LOC110522254


Basic Information

Item Value
gene id LOC110522254
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 19485025 ~ 19488287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051483.1
tcttcacaaaaaaatacagttttatatctttgtttgaagcctaaaaggtcgcaaagttcaagggggctgaatactttcgcaaggcactgtatatgggtaTTGTGTATATAGAAAAGGCCCCCTAATTGCATGTTCAGGGCAAGTTtaatttcttagctacagtaatACTGGCGGTTATTACTGGGATCATGTTGGGGGAACACTGGTCTGAAAGGAGTTCTTAGGGGCAACTGATATGTTGAGAGAATATACAGCACACAGTATgaaagggctctattcaatccgtagcACTGAAGATCCGCTTTATAGAGCGATTGACAATTAAAGACAATGTTCCCGTGgtcgcggagactgcattcacggtaaacggtatgtcggctcaatcagaaTGAGAGTTTCTCCTACTCTGTACACAAGGGGTAAGTTTCTTTCCCTGGCTGATATGACTGATACTATtttctcctgctgtctgtcttttGCTGCTGACAGTACGCTAAGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGATGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACCCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCTCATTGTCTCATTCTgcttcctgtttttgttttgattAACTTCAGTAAGACTATTTGATCTCCTGAGACAGTCCCTTTCCAGATGTCAGGGAGCTATGAATCTACATGGACACAAATCAGATGACTGTTTTCATGCACGCCAATTAAAGGGATGTATTTGTGAGTCCGATTGCAGCTTCTGATTGTATCACACCTCACATGTGCTCAACAGTTATGCTTCACATGTACACAACCCATTCAATGATAACTACATACACTGGATGCCTGCCTTGTGTTCATCACAACGACTAAATCCATTGTACAGCCCCTTGTAAATGAGAACACACAGTCTTCCCTGTCTAGCTGGTGGAGAATACTCAGACAGCTGCTGGGGTGGCACTCGCTGATCTATAGGCTAATGTGGTGTATCACAAGTGGAGCTGTCGGTGATGTTTGTGCAGTCTCCTCTCTGAGCCATGAATATAGAGAGTTAGAAGGGGTGTGTGCCACGGGTAAATGTAAAGGGGTGTCCTGGGATATGGATCTTTACATTCAGTTGTATTATTCATGATTAACAAAGAGCAGTCTACTTGGTAAACCACAGTAccctgcgtgtgtctgtctgtaccatATGTGCGTGTGTGATTAACAGACTTGCAGAAAACCAGTAGCCATGTTCATGTGTATGTTGTTCTATGTAACTGTTCTCTAGTTGGTGGGAAGTTGGATGGTGAAACATTCCGCATATTATGTTCTGCTTTGAAAACGAAATAAAGCTCATTCATTTATTACAGAG
>TU372636
TGTATATAGAAAAGGCCCCCTAATTGCATGTTCAGGGCAAGTTtaatttcttagctacagtaatACTGGCGGTTATTACTGGGATCATGTTGGGGGAACACTGGTCTGAAAGGAGTTCTTAGGGGCAACTGATATGTTGAGAGAATATACAGCACACAGTATgaaagggctctattcaatccgtagcACTGAAGATCCGCTTTATAGAGCGATTGACAATTAAAGACAATGTTCCCGTGgtcgcggagactgcattcacggtaaacggtatgtcggctcaatcagaaTGAGAGTTTCTCCTACTCTGTACACAAGGGGTAAGTTTCTTTCCCTGGCTGATATGACTGATACTATtttctcctgctgtctgtcttttGCTGCTGACAGTACGCTAAGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCA
>TU372640
TGTATATAGAAAAGGCCCCCTAATTGCATGTTCAGGGCAAGTTtaatttcttagctacagtaatACTGGCGGTTATTACTGGGATCATGTTGGGGGAACACTGGTCTGAAAGGAGTTCTTAGGGGCAACTGATATGTTGAGAGAATATACAGCACACAGTATgaaagggctctattcaatccgtagcACTGAAGATCCGCTTTATAGAGCGATTGACAATTAAAGACAATGTTCCCGTGgtcgcggagactgcattcacggtaaacggtatgtcggctcaatcagaaTGAGAGTTTCTCCTACTCTGTACACAAGGGGTAAGTTTCTTTCCCTGGCTGATATGACTGATACTATtttctcctgctgtctgtcttttGCTGCTGACAGTACGCTAAGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGGACGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGATGCTAGGTATCATGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCTCATTGTCTCATTCTgcttcctgtttttgttttgattAACTTCAGTAAGACTATTTGATCTCCTGAGACAGTCCCTTTCCAGATGTCAGGGAGCTATGAATCTACATGGACACAAATCAGATGACTGTTTTCATGCACGCCAATTAAAGGGATGTATTTGTGAGTCCGATTGCAGCTTCTGATTGTATCACACCTCACATGTGCTCAACAGTTATGCTTCACATGTACACAACCCATTCAATGATAACTACATACACTGGATGCCTGCCTTGTGTTCATCACAACGACTAAATCCATTGTACAGCCCCTTGTAAATGAGAACACACAGTCTTCCCTGTCTAGCTGGTGGAGAATACTCAGACAGCTGCTGGGGTGGCACTCGCTGATCTATAGGCTAATGTGGTGTATCACAAGTGGAGCTGTCGGTGATGTTTGTGCAGTCTCCTCTCTGAGCCATGAATATAGAGAGTTAGAAGGGGTGTGTGCCACGGGTAAATGTAAAGGGGTGTCCTGGGATATGGATCTTTACATTCAGTTGTATTATTCATGATTAACAAAGAGCAGTCTACTTGGTAAACCACAGTAccctgcgtgtgtctgtctgtaccatATGTGCGTGTGTGATTAACAGACTTGCAGAAAACCAGTAGCCATGTTCATGTGTATGTTGTTCTATGTAACTGTTCTCTAGTTGGTGGGAAGTTGGATGGTGAAACATTCCGCATATTATGTTCTGCTTTGAAAACGAAATAAAGCTCATTCATTTAT
>TU372641
TGTATATAGAAAAGGCCCCCTAATTGCATGTTCAGGGCAAGTTtaatttcttagctacagtaatACTGGCGGTTATTACTGGGATCATGTTGGGGGAACACTGGTCTGAAAGGAGTTCTTAGGGGCAACTGATATGTTGAGAGAATATACAGCACACAGTATgaaagggctctattcaatccgtagcACTGAAGATCCGCTTTATAGAGCGATTGACAATTAAAGACAATGTTCCCGTGgtcgcggagactgcattcacggtaaacggtatgtcggctcaatcagaaTGAGAGTTTCTCCTACTCTGTACACAAGGGGTAAGTTTCTTTCCCTGGCTGATATGACTGATACTATtttctcctgctgtctgtcttttGCTGCTGACAGTACGCTAAGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCTCATTGTCTCATTCTgcttcctgtttttgttttgattAACTTCAGTAAGACTATTTGATCTCCTGAGACAGTCCCTTTCCAGATGTCAGGGAGCTATGAATCTACATGGACACAAATCAGATGACTGTTTTCATGCACGCCAATTAAAGGGATGTATTTGTGAGTCCGATTGCAGCTTCTGATTGTATCACACCTCACATGTGCTCAACAGTTATGCTTCACATGTACACAACCCATTCAATGATAACTACATACACTGGATGCCTGCCTTGTGTTCATCACAACGACTAAATCCATTGTACAGCCCCTTGTAAATGAGAACACACAGTCTTCCCTGTCTAGCTGGTGGAGAATACTCAGACAGCTGCTGGGGTGGCACTCGCTGATCTATAGGCTAATGTGGTGTATCACAAGTGGAGCTGTCGGTGATGTTTGTGCAGTCTCCTCTCTGAGCCATGAATATAGAGAGTTAGAAGGGGTGTGTGCCACGGGTAAATGTAAAGGGGTGTCCTGGGATATGGATCTTTACATTCAGTTGTATTATTCATGATTAACAAAGAGCAGTCTACTTGGTAAACCACAGTAccctgcgtgtgtctgtctgtaccatATGTGCGTGTGTGATTAACAGACTTGCAGAAAACCAGTAGCCATGTTCATGTGTATGTTGTTCTATGTAACTGTTCTCTAGTTGGTGGGAAGTTGGATGGTGAAACATTCCGCATATTATGTTCTGCTTTGAAAACGAAATAAAGCTCATTCATTTAT
>TU372638
GTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGGACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAGTCTGTTGCTGCTGACAGTACGCTACGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCTCATTGTCTCATTCTgcttcctgtttttgttttgattAACTTCAGTAAGACTATTTGATCTCCTGAGACAGTCCCTTTCCAGATGTCAGGGAGCTATGAATCTACATGGACACAAATCAGATGACTGTTTTCATGCACGCCAATTAAAGGGATGTATTTGTGAGTCCGATTGCAGCTTCTGATTGTATCACACCTCACATGTGCTCAACAGTTATGCTTCACATGTACACAACCCATTCAATGATAACTACATACACTGGATGCCTGCCTTGTGTTCATCACAACGACTAAATCCATTGTACAGCCCCTTGTAAATGAGAACACACAGTCTTCCCTGTCTAGCTGGTGGAGAATACTCAGACAGCTGCTGGGGTGGCACTCGCTGATCTATAGGCTAATGTGGTGTATCACAAGTGGAGCTGTCGGTGATGTTTGTGCAGTCTCCTCTCTGAGCCATGAATATAGAGAGTTAGAAGGGGTGTGTGCCACGGGTAAATGTAAAGGGGTGTCCTGGGATATGGATCTTTACATTCAGTTGTATTATTCATGATTAACAAAGAGCAGTCTACTTGGTAAACCACAGTAccctgcgtgtgtctgtctgtaccatATGTGCGTGTGTGATTAACAGACTTGCAGAAAACCAGTAGCCATGTTCATGTGTATGTTGTTCTATGTAACTGTTCTCTAGTTGGTGGGAAGTTGGATGGTGAAACATTCCGCATATTATGTTCTGCTTTGAAAACGAAATAAAGCTCATTCATTTAT
>TU372639
GTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCATCAATCTGTTGCTGCTGACAGTACGCTAGGTATCCTGTTGTCTCATTGTCTCATTCTgcttcctgtttttgttttgattAACTTCAGTAAGACTATTTGATCTCCTGAGACAGTCCCTTTCCAGATGTCAGGGAGCTATGAATCTACATGGACACAAATCAGATGACTGTTTTCATGCACGCCAATTAAAGGGATGTATTTGTGAGTCCGATTGCAGCTTCTGATTGTATCACACCTCACATGTGCTCAACAGTTATGCTTCACATGTACACAACCCATTCAATGATAACTACATACACTGGATGCCTGCCTTGTGTTCATCACAACGACTAAATCCATTGTACAGCCCCTTGTAAATGAGAACACACAGTCTTCCCTGTCTAGCTGGTGGAGAATACTCAGACAGCTGCTGGGGTGGCACTCGCTGATCTATAGGCTAATGTGGTGTATCACAAGTGGAGCTGTCGGTGATGTTTGTGCAGTCTCCTCTCTGAGCCATGAATATAGAGAGTTAGAAGGGGTGTGTGCCACGGGTAAATGTAAAGGGGTGTCCTGGGATATGGATCTTTACATTCAGTTGTATTATTCATGATTAACAAAGAGCAGTCTACTTGGTAAACCACAGTAccctgcgtgtgtctgtctgtaccatATGTGCGTGTGTGATTAACAGACTTGCAGAAAACCAGTAGCCATGTTCATGTGTATGTTGTTCTATGTAACTGTTCTCTAGTTGGTGGGAAGTTGGATGGTGAAACATTCCGCATATTATGTTCTGCTTTGAAAACGAAATAAAGCTCATTCATTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051483.1 False 2962 mRNA 0.45 2 19485025 19488287
TU372636 False 538 lncRNA 0.44 2 19485127 19486223
TU372640 False 2079 lncRNA 0.45 3 19485127 19488280
TU372641 False 1348 lncRNA 0.43 4 19485127 19488280
TU372638 False 1082 lncRNA 0.44 2 19486726 19488280
TU372639 True 867 lncRNA 0.43 2 19486726 19488280

Neighbor

gene id symbol gene type direction distance location
LOC110522253 LOC106607831 coding upstream 2163 19455002 ~ 19482862 (+)
LOC110522251 LOC106607828 coding upstream 176065 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 coding upstream 217861 19258560 ~ 19268556 (+)
LOC110522249 LOC106607825 coding upstream 252872 19228302 ~ 19232153 (+)
LOC110522248 NA coding upstream 274322 19203072 ~ 19210703 (+)
LOC110522255 LOC106607833 coding downstream 47510 19535797 ~ 19576849 (+)
LOC110522257 LOC106607835 coding downstream 152222 19640509 ~ 19675856 (+)
LOC118964443 NA coding downstream 224832 19713119 ~ 19724642 (+)
LOC110522261 znf512 coding downstream 312924 19801211 ~ 19811868 (+)
gtf3c2 gtf3c2 coding downstream 323732 19812019 ~ 19833998 (+)
G329213 NA non-coding upstream 7896 19476279 ~ 19477129 (+)
G329124 NA non-coding upstream 156182 19328000 ~ 19328843 (+)
G328697 NA non-coding upstream 233955 19250244 ~ 19251070 (+)
G328749 NA non-coding upstream 241943 19241827 ~ 19243082 (+)
G329280 NA non-coding downstream 86437 19574724 ~ 19629202 (+)
G329291 NA non-coding downstream 102487 19590774 ~ 19593447 (+)
G329296 NA non-coding downstream 105994 19594281 ~ 19597509 (+)
G329345 NA non-coding downstream 194806 19683093 ~ 19684859 (+)
G329287 LOC106607836 non-coding downstream 214992 19703279 ~ 19725455 (+)
LOC110522244 LOC106607820 other upstream 555948 18882852 ~ 18952184 (+)
G328446 LOC106607916 other upstream 678221 18794581 ~ 18806804 (+)
G328474 NA other upstream 727480 18756855 ~ 18757545 (+)
G329556 NA other downstream 609069 20097356 ~ 20100056 (+)
G329626 NA other downstream 764480 20252767 ~ 20253911 (+)
G330771 NA other downstream 1332381 20820668 ~ 20821157 (+)
LOC110522308 LOC106607893 other downstream 2195647 21683716 ~ 21701617 (+)
G332458 LOC106584613 other downstream 3010213 22498500 ~ 22498996 (+)

Expression

LOC110522254 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 30.
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LOC110522254 Expression in each Bioproject

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LOC110522254 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network