LOC110522305 (LOC106607921)


Basic Information

Item Value
gene id LOC110522305
gene name LOC106607921
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 21515733 ~ 21520261 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600604.2
AGACTAGAGAACTACCCGAGAGAAGatagtcacagacacacagacagagattaATCAAGGGGGAGGGACTGGAGGTTTATCACTTCATACAAACGCCCCACAGACACAGGTGAGCTGATAAGGCTGTCCGGGGCGCTCATTCAAACACAGAACGTCTGGAGAGCTGTGTGTTCTAACCCAACAGAGaagagtgaaatatattgagTGAGCATAAAGTTACCTCAGGATATAAAGACAGACACAGAGTTGCCCAAAGGCCAACTAGACCCTTCAACTGAGTGACCTTGAACTCACTAACTGACGTTACACACAATCAAGTCAATGCCTCTGAAGAATTCCCTGTACTTGAAATCGGCCACGATGCGCTGGCCCCGCAAGCAGAAGCGCCGTGAGCTTCTGTCAGTCAACATGATCAGCCTACCACTGGGCGACTTCCGTCACCTCTCCCACATCGGATTGGATGCCCACGGTGATACCTTCGGCGACTTCACAGCCTTTCACCGGACTGGTAGTCTCATCCTCCACAGCTCTCAAAGCCACCAGGACCTCTACTGCAAAGGGACCTCCCCAGCCCCACCCAAGCCCCCACGACTCCTCAGCCCAGAAGAGATGGATGCACAGTCCGCCGAAGCCAGAACCCTTCCCCAGGCTTTCAGGCACAATAAGTGCCACTCCCTGCCTTTACTGGAtgatgtggaggtggtggagcATGATGGGTTGTACCAACGAGAGGAGGTAAAGcaggagcaggaagaggagggagggttaACTATGGGTCCGGATGGATTTGAATTAAATGCGGCCCCCCAGCAGGTTCCTTGTCCCCCAGTGGAGGCCTCTCCAGTGGTCGAGGAAGACTCATCTTTTGCCCTGAACCTTGACCTGGGGCCATCCATACTAGAAGATGTCCTGCAGGTGATGGACCAGCTTTACCAGTGAGACTTTGAGAAGGGTGCCCCTCATACATATGATTGTAATATATTTTGTTCTAAGGGCCTTTCAAGAAACCCAAGACACTGTACCAGACACTATACATAGGGAGAACTCCAAACTCCTTCCTTTCTAATGGGAATTGAAAGAGGTTGTGCCATGGATGGACAAATTGGCTGAATCATTGTCAACTGTCAGGATGCTAATCGGCACAATTGTTTTCAATTACTGCCTACATAGAGGACAGATTGTATAATATTTCCTTCTTTTGGATGCAATATTATATAATTAGAGGGATGTGTCATATCTGGGTCAACGCATTGGACATCTACCCTTCTCAGGTGAAAGCTCTGTGAGCCAATGACACCACTCCACCTGGGTCATGTGACCTAATGACGGACAATGTCACATATTTGTATCTAGAGGAGACATGTTGTGAAAGGGAAGAAAGACAGACTGTAAACTATGAGACAGGGCTGTGAGACAGACATTTATGACTGAAGCTTGTCTGACAACTTCTGTGGTGAAACACCGAAAGAACACTGGTTGCTAATGAGAACTAGCTCTCCCATAGTATCTAAGTCAGCTACAGTATGACTCACTCAAGTGTATACGTATAGACCGATCTCTTGTTTTTCTTACCAAGTACTCAAGGGGAAAGTTCACTAACAAACCTTTATGAATATACTACTTTATGCGTCTTTATGACATGGTTTATGGCTTGACTGTGAATAGTATCAGTCTATAAAAGTTTCTTCGGAAAAGCAAAGATCACCAACAATCCTTTTCCCATATCATAATCTGTTAGACTAAAGTGGAGCATGAACTCTGCCCAGCACAATGAAAGCACATTGTGTTTAAACTCTATAGAGTAAGCTTTCATTTgtgaaataaaaaacagaaaggtAAGATAGTGCTTACTTTTTGCATCTGAGCCAATTTATTCTTTAACATCACTGCTTCCTCCTGGTGGCCCATCTTCTAACAACTATCACATCCATTTGTCTTTCTACACCACCTGAAGGACATATTTCACAGCCTTATATTGGCTGGTATGTGCATCTTCAGTACTTCATGGTCCAATGGGTCAATGTCCATTATTTAAATATATTCGTTTTTATAAATCTCCCTCAAGCTTTTTGACAGAAACTACTGTATCAAGAATAATCCAGAGCAAATTACAGTTGAGTACCTACTTGTTTTACTTGTTTTTACTAGGGACCACAACGCTACTTTGCCCCATAACAAATATACATTTAATAAGATCTATAGTCAGTATGGCCATCCATGTTATTATAATGCATTCTTTATTTATCACACTCATTTCACTCCCTGTATCCTATGTAATATCCTCCATTTTGTTCCCTCGACTCTTGGGATTCATGCAATCTCAACAATGGGACTGAGGCACAACCACACCAATTATTGTGTTCTGCATCTGTGTGAGATAACATGAATCAGCTTGTTGTCTGTGGAAGATACACTGTGTTTACCCGCTGCAAACCCATTCAAATACACGGCTGTTCTCAACAAGTCTGCCTTTTTGAGCAGACTCTCCTTCACAGGCTTGGTAGAAGCCTGGGCACGGCATAGGTTGTCAGAAAACCGACGctgttccaaaaacatccgttGTGAATGTTGACATGGCCATTTTATTGGAATAATTCATCCAGGCTACTATTTTATGGGTTGGCTTAAATAAAGGTAACTGATGAAGGGTTATCGTA

Function

NR:

description
cdc42 effector protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600604.2 True 2657 mRNA 0.44 2 21515733 21520261

Neighbor

gene id symbol gene type direction distance location
LOC110522302 LOC106607888 coding upstream 17651 21481326 ~ 21498082 (+)
LOC110521058 tlr5 coding upstream 120944 21371782 ~ 21394789 (+)
trnas-gcu-4 NA coding upstream 201768 21313884 ~ 21313965 (+)
LOC110521056 LOC106607877 coding upstream 213537 21290133 ~ 21302196 (+)
LOC110522291 LOC106607878 coding upstream 231879 21272273 ~ 21283854 (+)
LOC110521060 LOC106607633 coding downstream 5813 21526074 ~ 21556088 (+)
LOC110522301 adssl1 coding downstream 36223 21556484 ~ 21569799 (+)
LOC110522300 LOC106607890 coding downstream 59483 21579744 ~ 21647839 (+)
LOC110522307 LOC106607891 coding downstream 129624 21649885 ~ 21682197 (+)
LOC110522308 LOC106607893 coding downstream 163455 21683716 ~ 21701617 (+)
G331320 LOC106607886 non-coding upstream 38354 21473481 ~ 21477379 (+)
G331288 NA non-coding upstream 92121 21423408 ~ 21423612 (+)
G331285 NA non-coding upstream 96088 21419411 ~ 21419645 (+)
G331280 NA non-coding upstream 107748 21407772 ~ 21407985 (+)
G331279 NA non-coding upstream 108043 21407457 ~ 21407690 (+)
G331913 NA non-coding downstream 236857 21757118 ~ 21757385 (+)
G331914 NA non-coding downstream 237460 21757721 ~ 21758033 (+)
G331921 NA non-coding downstream 243868 21764129 ~ 21780103 (+)
G331930 NA non-coding downstream 273534 21793795 ~ 21796979 (+)
G330771 NA other upstream 694576 20820668 ~ 20821157 (+)
G329626 NA other upstream 1261822 20252767 ~ 20253911 (+)
G329556 NA other upstream 1415677 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2245208 19269334 ~ 19308960 (+)
LOC110522250 LOC106607827 other upstream 2247177 19258560 ~ 19268556 (+)
G332458 LOC106584613 other downstream 978239 22498500 ~ 22498996 (+)
G332507 NA other downstream 1072669 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 1435618 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 2225568 23745535 ~ 23748393 (+)

Expression


Co-expression Network