Gene
RNA
| Item | Value |
|---|---|
| gene id | clvs2 |
| gene name | clvs2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 16379356 ~ 16404610 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| clvs2 | Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity. Predicted to be involved in lysosome organization. Predicted to be located in Golgi apparatus and early endosome membrane. Predicted to be active in clathrin-coated vesicle; endosome; and trans-Golgi network. Orthologous to human CLVS2 (clavesin 2). |
| description |
|---|
| PREDICTED: clavesin-2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0007040 | lysosome organization | biological_process |
| GO:0006810 | transport | biological_process |
| GO:0030136 | clathrin-coated vesicle | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005802 | trans-Golgi network | cellular_component |
| GO:0031901 | early endosome membrane | cellular_component |
| GO:0005215 | transporter activity | molecular_function |
| GO:0080025 | phosphatidylinositol-3,5-bisphosphate binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021600391.2 | True | 4662 | mRNA | 0.44 | 5 | 16379356 | 16404610 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nkain2 | nkain2 | coding | downstream | 87851 | 16100930 ~ 16291505 (-) |
| rnf217 | rnf217 | coding | downstream | 254176 | 16019428 ~ 16125180 (-) |
| tpd52l1 | tpd52l1 | coding | downstream | 282325 | 16080986 ~ 16097031 (-) |
| LOC110522184 | NA | coding | downstream | 348819 | 16023822 ~ 16030537 (-) |
| LOC110522183 | LOC106607767 | coding | downstream | 362310 | 16014431 ~ 16017046 (-) |
| LOC110522196 | smpdl3a | coding | upstream | 14623 | 16419233 ~ 16422130 (-) |
| smpdl3a | smpdl3a | coding | upstream | 23099 | 16427709 ~ 16429178 (-) |
| fabp7b | LOC101268926 | coding | upstream | 30881 | 16435491 ~ 16436802 (-) |
| pkib | NA | coding | upstream | 33543 | 16437785 ~ 16459112 (-) |
| LOC110522199 | hsf2 | coding | upstream | 65653 | 16470263 ~ 16474122 (-) |
| G325504 | hddc2 | non-coding | downstream | 306269 | 16035558 ~ 16073087 (-) |
| G325156 | NA | non-coding | downstream | 409374 | 15969778 ~ 15969982 (-) |
| G325150 | NA | non-coding | downstream | 417256 | 15961857 ~ 15962100 (-) |
| G325142 | NA | non-coding | downstream | 428476 | 15950286 ~ 15950880 (-) |
| G325747 | NA | non-coding | upstream | 25802 | 16430412 ~ 16430695 (-) |
| G325755 | NA | non-coding | upstream | 42290 | 16446900 ~ 16498038 (-) |
| G325796 | NA | non-coding | upstream | 101855 | 16506465 ~ 16506680 (-) |
| G325808 | NA | non-coding | upstream | 113251 | 16517861 ~ 16518105 (-) |
| G325696 | NA | other | downstream | 38649 | 16339332 ~ 16340707 (-) |
| G324432 | NA | other | downstream | 1124348 | 15253864 ~ 15255008 (-) |
| G323167 | prs27 | other | downstream | 2192185 | 14128489 ~ 14187171 (-) |
| LOC110522122 | map3k7 | other | downstream | 3196787 | 13173776 ~ 13197235 (-) |
| G325960 | LOC106607776 | other | upstream | 242145 | 16646755 ~ 16662881 (-) |
| vgll2a | LOC106607788 | other | upstream | 1158260 | 17559268 ~ 17566213 (-) |
| G327409 | LOC106607793 | other | upstream | 1390580 | 17795190 ~ 17800469 (-) |
| LOC110522229 | LOC106607809 | other | upstream | 1879167 | 18022013 ~ 18286490 (-) |
| G328236 | NA | other | upstream | 2041973 | 18446583 ~ 18447030 (-) |
