XLOC_022431 (casz1)


Basic Information

Item Value
gene id XLOC_022431
gene name casz1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 28954137 ~ 29004753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044246
ATGCATAGCAAGTTTTCAATCGcaatttttctttctcttttgtcTTTTTCATCAACAGCTGAGAGGAGTTTATGCACTGAAAAGACCTCAGGAAAATCCACGATGGCCGCCAAAAGGAAAGGTGGCCTAAAACTGAATGCGATCTGTGCCAAGCTTAGCCGGCAGGTGGTATACGACGGCAGTTCCCAGAATGCCGAGGGAGACTCAGACCTAGGCGACAGGCCTGAAAGTGACTTCCCAGAGGGCCTGACTCTCACTCAGAGCCTGGAGGAGGACCAGAAGCGGCGCGAGGCCATTGAGAAGTGGGTGAATGGAGAGTACGGAGAGGATCCGCAGTGTTTAGAAGGGGTGGAGCACAGAGTACTCAAACCCAACAACGGAGAAGATGGTCCCCCTGAGGGTGTGTACATGGTACAGCCCAAAGGCTGCAGCGATGAAGAAGACAACGCAGAAGAAGCAGACACCATGCCCGGCTCTCACGAGGGCAGTTATCACGAGGACTCAGAAGGCAGTCCACGCAAAGATGACAATTCCTCTGCACTACGCGACTACGCCGCCAACACCATGAATGAGTTCCTAAACATGTTTGGCTATGATGACCAGCAGGTTCGGGATGAGCTGGCCAAGAAGATCAGCTTTGAGAAGCTGAAAGCAGCTACCTCAGATCCCTCCTCCCTGAGCAGCGAGGAGGCCACCCGTCGAGCTCGATTCTCCAAGTATGAGGAGTACATCCGCAAGCTAAAGGCCGGGGAGACACTGCCCTGGCCTGTGCACACCAAGCCTGAAGTGCTCAACTCCAAAATGACATTGACACCAGAAAAGAGCGCTGCCCTCATCCAGCCGACCCTCACCGCAGGGTCAGAGGGACAGATATTTCCCTCACTTAACCCAGCCCCAACCAACCAGTCACACATACAGAACTTGGCATCCCGTGCATCCAAGTATGATTACTTCATCCAGAAGCTGAAAATGGGCGAGAGTCTCAGAGAGCAAAATGGCAATTCCTACAAGCGGCCCTCCAAGTATGACTTGGAGAACGTCAAATTCCTGCATCTCTTTAAACCAGGAGAGGGCAACCCTGATATGGGTGGCGCCATCGCGTTTAAGACCGGAAAAGTCGGCAGACCGTCAAAGTATGATATACGAAACATACAAAAGCTTATTCCTGGGAAAGTCGATCCTCCGGTCCTGTCTACTGCTCCCGCTGGAGTCGTGGGACCTCCTGGGTTGCCCATGGACCAGGAGGGACACCTAGGTTTTAACACTGACTTCATGAAGTCCAGCTTCTCTAAGACTGACTCCATCACTACTGGAACCGTTTCCTCAGTCAAGAATGGCCTTCCTCCAGAGAAACCTGCCACAGAGGACGTCAACGTGTACCAGAAATATATCGCTAGGTTCTCTGGGAGCCAACACTGTGGCCATGTGCACTGTGCATACCAGTACAGAGAGCATTATCACTGCATGGACCCCGAATGTAACTATCAGAGATTCACCAGTAAGCAGGATGTGATAAGGCATTATAACATGCATAAGAAGAGGGACAACTCCCTGCAGCACGGATTCATGCGCTTCAGCCCTTTGGATGACTGTAGTGTGTACTACCATGGCTGTCATCTCAACGGCAAGAGTACCCACTACCACTGTATGCAGGTGGCCTGCAACAAGGTGTACACAAGCACTTCTGATGTCATGACTCATGAGAACTTCCATAAGAAAAATGCACAGCTGATCAATGATGGCTTCCAGAGGTTTCGTGCCGTTGAAGATTGCGGGACGGTCGGGTGCCAGTTCTACGCACAGAAGACCACCCACTTCCACTGCAGGCGTCCAGGCTGTACCTTCACCTTCAAGAACAAGTGTGACATCGAGAAGCACAAGAGCTATCACATCAAAGACGATGCTTATGCCAAGGACGGCTTCAAGAAGTTTTACAAATACGAGGAGTGCAAGTATGAAGGCTGTGTCTACAGCAAGGCCACCAACCATTTCCACTGCATACGCCAAGGCTGCGGCTTCACCTTTACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCACGAGCGCCGCCACATTCGCTCCTCAGGCGTCCTTGGCCTCACTTCCTCCTTCCTGTTGCCCAAAGAGGAGCAGGATGAGTCCAGCAATGATGACCTCATGGACTACTCTGCCATCAGCAGCAAGAACTCTAGCTTAAGTGCTTCTCCGACGACCCAGCAATCCTCCACCATCCCGCATCTGCTCCCCACTCCCACCACCACCATCGTCAAGCCCACCGCTGCTCTGCCTCCAGCTAGCCGCATTTCGACGCTGCTGTCCCAGGCCCTGCCCAGCAATGTACCCATGGCCCTGGCACTTTCTAACAGCGCACTGGCAGGTGCTTCCAATGCTTTCTTTCCCCTCATTCCCAGAATGCCCATGCCGCTCCCACCCTCTGCCGCTGGTCTAATCTCTGCTGCCACGTCTGTGGCCCACTCCATGCCCAGCGATTCTCTGCCCCAGACCTCAACTCCAACTGGGGACCTGGCTGCTGCTACTGTTGCTTCCACCCCAACTTCCTTCGCTGCGTCATCAATTATGGAGAAGATGTCAGCTAGCAAGGGTCTGATATCGCCCATGATGGCCCGACTGGCAGCCGCTGCCCTGAAGCCCTCCGGTAACCCTGATGCAGGTGACGCTGAATCAAACGGACACCCTGCGCCGGGAAATACATCTCTTTTATCCTCACTTATGAATAAGGTAAGATTCATCCATCAAACGCTTTTCATCCCAAGACAAATTAAAACTGACCTTAATTTACCAGCAATACACATCTTGAactttctctctttctcacatCTGTACAGGTATGACATTGATGATTTCTGTGAAGCCCATTGTGATTTCTTGCACAAGATCCATTTTCATTGCCTGGTGGAGGACTGTGGGGCTCTCTTCAGCACGGTGGACGGAGCCATCAAACACGCCAACTTCCACTTCAGAGCCAACCTGAAGGTTAAATCGGAGCCCCCTTTCAACGAGAGCAAGGAATCCAACGATAGCGGACCTAATCAAATGTCTGCCCCTATTTCCATGGCCAAGACGCCCCCTGTGGAGGTGCCCAGTCTGGCTGTCTCGTCCCCTTCTTTCCAAGCCTGGAAACAGCTAGCCGGTTCGATCCCCCAACTTCCTGCCTCCATGCCCAGTATGCCAGCCACTTCCCCTCTAGCCACCACGTCGCTGGAAAATGCCAAGCCTCAGGTCAAGCCTGGCTTCCTGCAGTTTCAGGACAATGATCCTTGTCTGGCCACCGACTGCAAATACTCCAATAAGTTCCACTTCCACTGTCTGTTTGGAAATTGCAAATATGTGTGTAAGACATCAGGGAAGGCTGAGTCGCATTGCCTGGACCACATTAACCCCAACAACAACCTGGTGAATGTGCGAGACCAGTTCTCCTATTATTCTCTGCAATGCCTTTGTCCTAACCAGCACTGTGAGTTTCGCATGAGGGGCCATTATCATTGTCTGAGACCCGGCTGTTATTTTGTCACCAATATCACCACCAAACTGCCCTGGCACATCAAGAAGCATGAGAAAGCAGAGAGGCGTGCCGCCAACGGCTTCAAATACTTTACCAAAAGAGAAGAATGTGGCAGACATGGGTGCAAATACAACCAAGTTAACAGCCATTTCCATTGTATCCGTGAGGGCTGTCAGTTCTCCTTCCTGCTCAAGCATCAGATGACCTCCCATGCCCGCAAACACATGCGGAGGATGCTGGGTAAAAACTTCGACAGAGTTCCTTCCCAGGACAACGATGACTACATGGATTATACTGCTGGAGGTAGCCCACTGGGCCTCTCCTCAGAATCCTCCAACCAAGACCGCAGTTGTACCAGCACCCCCGTAGGAAACGACAGTTCGCCAGCAGGTAACACCATCTCTATCCCTACGGCAACTGGAGCTAAGAAGCGCTTCTGGATCATCGAAGACATGTCACCCTTCGGCAAGCGTCGCAAAACCGCTTCGTCTCGCAAGATGCTGGATGAAGGCATGATGCTGGAAGGCTTCCGACGCTATGATCTCTATGAGGACTGCAAGGATACGGCCTGCCAGTTCTCCCTGAAGGTCACCCACTATCACTGCACACGGGAGAACTGCGGCTACAAGTTCTGCGGCCGCACTCACATGTACAAGCATGCCCAGCACCACGACCGCGTGGACAACCTGGTCCTAGATGACTTCAAGCGCTTCAAGTCCTCACTGTGCTGTAACTTCCCTGATTGCCAGTTCTCTGGAAACAGCACCCATTTCCACTGCTTGCGCTGTGGCTTCCGCTGTACAGACAGCACCAAGGTGACGGCGCATCGCAAGCATCATGGCAAGCAGGATGTGATCAGTGCTGCCGGATTCTGTCAGTTCAGTTCTAGCGTGGACTGCGAGGTGGCTGACTGCAAGTACAAGCTCAAGTGTTCACACTTCCACTGCACTTACCCAGAGTGCAAGCACACAGTGGTGGGCATGTCCCAAATGGATTCCCACAAGCGCAAGCATGAGAAGCAGGAGAGGGGTGAGCTGCCTTCCGTTTCCCCCAACCAGGATGGCAACCAccatcatcaccaccaccaccaccaccaccatgcAGcacccagaggaaacccacaccaacacggggagaacatgcaaactccacacagaaacgccagctggacttga
>TCONS_00044247
ATGGCCGCCAAAAGGAAAGGTGGCCTAAAACTGAATGCGATCTGTGCCAAGCTTAGCCGGCAGGTGGTATACGACGGCAGTTCCCAGAATGCCGAGGGAGACTCAGACCTAGTGGACAACAGCGAGCGGGGCAGCTTGCACTATGATGAGGGCGACAGGCCTGAAAGTGACTTCCCAGAGGGCCTGACTCTCACTCAGAGCCTGGAGGAGGACCAGAAGCGGCGCGAGGCCATTGAGAAGTGGGTGAATGGAGAGTACGGAGAGGATCCGCAGTGTTTAGAAGGGGTGGAGCACAGAGTACTCAAACCCAACAACGGAGAAGATGGTCCCCCTGAGGGTGTGTACATGGTACAGCCCAAAGGCTGCAGCGATGAAGAAGACAACGCAGAAGAAGCAGACACCATGCCCGGCTCTCACGAGGGCAGTTATCACGAGGACTCAGAAGGCAGTCCACGCAAAGATGACAGCTTCCAGCCCACCACTGAAGCCCCTCCTCGCCCAGCCCCCTTCACCCCACCAGgAGATTCCTCTGCACTACGCGACTACGCCGCCAACACCATGAATGAGTTCCTAAACATGTTTGGCTATGATGACCAGCAGGTTCGGGATGAGCTGGCCAAGAAGATCAGCTTTGAGAAGCTGAAAGCAGCTACCTCAGATCCCTCCTCCCTGAGCAGCGAGGAGGCCACCCGTCGAGCTCGATTCTCCAAGTATGAGGAGTACATCCGCAAGCTAAAGGCCGGGGAGACACTGCCCTGGCCTGTGCACACCAAGCCTGAAGTGCTCAACTCCAAAATGACATTGACACCAGAAAAGAGCGCTGCCCTCATCCAGCCGACCCTCACCGCAGGGTCAGAGGGACAGATATTTCCGCCTGGAATGGACCACAAACAAAGCTCACTTAACCCAGCCCCAACCAACCAGTCACACATACAGAACTTGGCATCCCGTGCATCCAAGTATGATTACTTCATCCAGAAGCTGAAAATGGGCGAGAGTCTCAGAGAGCAAAATGGCAATTCCTACAAGCGGCCCTCCAAGTATGACTTGGAGAACGTCAAATTCCTGCATCTCTTTAAACCAGGAGAGGGCAACCCTGATATGGGTGGCGCCATCGCGTTTAAGACCGGAAAAGTCGGCAGACCGTCAAAGTATGATATACGAAACATACAAAAGCTTATTCCTGGGAAAGTCGATCCTCCGGTCCTGTCTAGTGTTCTCCCAGCAACGGCAGGGACCCCAGGACCACCAGTCATCAATACAGCTGCTCCCGCTGGAGTCGTGGGACCTCCTGGGTTGCCCATGGACCAGGAGGGACACCTAGGTTTTAACACTGACTTCATGAAGTCCAGCTTCTCTAAGACTGACTCCATCACTACTGGAACCGTTTCCTCAGTCAAGAATGGCCTTCCTCCAGAGAAACCTGCCACAGAGGACGTCAACGTGTACCAGAAATATATCGCTAGGTTCTCTGGGAGCCAACACTGTGGCCATGTGCACTGTGCATACCAGTACAGAGAGCATTATCACTGCATGGACCCCGAATGTAACTATCAGAGATTCACCAGTAAGCAGGATGTGATAAGGCATTATAACATGCATAAGAAGAGGGACAACTCCCTGCAGCACGGATTCATGCGCTTCAGCCCTTTGGATGACTGTAGTGTGTACTACCATGGCTGTCATCTCAACGGCAAGAGTACCCACTACCACTGTATGCAGGTGGCCTGCAACAAGGTGTACACAAGCACTTCTGATGTCATGACTCATGAGAACTTCCATAAGAAAAATGCACAGCTGATCAATGATGGCTTCCAGAGGTTTCGTGCCGTTGAAGATTGCGGGACGGTCGGGTGCCAGTTCTACGCACAGAAGACCACCCACTTCCACTGCAGGCGTCCAGGCTGTACCTTCACCTTCAAGAACAAGTGTGACATCGAGAAGCACAAGAGCTATCACATCAAAGACGATGCTTATGCCAAGGACGGCTTCAAGAAGTTTTACAAATACGAGGAGTGCAAGTATGAAGGCTGTGTCTACAGCAAGGCCACCAACCATTTCCACTGCATACGCCAAGGCTGCGGCTTCACCTTTACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCACGAGCGCCGCCACATTCGCTCCTCAGGCGTCCTTGGCCTCACTTCCTCCTTCCTGTTGCCCAAAGAGGAGCAGGATGAGTCCAGCAATGATGACCTCATGGACTACTCTGCCATCAGCAGCAAGAACTCTAGCTTAAGTGCTTCTCCGACGACCCAGCAATCCTCCACCATCCCGCATCTGCTCCCCACTCCCACCACCACCATGTGCTCCAGCCAGAGCGTCAAGCCCACCGCTGCTCTGCCTCCAGCTAGCCGCATTTCGACGCTGCTGTCCCAGGCCCTGCCCAGCAATGTACCCATGGCCCTGGCACTTTCTAACAGCGCACTGGCAGGTGCTTCCAATGCTTTCTTTCCCCTCATTCCCAGAATGCCCATGCCGCTCCCACCCTCTGCCGCTGGTCTAATCTCTGCTGCCACGTCTGTGGCCCACTCCATGCCCAGCGATTCTCTGCCCCAGACCTCAACTCCAACTGGGGACCTGGCTGCTGCTACTGTTGCTTCCACCCCAACTTCCTTCGCTGCGTCATCAATTATGGAGAAGATGTCAGCTAGCAAGGGTCTGATATCGCCCATGATGGCCCGACTGGCAGCCGCTGCCCTGAAGCCCTCCGGTAACCCTGATGCAGGGATGGGGCAGGCAGGCCAGTTTAATCCGGTCGAGGTGAAGCAGGAGCCGGTGGACGGTGCAGCCTCGCAAGAGTCTATCCAGGAGCATAGCCTGGACTTGAGCAAGAAAGACCACAGCGCTGAATCAAACGGACACCCTGCGCCGGGAAATACATCTCTTTTATCCTCACTTATGAATAAGATGAATCCTGGTTTCTTCAACGCTCTGGATTTGAAGTCAGAGCTGGAGGGAGCTCAGGCAGCAGACGGCTCAGACGCAGCTCAGTATCTCAGTAGGGTAATGAAGAGGTCGAGCCCAGAGAAGCCCACTGAGCTGTGGAAAACCTACCTGCGCAGGTATGACATTGATGATTTCTGTGAAGCCCATTGTGATTTCTTGCACAAGATCCATTTTCATTGCCTGGTGGAGGACTGTGGGGCTCTCTTCAGCACGGTGGACGGAGCCATCAAACACGCCAACTTCCACTTCAGAGCCAACCTGAAGGTTAAATCGGAGCCCCCTTTCAACGAGAGCAAGGAATCCAACGATAGCGGACCTAATCAAATGTCTGCCCCTATTTCCATGGCCAAGACGCCCCCTGTGGAGGTGCCCAGTCTGGCTGTGTCAGGGGGCTACAGCTCGTCCCCTTCTTTCCAAGCCTGGAAACAGCTAGCCGGTTCGATCCCCCAACTTCCTGCCTCCATGCCCAGTATGCCAGCCACTTCCCCTCTAGCCACCACGTCGCTGGAAAATGCCAAGCCTCAGGTCAAGCCTGGCTTCCTGCAGTTTCAGGACAATGATCCTTGTCTGGCCACCGACTGCAAATACTCCAATAAGTTCCACTTCCACTGTCTGTTTGGAAATTGCAAATATGTGTGTAAGACATCAGGGAAGGCTGAGTCGCATTGCCTGGACCACATTAACCCCAACAACAACCTGGTGAATGTGCGAGACCAGTTCTCCTATTATTCTCTGCAATGCCTTTGTCCTAACCAGCACTGTGAGTTTCGCATGAGGGGCCATTATCATTGTCTGAGACCCGGCTGTTATTTTGTCACCAATATCACCACCAAACTGCCCTGGCACATCAAGAAGCATGAGAAAGCAGAGAGGCGTGCCGCCAACGGCTTCAAATACTTTACCAAAAGAGAAGAATGTGGCAGACATGGGTGCAAATACAACCAAGTTAACAGCCATTTCCATTGTATCCGTGAGGGCTGTCAGTTCTCCTTCCTGCTCAAGCATCAGATGACCTCCCATGCCCGCAAACACATGCGGAGGATGCTGGGTAAAAACTTCGACAGAGTTCCTTCCCAGGTGGTCTCTCATGCCCACCAACCAGAAGAGATGCAACGCATGGCCAGTCTAGCTTCATCTGGCATGGTAGGCAGCCACCATAATATGAACCCCAACTTCTCCAACATGATGGAGGACAACGATGACTACATGGATTATACTGCTGGAGGTAGCCCACTGGGCCTCTCCTCAGAATCCTCCAACCAAGACCGCAGTTGTACCAGCACCCCCGTAGGAAACGACAGTTCGCCAGCAGGTAACACCATCTCTATCCCTACGGCAACTGGAGCTAAGAAGCGCTTCTGGATCATCGAAGACATGTCACCCTTCGGCAAGCGTCGCAAAACCGCTTCGTCTCGCAAGATGCTGGATGAAGGCATGATGCTGGAAGGCTTCCGACGCTATGATCTCTATGAGGACTGCAAGGATACGGCCTGCCAGTTCTCCCTGAAGGTCACCCACTATCACTGCACACGGGAGAACTGCGGCTACAAGTTCTGCGGCCGCACTCACATGTACAAGCATGCCCAGCACCACGACCGCGTGGACAACCTGGTCCTAGATGACTTCAAGCGCTTCAAGTCCTCACTGTGCTGTAACTTCCCTGATTGCCAGTTCTCTGGAAACAGCACCCATTTCCACTGCTTGCGCTGTGGCTTCCGCTGTACAGACAGCACCAAGGTGACGGCGCATCGCAAGCATCATGGCAAGCAGGATGTGATCAGTGCTGCCGGATTCTGTCAGTTCAGTTCTAGCGTGGACTGCGAGGTGGCTGACTGCAAGTACAAGCTCAAGTGTTCACACTTCCACTGCACTTACCCAGAGTGCAAGCACACAGTGGTGGGCATGTCCCAAATGGATTCCCACAAGCGCAAGCATGAGAAGCAGGAGAGGGGTG

Function

symbol description
casz1 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of neuron differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; cardiovascular system; hindbrain neural plate; musculature system; and nervous system. Orthologous to human CASZ1 (castor zinc finger 1).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-060130-108 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of neuron differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; cardiovascular system; hindbrain neural plate; musculature system; and nervous system. Orthologous to human CASZ1 (castor zinc finger 1).

Ensembl:

ensembl_id ENSDARG00000037030

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044246 False 4701 mRNA 0.53 22 28954137 29004753
TCONS_00044247 True 4933 mRNA 0.54 17 28959560 29003864

Neighbor

gene id symbol gene type direction distance location
XLOC_022430 dffa coding downstream 145657 28803007 ~ 28808480 (-)
XLOC_022429 ribc1 coding downstream 261556 28685266 ~ 28692581 (-)
XLOC_022428 tmem107l coding downstream 466984 28482780 ~ 28487153 (-)
XLOC_022427 NA coding downstream 500434 28433175 ~ 28453703 (-)
XLOC_022426 c1ql4a coding downstream 530915 28399313 ~ 28423222 (-)
XLOC_022432 CR677617.1 coding upstream 181099 29185852 ~ 29257716 (-)
XLOC_022433 NA coding upstream 329100 29333853 ~ 29358214 (-)
XLOC_022434 sst6 coding upstream 370923 29375676 ~ 29376859 (-)
XLOC_022435 pgd coding upstream 376688 29381441 ~ 29394505 (-)
XLOC_022436 kif1b coding upstream 391429 29396182 ~ 29505645 (-)
XLOC_022417 NA non-coding downstream 1158214 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 1181765 27770481 ~ 27772372 (-)
XLOC_022415 NA non-coding downstream 1224683 27727295 ~ 27729454 (-)
XLOC_022412 NA non-coding downstream 1278743 27652896 ~ 27675394 (-)
XLOC_022440 NA non-coding upstream 670242 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 816448 29821201 ~ 29822565 (-)
XLOC_022446 FP101914.1 non-coding upstream 836458 29841211 ~ 29844314 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11397805_11428592 CASZ1 coding CI01000001 null 11397396 ~ 11428663 (-)
bowfin (Amia calva) AMCG00002263 NA coding CM030136.1 CM030136.1 9309416 ~ 9356970 (-)