expression


Co-expression Network