XLOC_022434 (sst6)


Basic Information

Item Value
gene id XLOC_022434
gene name sst6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29375676 ~ 29376859 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044251
AAAAACAAGAGATGCTGCAGTCTGAACCGACAAATCCCACAGACCAACACTTCATTTAAGAGCTGATGTACAGTACCTCTCTCAAACATGACAATGGGAGTTAAATGGGACAATCGTGATGTTTTCCACAGAAGCATGTTCCTCATGCGGGTTCTGCTGAGTCTGTTTCCTCTGGTCTTTGTGATCTGGAATGGCGAGGCGTTACCTATACAAGATAAACAATCACAAACCAATGAGATACTGTCCAAGGAAGAGGATGGGTTGAAGATGATAACATATGTGGCAGAGCTGAACCTCACCAGTAAAGAACTGGCTGATCTTGACGCTGAATTGTTGAATGGCAAACTGTGGGAGAAGTCTGATAAACCTTCTAAAGATAAGTCTCCGTGCAAGCTCTTCTTCTGGAAGACCTTCTCCTCGTGTTGAGTCTGGGAAAATGACAGAGCACATGCTGATGAGTGTTTAAATCTACTGTCCTGCCTTTAAAGTTTGCCAATCTAATCATGTATTGTATTGAAATCAAGAGAATGTATCCCGTTGGCTTCTGCTGGAATATACTTTTTTACATACTTTTAACAGAATGATTTATACTGAATGAAACCTCTTTTTGAGTTATCTCCAAATAATACAATGGCCTTTAGCATGCCCCTTTGTACTGTTTGACATCCTGTTTGAAAcatgtaataaaagtaataaatctC
>TCONS_00044252
AGTCTGAACCGACAAATCCCACAGACCAACACTTCATTTAAGAGCTGATAAGCATGTTCCTCATGCGGGTTCTGCTGAGTCTGTTTCCTCTGGTCTTTGTGATCTGGAATGGCGAGGCGTTACCTATACAAGATAAACAATCACAAACCAATGAGATACTGTCCAAGGAAGAGGATGGGTTGAAGATGATAACATATGTGGCAGAGCTGAACCTCACCAGTAAAGAACTGGCTGATCTTGACGCTGAATTGTTGAATGGCAAACTGTGGGAGAAGTCTGATAAACCTTCTAAAGATAAGTCTCCGTGCAAGCTCTTCTTCTGGAAGACCTTCTCCTCGTGTTGAGTCTGGGAAAATGACAGAGCACATGCTGATGAGTGTTTAAATCTACTGTCCTGCCTTTAAAGTTTGCCAATCTAATCATGTATTGTATTGAAATCAAGAGAATGTATCCCGTTGGCTTCTGCTGGAATATACTTTTTTACATACTTTTAACAGAATGATTTATACTGAATGAAACCTCTTTTTGAGTTATCTCCAAATAATACAATGGCCTTTAGCATGCCCCTTTGTACTGTTTGACATCCTGTTTGAAAcatgtaataaaagtaataaatc

Function

symbol description
sst6 Predicted to enable hormone activity. Predicted to be involved in regulation of cell migration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; gill; pleuroperitoneal region; and tail bud.

GO:

id name namespace
GO:0030334 regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-199 Predicted to enable hormone activity. Predicted to be involved in regulation of cell migration. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in brain; gill; pleuroperitoneal region; and tail bud.

Ensembl:

ensembl_id ENSDARG00000093804

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044251 False 701 mRNA 0.40 3 29375676 29376859
TCONS_00044252 True 617 processed_transcript 0.40 3 29375678 29376841

Neighbor

gene id symbol gene type direction distance location
XLOC_022433 NA coding downstream 17462 29333853 ~ 29358214 (-)
XLOC_022432 CR677617.1 coding downstream 117960 29185852 ~ 29257716 (-)
XLOC_022431 casz1 coding downstream 370923 28954137 ~ 29004753 (-)
XLOC_022430 dffa coding downstream 567196 28803007 ~ 28808480 (-)
XLOC_022429 ribc1 coding downstream 683095 28685266 ~ 28692581 (-)
XLOC_022435 pgd coding upstream 4582 29381441 ~ 29394505 (-)
XLOC_022436 kif1b coding upstream 19323 29396182 ~ 29505645 (-)
XLOC_022437 ube4b coding upstream 130456 29507315 ~ 29553691 (-)
XLOC_022438 nmnat1-rbp7a coding upstream 177732 29554591 ~ 29569842 (-)
XLOC_022439 clstn1 coding upstream 203725 29580584 ~ 29668286 (-)
XLOC_022427 NA non-coding downstream 921973 28433175 ~ 28453703 (-)
XLOC_022417 NA non-coding downstream 1579753 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 1603304 27770481 ~ 27772372 (-)
XLOC_022440 NA non-coding upstream 298136 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 444342 29821201 ~ 29822565 (-)
XLOC_022446 FP101914.1 non-coding upstream 464352 29841211 ~ 29844314 (-)
XLOC_022448 CU695073.1 non-coding upstream 523792 29900651 ~ 29901235 (-)
XLOC_022449 NA non-coding upstream 632404 30009263 ~ 30010819 (-)

Expression


Co-expression Network