LOC110522240 (LOC106607916)


Basic Information

Item Value
gene id LOC110522240
gene name LOC106607916
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 18801292 ~ 18812642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600465.2
AAGGACACCATACAGCTCTTACAGATGCGGCGGGCTGATAATGAAACACCTGCACAGGACAATGAGTGGGTTCAGTTTCGAAAAATGATTTATTGGATTTTCCTTAGACCCCCCCAAAAACTCATCCTAATTCACACATCTTTCCAAGCACAGCTTTCTCATCCTAAATGTGACAATTGTATTTGGTGCTAATACAGTAGCCTAGCATAGCCTATAGTTTATTCCGTTTATATTCGATAAACGTTCCACTATGAAACGGTATGTGAGTAGCATTGACAATGCAAAACTGGTGTGACTTCTTTTTCCGTCATCGTTGCTGTAGGCTACGCTATGCGTGTTGAAAAAGTGCCTCCTTTTGAGGCTTCAGTCATTGTGGCTTGAGTCGCGCAACACTGACATTTCAGCACTTTCTTGAAGGGCCAGCTACCGCGCCTCAGACTTGCTTTGGAAAACGGTCATCTTCAATGCCATTTTATCAAGGTGAATATTGAACAAATCCCTGAGAAGCAATGGATAATATTTTAGAGAACGTATCTTTTACTGGACATTCTGTATTTTACAACTTTACTGACGATTGGATACCTGCTGACAGAGAAACTATTGATTTTATTATAAGATGTGTCATACCGACTGTGTATATTCTGATCATAACGATTGGATTGTTGGGGAACATTACCTTGGTTAAGATTTTTATCACCAACAGTGCAATGAGGAGCGTCCCCAACATATTTATTTCGAGTTTGGCAGCTGGGGATCTTTTGCTTTTGGTCACTTGTGTTCCAGTGGATGCGTTCAGATACTTCTTTGAGGAGTGGATCTTCGGTGTTGTGGCTTGCAAACTAATTCCGGTCATTCAACTCACTTCAGTCGGAGTCTCGGTGTTCACTCTCACTGCACTAAGCGCGGACAGGTACAAAGCCATTGTGAATCCTATGGACATCCAGACATCCAGTGCCGTGTTCTGGACATGTCTGAAAGCTGTGTCCATCTGGGTGATCTCCGTCCTGCTGGCGGTGCCCGAGGCCATCTTCTCCCAGGTAGTACACATCCAGGACAAGAATGTGACCTTCACCGCCTGCGTGCCCTATCCCCTTTCCAACGACATGCATCCCAAGATCCACTCCATCCTCATATTCCTGGTGTACTTCCTGATTCCCCTGGGGATCATCTCTGTATACTACTTCCACATCGCCAGGACTCTAGTCAAGAGTGCTCACGACATGCCTGGAGAGATCAGTGAGCACACGAAGAGACAGATGGAGACGAGAAAACGGCTGGCCAAAATTGTTCTGGTTTTTGTGGGCCTCTTCGCTCTTTGCTGGTTCCCCAACCATGTCTTGTACATGTACCGCTCCTTCAACTACCGTCAGATCGACTCCTCTCTGTCGCACCTCATCATCACCCTGCTGGCCCGGGTGCTAAGTTTCTCCAGCTCCTGTGTCAACCCGTTTGCCCTCTACCTGCTGAGCGAGAGTTTCCGAAGGCACTTCAACAGCTCACTGCACTGCAAGAGGAAGCCCCACCACGAACGCAACACTAGCTACCTGCAGCATACCTCAGCCATAAGAATGACCTCCATCAAGAAGACCACCCCTACTGTCATCAACGGACATGGCAACAGGCAGGAGGTCACTCTGTAGGTTTAGGATGTCACCTGATGACATGTAAGTGGTGGGAGTGGCACCAAAAAAAAGTTAGGTGCAAAGCTTTTACAAGGAGAACTATTATGAAAAGGTCATGCATGTGTGCTAAACAGAAAATGCTTTTTTGAAGCTATCTTGTCTATACATTCCCCACAATGCCACATATCACTGCTGATGAGATGATCACCCATGAACTTGTCAACAAATCTGTCTTGAGAGATTCCGGTATCCACAATGTTCCATTTTTCATGTTTTGTTGTGTCAATCTACATGTTTCACTTTACACAGTTTGCATAGATATATACTGTCTGCGAAGCAAACCCAAAGAGCAGGTAGTTGCTCCCACGACAGGAAATCTATGTccctgtgtttttatttatttatttcatctttatttaaccaggtaggctagttgagaacaagttctcatttgcaactgcgacctggccaagacaaagcaaagcagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K04168 NMBR; neuromedin B receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600465.2 True 2110 mRNA 0.45 3 18801292 18812642

Neighbor

gene id symbol gene type direction distance location
LOC110522239 cited2 coding downstream 250711 18547787 ~ 18550581 (-)
LOC110522238 LOC100194707 coding downstream 255686 18523675 ~ 18545606 (-)
LOC110522236 LOC106607814 coding downstream 304055 18473614 ~ 18497237 (-)
LOC110522235 LOC106607813 coding downstream 357570 18427318 ~ 18443722 (-)
esco2 esco2 coding downstream 404866 18391944 ~ 18396426 (-)
LOC110520976 LOC106607917 coding upstream 151748 18964390 ~ 18978387 (-)
LOC110522245 hivep2 coding upstream 207349 19019991 ~ 19119788 (-)
LOC110520978 batf3 coding upstream 429217 19241859 ~ 19243094 (-)
LOC110522252 LOC106607829 coding upstream 515505 19328013 ~ 19453370 (-)
itpkb LOC106607834 coding upstream 770577 19583219 ~ 19637211 (-)
G328761 NA non-coding downstream 4942 18792459 ~ 18796350 (-)
G328808 NA non-coding downstream 20255 18780805 ~ 18781037 (-)
G328796 NA non-coding downstream 33043 18768038 ~ 18768249 (-)
G328793 NA non-coding downstream 39741 18761274 ~ 18761551 (-)
G328792 NA non-coding downstream 41455 18759264 ~ 18759837 (-)
G328893 NA non-coding upstream 104281 18916923 ~ 18921923 (-)
G328912 NA non-coding upstream 137279 18949921 ~ 18952174 (-)
G328973 NA non-coding upstream 217500 19030142 ~ 19030349 (-)
G328985 NA non-coding upstream 238694 19051336 ~ 19051560 (-)
G328987 NA non-coding upstream 240390 19053032 ~ 19053684 (-)
G328236 NA other downstream 354262 18446583 ~ 18447030 (-)
LOC110522229 LOC106607809 other downstream 515882 18022013 ~ 18286490 (-)
G327409 LOC106607793 other downstream 1000823 17795190 ~ 17800469 (-)
vgll2a LOC106607788 other downstream 1235145 17559268 ~ 17566213 (-)
G325960 LOC106607776 other downstream 2138411 16646755 ~ 16662881 (-)
G329663 LOC106607828 other upstream 468496 19281138 ~ 19281481 (-)
G329681 NA other upstream 498451 19311093 ~ 19318679 (-)
LOC110522258 LOC106607836 other upstream 880922 19678324 ~ 19728627 (-)
rcan2 LOC106607629 other upstream 1468484 20166436 ~ 20286886 (-)
LOC110522275 LOC106607631 other upstream 1530527 20328761 ~ 20419762 (-)

Expression

LOC110522240(LOC106607916) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
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LOC110522240(LOC106607916) Expression in each Bioproject

Bar chart with 18 bars.
LOC110522240(LOC106607916) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network