LOC110522248


Basic Information

Item Value
gene id LOC110522248
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 19203072 ~ 19210703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473277.2
ATTTACAGATGATCGCAGAAACACCGATGAATCGTTATCGCTTTGCTTAGTGTTCTGCTTCACACATGCATGTTTGACAGTTAGCAGCTAGCCAGCCACCTAGCCAGGGAGAGGCTATACCAAAGACAGTGCATTATGAAGATCCCTGGGCACACTTGTAGGCGACCTCCGCTAGCAAAACTCATACGTAGAAACACGTTATCGGGTCGTCTCGCGCCGAACTGCGCATATGCAGTTCGTCAACTCAGAGGCACTCTTTctatataaagttgtttttgacgaaaatgaaaacgtgtcagtttgtgaCTCTCACAGGGTTGGAGTCATAACAAGTTCAACTACATAagacattggctcgaatctaAATTGTTCCTTTAGATTTCGAGAAAATTAATGAATAAGTAAGCTCCTATCTTTGGCTATACGGACACTCCTGGTGCCCAAACTGATGACGTATGTAAGTATATCGCGCAGCTGAGAGTCAGGTGTGgaattttgcaattgttttagatgctgCTTGATTCTTGAGGTCAAGACCCGGGCCCTGTATCAGAAAGAAAGTTTAACAAACTCTGAGTTTAAACCTGAACTCTGGGTTGACTAACTCTGAGCTGTCAAACTCAGAGTTTTCGGTTACAGAGCAGGTGATAACAAAGAGTTAAATCAAAGCTTGGTTAACTTGTGCATGAGGAGATAAAGAGCCATCATCAATGGAACGCAGATAACATGATTCATCATGGCAACAGGAGAAAAGGTCTCGAACCTCCTACTGCTCCCCAGTGGAGTTTGAAATGTTAACGAACGCGTATGCAGAATATGTGCATATATTTAAGGAAAAAAAATGCCGTAGCATCAGCAAAATAACGTGAGTTTGCGTGGCAGAAAATTGCTGACCAAGTCAATGCGCACAAAACCTACTTGGCAGACACTGAAGATGAAATATACAAATATACTTCAAACAGGTGTGTACTTTCTTGGTAAACATACCCAAAAGAAAATCTGAGATATACACGAGCGTGAGGCATCAGAGTATATCGCTCAAGCCTGACGTCAGTTCCACTTCGAGAGTAACCAGAGAACGTGCAACATGACAGGTAGGCTACAGATAGTCATCTCACCTTCAGTCTATTAACAGTAACAGGCCCTGAAATCTCCTGCAACAATCATGTCAAATGATTGCGATACTGCTGTGTTGATGATTCATATTTGTGCATTTTGAAACCCtgttgatttttaaaaaatgtatagtgTTGTCAATGCTCCCTACCTTAATTAAGAGAAGCCATTTTACATAATCTGAACTCAGAACCTCACAGCACTGCTGAAGAGCATGTACGTACGCGGTCATGACTTGATAGCTCAGCAAAATTATTAGTTTATTAATGACATCACCTGTTTCTCTTCTAGACCAGCAAATAAACTTTAAATATGGGAGGACCTGAAGATTATCAGTGTTATTATTCTTCTTCTACATGAATTCATTTGAATCAATAACTAAAGTGATTTAATCTGTCATATGGTAATCACCCCCAGGTTTCACCCGAAGTGTCgtggctgtgtacagtgtgttgaTATGTTGATTGTTTTACACCATGTTCAGCTCAATATCATTTGTGGCTACTTATACATGGACAATTCTGTCAGCAAGAATTGAATGGTACGCCTTTAAGCTTTAATGTCTTGTACCCTATGGGGCAGCTTCAATTCCTAGTTACATATTAAGCCTACATTCAGCACCTCCCATGAACTGCAGAAATGAAGGAGTGGACATTTTACTGGTAGACCTGGACTTCTTGGCCTTCTCTGTATGTCTGCATGACACTGGACATCACAGATGGAGGAAGAAATGCACTTATTCTCTGTACCAAGTCACAAAACTCAAGAGGATCGGGTCCTTGGGAAGTTACTGTTCCCTGTCCTTGGTGGGAGAACTGTGTTCCATTGTGGACTGTAGGGTTCTAAACTGCTGCCTTCTTTACCTGGACACTTCAAGGTCAAAGACCCACTGCAtcttctgtcgttctgcccttaacccactgttaactgccttgttcagttgtcattgtaaataagaatttgtttttaactgacttgcctagttaaataaaggttcaatcttTACTGTTCCCCCAAGGCTTAATAAGTCAGCCAGACAGCCCACCATGAATCAGGTCATTTTCCTGTGTCATTATGAAGAAAATCCTGAAAGCCTTATCCCACTTTACATAGCTGTTGCTTTGGTACATTAAAGCTGAAATCTGCCAAAGGAGCCACGGACTGCCCCAGGAgcatttgttgtttttgttttgaggaAATGAGCACCCAGCATTGTGGTGTAAAAAAGAAATCAGCATACATACCCTGCTGTTCTATCGCTCGTGCAATGATGTCCGAGAGATTTTTGTTGGTGTTTGAAGTCTTTGTTGTAATATGTGTTCCACCAATTAGGTGCCTTTTTGAGTAGTGTAACTTTACAATAAACTTTTAGAGAAAAAAGCCCCAGTTTTACAgtatttcacctaattttaacattcttcAATAAAGGGCACACATTCTTAATTATTTTACAACATCAACAGATACAAATAAAAACCATAGcaagtgccaaataaagtgacttcatcttaaatcagccataaatccccttgtggcGAGGTAATGGAAGCTTGTGTGCAGCAGGAAAAGGCAATTGAATTCAAGCGTAAAATATTTCTAGCCTGTATCTATAgctaacagggttgacatgttatgcTTGACCCTTGctgttttccaccacaaaacaccagattattataatttttttatttattttttttcaaattaCAAATAACTTAATTCTATATCAGCATTTTGACTTGTCCATCATTGTCTCACGTCAGATCAGTGCTGATGGCTGTCGCACTGACCTGAGACAAAGGGAGATATTACAATGCTGAATTTTGGCACgcctattattttttttaaatgagatatttatgcacaatttctacttaaaatatcaaaggtcACTTTTATCCTTTGACCAATATCGCAAATGAACTCGGCATTTTCACTGCTATGGATTGCAGCTTTAAGCATAAAGTGAACCAAGTGTCAGTTTGAGTCTAAACAGATTAGTCTTAGTTTTTCCATTCTATTACTGTTGTTGAGGaatcagtgtacaaaacattaggaacaccttgtcTTTCCataagactgaccaggtgaatccgggtgaaatctatgatcccatattgatgtcactagttaaatccacttcaatcagtgtagatgaattgGACGAGACGGGTTGAAGAAGGATTAAAAGATCCAGTGCTGTGCCATCTAGACTGCAATTCCCCATTCAACCTCTAGGTTTACTTTCTGTTCAACAATGTTCTTTACTTCACTGCACTGTTGACTtcatctactttgtctctgtctttGAAATGTCAGTGTTTTTTTCTTATTAAATCATGGAAATTGGAAATGTACTCATATTTCTGTTAGGGAATGGGGGTGGGCCTTAAAGTTAACCTTGAGGTTTGTTAGGGTACTTGAAGTGAGAATGTAGGCCTGTCTATTTCCTCTTTGTAACATAACATTCTGAATAACAACAGAAAATGTAAGTACTGTAGCATTGACATTAAAAATTATAAAATCACGATTTAATATATTCAGTGTCTCTTTTATTTGTGTTTCCTAATATAAATGTAGGTAACTATTTTATGGACCACTTTGCTTCAGGGTCATACTGTCGTC
>XR_005051481.1
ATTTACAGATGATCGCAGAAACACCGATGAATCGTTATCGCTTTGCTTAGTGTTCTGCTTCACACATGCATGTTTGACAGTTAGCAGCTAGCCAGCCACCTAGCCAGGGAGAGGCTATACCAAAGACAGTGCATTATGAAGATCCCTGGGCACACTTGTAGGCGACCTCCGCTAGCAAAACTCATACGTAGAAACACGTTATCGGGTCGTCTCGCGCCGAACTGCGCATATGCAGTTCGTCAACTCAGAGGCACTCTTTctatataaagttgtttttgacgaaaatgaaaacgtgtcagtttgtgaCTCTCACAGGGTTGGAGTCATAACAAGTTCAACTACATAagacattggctcgaatctaAATTGTTCCTTTAGATTTCGAGAAAATTAATGAATAAGTAAGCTCCTATCTTTGGCTATACGGACACTCCTGGTGCCCAAACTGATGACGTATGTAAGTATATCGCGCAGCTGAGAGTCAGGTGTGgaattttgcaattgttttagatgctgCTTGATTCTTGAGGTCAAGACCCGGGCCCTGTATCAGAAAGAAAGTTTAACAAACTCTGAGTTTAAACCTGAACTCTGGGTTGACTAACTCTGAGCTGTCAAACTCAGAGTTTTCGGTTACAGAGCAGGTGATAACAAAGAGTTAAATCAAAGCTTGGTTAACTTGTGCATGAGGAGATAAAGAGCCATCATCAATGGAACGCAGATAACATGATTCATCATGGCAACAGGAGAAAAGGTCTCGAACCTCCTACTGCTCCCCAGTGGAGTTTGAAATGTTAACGAACGCGTATGCAGAATATGTGCATATATTTAAGGAAAAAAAATGCCGTAGCATCAGCAAAATAACGTGAGTTTGCGTGGCAGAAAATTGCTGACCAAGTCAATGCGCACAAAACCTACTTGGCAGACACTGAAGATGAAATATACAAATATACTTCAAACAGGTGTGTACTTTCTTGGTAAACATACCCAAAAGAAAATCTGAGATATACACGAGCGTGAGGCATCAGAGTATATCGCTCAAGCCTGACGTCAGTTCCACTTCGAGAGTAACCAGAGAACGTGCAACATGACAGACCAGCAAATAAACTTTAAATATGGGAGGACCTGAAGATTATCAGTGTTATTATTCTTCTTCTACATGAATTCATTTGAATCAATAACTAAAGTGATTTAATCTGTCATATGGTAATCACCCCCAGGTTTCACCCGAAGTGTCgtggctgtgtacagtgtgttgaTATGTTGATTGTTTTACACCATGTTCAGCTCAATATCATTTGTGGCTACTTATACATGGACAATTCTGTCAGCAAGAATTGAATGGTACGCCTTTAAGCTTTAATGTCTTGTACCCTATGGGGCAGCTTCAATTCCTAGTTACATATTAAGCCTACATTCAGCACCTCCCATGAACTGCAGAAATGAAGGAGTGGACATTTTACTGGTAGACCTGGACTTCTTGGCCTTCTCTGTATGTCTGCATGACACTGGACATCACAGATGGAGGAAGAAATGCACTTATTCTCTGTACCAAGTCACAAAACTCAAGAGGATCGGGTCCTTGGGAAGTTACTGTTCCCTGTCCTTGGTGGGAGAACTGTGTTCCATTGTGGACTGTAGGGTTCTAAACTGCTGCCTTCTTTACCTGGACACTTCAAGGTCAAAGACCCACTGCAtcttctgtcgttctgcccttaacccactgttaactgccttgttcagttgtcattgtaaataagaatttgtttttaactgacttgcctagttaaataaaggttcaatcttTACTGTTCCCCCAAGGCTTAATAAGTCAGCCAGACAGCCCACCATGAATCAGGTCATTTTCCTGTGTCATTATGAAGAAAATCCTGAAAGCCTTATCCCACTTTACATAGCTGTTGCTTTGGTACATTAAAGCTGAAATCTGCCAAAGGAGCCACGGACTGCCCCAGGAgcatttgttgtttttgttttgaggaAATGAGCACCCAGCATTGTGGTGTAAAAAAGAAATCAGCATACATACCCTGCTGTTCTATCGCTCGTGCAATGATGTCCGAGAGATTTTTGTTGGTGTTTGAAGTCTTTGTTGTAATATGTGTTCCACCAATTAGGTGCCTTTTTGAGTAGTGTAACTTTACAATAAACTTTTAGAGAAAAAAGCCCCAGTTTTACAgtatttcacctaattttaacattcttcAATAAAGGGCACACATTCTTAATTATTTTACAACATCAACAGATACAAATAAAAACCATAGcaagtgccaaataaagtgacttcatcttaaatcagccataaatccccttgtggcGAGGTAATGGAAGCTTGTGTGCAGCAGGAAAAGGCAATTGAATTCAAGCGTAAAATATTTCTAGCCTGTATCTATAgctaacagggttgacatgttatgcTTGACCCTTGctgttttccaccacaaaacaccagattattataatttttttatttattttttttcaaattaCAAATAACTTAATTCTATATCAGCATTTTGACTTGTCCATCATTGTCTCACGTCAGATCAGTGCTGATGGCTGTCGCACTGACCTGAGACAAAGGGAGATATTACAATGCTGAATTTTGGCACgcctattattttttttaaatgagatatttatgcacaatttctacttaaaatatcaaaggtcACTTTTATCCTTTGACCAATATCGCAAATGAACTCGGCATTTTCACTGCTATGGATTGCAGCTTTAAGCATAAAGTGAACCAAGTGTCAGTTTGAGTCTAAACAGATTAGTCTTAGTTTTTCCATTCTATTACTGTTGTTGAGGaatcagtgtacaaaacattaggaacaccttgtcTTTCCataagactgaccaggtgaatccgggtgaaatctatgatcccatattgatgtcactagttaaatccacttcaatcagtgtagatgaattgGACGAGACGGGTTGAAGAAGGATTAAAAGATCCAGTGCTGTGCCATCTAGACTGCAATTCCCCATTCAACCTCTAGGTTTACTTTCTGTTCAACAATGTTCTTTACTTCACTGCACTGTTGACTtcatctactttgtctctgtctttGAAATGTCAGTGTTTTTTTCTTATTAAATCATGGAAATTGGAAATGTACTCATATTTCTGTTAGGGAATGGGGGTGGGCCTTAAAGTTAACCTTGAGGTTTGTTAGGGTACTTGAAGTGAGAATGTAGGCCTGTCTATTTCCTCTTTGTAACATAACATTCTGAATAACAACAGAAAATGTAAGTACTGTAGCATTGACATTAAAAATTATAAAATCACGATTTAATATATTCAGTGTCTCTTTTATTTGTGTTTCCTAATATAAATGTAGGTAACTATTTTATGGACCACTTTGCTTCAGGGTCATACTGTCGTC

Function

NR:

description
PREDICTED: peroxisomal biogenesis factor 3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473277.2 False 3741 mRNA 0.39 3 19203072 19210703
XR_005051481.1 True 3428 mRNA 0.39 4 19203072 19210703
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Neighbor

gene id symbol gene type direction distance location
LOC110522246 LOC106607822 coding upstream 13204 19133942 ~ 19189868 (+)
LOC110522247 NA coding upstream 38924 19156782 ~ 19164148 (+)
LOC110522244 LOC106607820 coding upstream 250888 18882852 ~ 18952184 (+)
LOC118964442 NA coding upstream 278337 18916232 ~ 18924735 (+)
LOC110522243 LOC100194664 coding upstream 323376 18831677 ~ 18879696 (+)
LOC110522249 LOC106607825 coding downstream 17599 19228302 ~ 19232153 (+)
LOC110522250 LOC106607827 coding downstream 47857 19258560 ~ 19268556 (+)
LOC110522251 LOC106607828 coding downstream 58631 19269334 ~ 19308960 (+)
LOC110522253 LOC106607831 coding downstream 244299 19455002 ~ 19482862 (+)
LOC110522254 NA coding downstream 274322 19485025 ~ 19488287 (+)
G328696 NA non-coding upstream 47349 19151609 ~ 19155723 (+)
G328680 NA non-coding upstream 73335 19129506 ~ 19129737 (+)
G328677 NA non-coding upstream 78577 19124186 ~ 19124495 (+)
G328673 NA non-coding upstream 83425 19119310 ~ 19119647 (+)
G328669 NA non-coding upstream 88143 19114727 ~ 19114929 (+)
G328749 NA non-coding downstream 31124 19241827 ~ 19243082 (+)
G328697 NA non-coding downstream 39541 19250244 ~ 19251070 (+)
G329124 NA non-coding downstream 117297 19328000 ~ 19328843 (+)
G329213 NA non-coding downstream 265576 19476279 ~ 19477129 (+)
G328446 LOC106607916 other upstream 396268 18794581 ~ 18806804 (+)
G328474 NA other upstream 445527 18756855 ~ 18757545 (+)
G327995 LOC106607813 other upstream 774165 18427154 ~ 18428907 (+)
G327705 NA other upstream 898630 18264290 ~ 18304442 (+)
G329556 NA other downstream 886653 20097356 ~ 20100056 (+)
G329626 NA other downstream 1042064 20252767 ~ 20253911 (+)
G330771 NA other downstream 1609965 20820668 ~ 20821157 (+)

Expression

LOC110522248 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.75.
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LOC110522248 Expression in each Bioproject

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LOC110522248 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 15.
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Co-expression Network