XLOC_022426 (c1ql4a)


Basic Information

Item Value
gene id XLOC_022426
gene name c1ql4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28399313 ~ 28423222 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044240
AGTCCAGCGCTGTTGCTGTATCATTATTTCTCTCGACAAAACGAACGATAAAAGCGGAAGTTTACTTCACGCGTTCAGTCAAGTCCTTTGGAATAAGGGTCAGAAGAGATTGCAActtatttaagttaacttaacgtTACCTAATTTGTCTGGTTAGAGCTTCTAAAAACGACATTGTGTTGGAATAAATATTGGAGTCTTCGTCTGCTGAAGATGCATATGTTCCTCATTCACCGCTAATTTGCTCCGGAACTCAGCAAATGTAAGGACCGACAACACAGTACGATTTTTTTATCGTAAATATCTTCATTGAGATCGAAGTGAGGCGAGTTTTTCTCAAACTCTGTTCACACTGGCGGGCACCATTCCACCCAAAGGAGAGGAGGACTTTCTAACGCTTGCTGCCTCTCGGCTCAGCCGTCGCAAGCGTGTCATAGGAGCGGGTGTGGGTGTGGCCATGGTTCTGATCCTCCTGGTCACCATCCCTTTACTGGTCCACAGCACaaaaggaggaggagccggcACCTCTGGAAGCCATTATGAAATGCTAGGAAGTTGTCGGATGGTTTGTGACCCCTACACCACATCTCAGGGCCAGGAGCTAACCGCTGTTTCACCTGCACCTCCTGATTTTCCAAACCGGAGAGGGAAATCTGGGTATCGGGGACCTCCTGGTCCACCTGGTCCACAAGGACCACCAGGAGAGCCTGGGAAGCCAGGTCCACAAGGACCCCCAGGTCCTGGGCCTGGCGGTTACGTGCCGTCCTTCTACAGTCCTAAAATTGCCTTTTACGCAGGGCTGCGCAAGCAACATGAAGGCACTGATGTGCTCAAGTTTGATGATGTGGTGACCAATGTGGGCAACTACTATGAGCCAAGCACTGGAAAATTCACATGCCCTCTACCTGGTATCTACTTCTTCACATATCATGTCCTGATGAGAGGAGGAGATGGGACCAGTATGTGGGCAGACCTCAAGAAGAACGGACAGgtgAGGGCCAGCGCTATCGCCCAGGACGCTGACCAGAATTACGACTACGCCTCCAACAGTGTGATCCTGCATTTAGACGTGGGAGACGAGGTCTGTGTGCAGCTGGACGGAGGCAAAGTCCACGGAGGAAACACCAACAAGTACAGCACGTTCTCCGGCTTCCTCATCTACGCCGACTGA
>TCONS_00044241
CTGCGTCTCAAAGCTCAGTCTATAGCGTGGTCTAGGTAGGCAGCACAGCCAGTGAGAGGAGCGCGGATGAGACGAGATGAGAtgggatggagggagggaggagTCGACCGGATGGAGGAATGAGGGggacagtgtgagtgtgtgtgtgaaaatctcaCAGGTGTCGGAGTCAGAAGTCCAGCGCTGTTGCTGTATCATTATTTCTCTCGACAAAACGAACGATAAAAGCGGAAGTTTACTTCACGCGTTCAGTCAAGTCCTTTGGAATAAGGGTCAGAAGAGATTGCAActtatttaagttaacttaacgtTACCTAATTTGTCTGGTTAGAGCTTCTAAAAACGACATTGTGTTGGAATAAATATTGGAGTCTTCGTCTGCTGAAGATGCATATGTTCCTCATTCACCGCTAATTTGCTCCGGAACTCAGCAAATGTAAGGACCGACAACACAGTACGATTTTTTTATCGTAAATATCTTCATTGAGATCGAAGTGAGGCACaaaaggaggaggagccggcACCTCTGGAAGCCATTATGAAATGCTAGGAAGTTGTCGGATGGTTTGTGACCCCTACACCACATCTCAGGGCCAGGAGCTAACCGCTGTTTCACCTGCACCTCCTGATTTTCCAAACCGGAGAGGGAAATCTGGGTATCGGGGACCTCCTGGTCCACCTGGTCCACAAGGACCACCAGGAGAGCCTGGGAAGCCAGGTCCACAAGGACCCCCAGGTCCTGGGCCTGGCGGTTACGTGCCGTCCTTCTACAGTCCTAAAATTGCCTTTTACGCAGGGCTGCGCAAGCAACATGAAGGCACTGATGTGCTCAAGTTTGATGATGTGGTGACCAATGTGGGCAACTACTATGAGCCAAGCACTGGAAAATTCACATGCCCTCTACCTGGTATCTACTTCTTCACATATCATGTCCTGATGAGAGGAGGAGATGGGACCAGTATGTGGGCAGACCTCAAGAAGAACGGACAGgtgAGGGCCAGCGCTATCGCCCAGGACGCTGACCAGAATTACGACTACGCCTCCAACAGTGTGATCCTGCATTTAGACGTGGGAGACGAGGTCTGTGTGCAGCTGGACGGAGGCAAAGTCCACGGAGGAAACACCAACAAGTACAGCACGTTCTCCGGCTTCCTCATCTACGCCGACTGA

Function

symbol description
c1ql4a Orthologous to human C1QL4 (complement C1q like 4).

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-185 Orthologous to human C1QL4 (complement C1q like 4).

Ensembl:

ensembl_id ENSDARG00000011549

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044240 False 1171 mRNA 0.51 3 28399313 28423048
TCONS_00044241 True 1170 mRNA 0.51 3 28399313 28423222

Neighbor

gene id symbol gene type direction distance location
XLOC_022425 neurod4 coding downstream 52274 28343988 ~ 28347039 (-)
XLOC_022424 znf385a coding downstream 104550 28185883 ~ 28294763 (-)
XLOC_022423 tac3a coding downstream 257894 28139489 ~ 28141419 (-)
XLOC_022422 b4galnt1a coding downstream 275546 28097282 ~ 28123767 (-)
XLOC_022421 sp5l coding downstream 373370 28023091 ~ 28025943 (-)
XLOC_022427 NA coding upstream 9953 28433175 ~ 28453703 (-)
XLOC_022428 tmem107l coding upstream 59558 28482780 ~ 28487153 (-)
XLOC_022429 ribc1 coding upstream 262044 28685266 ~ 28692581 (-)
XLOC_022430 dffa coding upstream 379785 28803007 ~ 28808480 (-)
XLOC_022431 casz1 coding upstream 530915 28954137 ~ 29004753 (-)
XLOC_022417 NA non-coding downstream 603390 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 626941 27770481 ~ 27772372 (-)
XLOC_022415 NA non-coding downstream 669859 27727295 ~ 27729454 (-)
XLOC_022412 NA non-coding downstream 723919 27652896 ~ 27675394 (-)
XLOC_022408 CR354381.1 non-coding downstream 819021 27580164 ~ 27580292 (-)
XLOC_022432 CR677617.1 non-coding upstream 762630 29185852 ~ 29257716 (-)
XLOC_022433 NA non-coding upstream 910631 29333853 ~ 29358214 (-)
XLOC_022440 NA non-coding upstream 1251773 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 1397979 29821201 ~ 29822565 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 misc CM030126.1 CM030126.1 14693830 ~ 14715322 (-)