XLOC_022433


Basic Information

Item Value
gene id XLOC_022433
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29333853 ~ 29358214 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044250
GATTACACCGAATGCGCGAGCTGTGCTAACTGTTTCCAACTCGATCAATAATTCAGCACTAAGGCAACAAACGGAGCCGAAACAGAAATTAGTACACCAAAACGACTTAATAAACACACTTGGCAACCAATTAGTTGGCTACACGAGTTGTGGCTATTGTTTACGTGCGACTGTTAGATAACGCGGGGTGCCATTAGCTGAGCTAAGCTAGTTGCTAACCGCGCGCACGCTAGAAATGAATGGGATGTCGCGACGCACCCTTTCCCGCCAGAAAATACGCTAAGCAAATATCACCTCATCGATTGTACCTGATTATCGACCGAATGTGCACAAAACaagtaatttaaagtaattaCACAAAGAAAGCTCGTGGACTATTGCATCCAGTTTCTGCTCCGACCCCCTAAACTGATAAAATGGCCGCCCTGATGCGTCACTGAAGGAATGACGTCATCACTTTGGAGCGTCTCACCACAGCACATGGAGGGGTTTGGAAATGTAacACTTCATTTTGCCTATATGGGGAAATGTGTTGCGGCAGAAGAGAGACTGGATGGGGAGTCCGTCTTCAAGCATGACAGAGGGCGATGTGGAATGTTTTTCTGAGTACATGGAACTTTGGATCCATAGATTGAGAATTGAGGGATTGAGGCTTTGGCTTTCTGGAATATTAAGAATTCAAGTGGGTTTGGTGTCCATGGAGAATCTAAACCATCAGCTTTCGTCATGTGGATTTGCACTGCACAGAGATCTGGACAAAAACTATGTCTTCAGAGTCATGTACAGCGGATGCTTTGTCCAGTTAGAGCACGGAAATTACGTGATTGTGCTGAACCTGTTGAAGAGAGTTAGTCGTTTTGGAGGCAGAACTCAGAAGTTTATGATGAAGTGTCCAGCAGTGTTAGCGCCTCCTAATAGAGAGTACATCCAATGTGATTCAGACTCCATTCAGGTTACCAGAGAGATCCCTGTGGATAATTGGAATAATGagCTCGACTGGTCTCTTGCCTTGAGAGGGAGTCTGGTGGTGGCGTTGGAGGATTCCAGTCTTATTCAAATAAATGTTGAAATGCACAAACCGAACATTACAGTTCAAGGGAGGAGGGACACCATCTTAAGTCCTGTGCAGGTTTTCGCATCTGAAGGTCATTTCTTACCCCTCAAACTGGTCAGTGGCAATTATGCCTACAGCATGGAGGCTACTTGCCCTAACGGGAACACGTCGTCATCTAATGAAACGGTGCTGCATATCTATAAGCGGCGCATGGGTTTGACCAAAAGAGGGGGATATCAAAATGAGACCCTGTCAGTAAGCAGTGTGATGGTGGAGCAGACTGACACGTTTAGCTGGACGGAGACCACTGACTTTGTGCAGCTTATCATTCCTACATCCTACATTCAACAGAATAAGGAGTGTTTAAGTCAAACAGGAGAGAAACTTCAGCAAAATTTCTACAAGATAGACGCTGTCCTCACGTTTAAAGAGACAAATCACAAAATGCACTGGACCATGGAAAACACCTCTCCATGTTCAGAGCTGTTAAAATCACATTCTGTCTATGATGACCCACAAAAAGCCAACTTTACAACACATTCACCAACATGGACTGCAGAAAGGCCTGAAATTCCAGCTGATTACACCACAAACTTGACTCCTTCAGTGTCACCATCGACTACATCTACAGCATTACAGACCGCAGATCCAGACACCGGCACAACCTCAATGCCAACACCACAACTGAAGACAACTGAAGTATTCAACACATCAACTCCTCTTTCATCCCAAGAAGTGTTTTCAAGTACACTTTACAGCCCAAATCACAACTCGACAAGCTCATCTGTACACCAGTGACTGCACAGCGGATGGAAATGCAGGTACCGACTGCacacgtgatttttttttttcatactacACTATTACAATTGGTAGTCCATTAATCAGAGAGCAGATGTAATCACAGTTTGAAATACAGCTACACATTTAAGCGCCATTTTCACTCAGACTGGGATTTACAACACAACAGTCAAGCGGACTCATGCATCTTTTCCGTTGACAAGCAAAGTGCCTTGGAATCACATACGGGGAATGATTACATCTCAGACTGTGTTGGTCATGCTATTTAAATGGACACCTCTCAGCTAGGTGTCTTCCAGGAATAAatgtggtgaatgaggagattctccccaaaaatgtgtaaagcattttgagtgtccagaaaagcgctatataaatgttagcaattattattattaattattattattattattattattataaacgtgGAACTGGACTAAATTGGTATCTAACACAAGAAAGTGGTtgataaattatgtaaaatatgtattaaatgttttagtttaaaatCTGTTCCTGATTtagaaaagtttttctttttaaaaatttaggcaGTTTTATCAGTTGCAGCTAAATGGCTCTCTATTTTTTTCTTGAGCATTtagtattactgtttttttttcagtagtatACTTTAGTACAGATTCTGTATCGTTTGTAGTCATGgaataatatgatttttttttttactgcacaaTTAATCGCTATAGAAATCTCTATCCAAACACCCTCTCTATCATGTTCCTAAATGACAGCTGTTTGTTTATATCTGTTCAGCCACACACTTATAATCTCAGCACTCAAATCTGTGTTTACACTACCGCTGACACAGAGAGTGCAGTTgctatgtataaataaaattgcTTTAGTCTTCTTAACCACACTGTATTGTTATTCACGTCACATAAAAAGTCAGTTATCACAGAATTATTACTAAGATAAAACatagtaaaaatatattaatatataggtCAGATATAATTGAGTTTGTTctagggctgcactatatataatttcagcatcgttATTGCAATATGATCAGTGGACATAGTCACATCATGAGTATACGCACTGTTGAGTCTAGACTATAATTTATTATTTCGCAAGTATTTTTCGAGGCCTGTGACTGAGGATTTTAAAGGATTCAGGCTTAAGGAATTGTACCGTTTTTACTTCattaaaaagttaattttatttaattgtttttaaaactaagactatgtggtattattttacatttgattgttcaactACTATGTACCTGAATACAGTTCAACTCTTAGGAAAAcaataaatcactgtttatttgatttgaattatttttttaaattaattttatctatgcttgtaaattgtttcttatattttatgcatatgtaATCCCCTACATAATTATTTCAATCAATTTTTGCAAATAGTTATGcaagtcatctagtgaaattgtatttatattgcaatatatatatcgcagaattaaaaacaaaaattgcagtgttagatttttccaatatcgcacagccctaatttgTTCACACTTGTTTGTTTGTCCagaatgaaaaactaaataacacAACAGCCTTTGGTGTACTTTTGTGTTCTCAGTGTCATTTTGAAAACTGCATTTAAAgccatttctttttgttttgtatttttatgacaTGTTTGTTTTGGATCCAAATTAAATACTGTGAGGGCTGATTTTAAACACGTTGCTTATCTGTGACATCTGATGGTATGTTTACAAATTGAGAGCTCCTGAAGTGCtcattaaatttaaaaaccatTC
>TCONS_00044739
ACTTTGGAGCGTCTCACCACAGCACATGGAGGGGTTTGGAAATGTAacACTTCATTTTGCCTATATGGGGAAATGTGTTGCGGCAGAAGAGAGACTGGATGGGGAGTCCGTCTTCAAGCATGACAGAGGGCGATGTGGAATGTTTTTCTGAGTACATGGAACTTTGGATCCATAGATTGAGAATTGAGGGATTGAGGCTTTGGCTTTCTGG

Function

GO:

id name namespace
GO:0048477 oogenesis biological_process
GO:1905516 positive regulation of fertilization biological_process
GO:0035803 egg coat formation biological_process
GO:0043902 positive regulation of multi-organism process biological_process
GO:0035036 sperm-egg recognition biological_process
GO:0080154 regulation of fertilization biological_process
GO:2000241 regulation of reproductive process biological_process
GO:0035601 protein deacylation biological_process
GO:0007339 binding of sperm to zona pellucida biological_process
GO:0007340 acrosome reaction biological_process
GO:0009988 cell-cell recognition biological_process
GO:2000344 positive regulation of acrosome reaction biological_process
GO:0060046 regulation of acrosome reaction biological_process
GO:0032190 acrosin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044250 False 3644 lncRNA 0.38 11 29333853 29358214
TCONS_00044739 True 211 lncRNA 0.47 3 29355617 29357759

Neighbor

gene id symbol gene type direction distance location
XLOC_022432 CR677617.1 coding downstream 76137 29185852 ~ 29257716 (-)
XLOC_022431 casz1 coding downstream 329100 28954137 ~ 29004753 (-)
XLOC_022430 dffa coding downstream 525373 28803007 ~ 28808480 (-)
XLOC_022429 ribc1 coding downstream 641272 28685266 ~ 28692581 (-)
XLOC_022428 tmem107l coding downstream 846700 28482780 ~ 28487153 (-)
XLOC_022434 sst6 coding upstream 17462 29375676 ~ 29376859 (-)
XLOC_022435 pgd coding upstream 23227 29381441 ~ 29394505 (-)
XLOC_022436 kif1b coding upstream 37968 29396182 ~ 29505645 (-)
XLOC_022437 ube4b coding upstream 149101 29507315 ~ 29553691 (-)
XLOC_022438 nmnat1-rbp7a coding upstream 196377 29554591 ~ 29569842 (-)
XLOC_022427 NA non-coding downstream 880150 28433175 ~ 28453703 (-)
XLOC_022417 NA non-coding downstream 1537930 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 1561481 27770481 ~ 27772372 (-)
XLOC_022415 NA non-coding downstream 1604399 27727295 ~ 27729454 (-)
XLOC_022440 NA non-coding upstream 316781 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 462987 29821201 ~ 29822565 (-)
XLOC_022446 FP101914.1 non-coding upstream 482997 29841211 ~ 29844314 (-)
XLOC_022448 CU695073.1 non-coding upstream 542437 29900651 ~ 29901235 (-)
XLOC_022449 NA non-coding upstream 651049 30009263 ~ 30010819 (-)

Expression


Co-expression Network