XLOC_022440


Basic Information

Item Value
gene id XLOC_022440
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29674995 ~ 29706359 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044740
TTTTGAAAtctcttagttttatttgaagttatcgTAAATTTGAGCATATTTTAAGAGTttaatatgaagagttcagatgcaaaaacctctaaatgccatctaaaatgtCCTCCTAAAaggagcatttttctcaggctcctatgtttatgttcagatatttaattttaaaggcaatgaaaagaataCCACTATAAAAGTAAGTCCacacacaggagttggagaaaaatgctaattttggaTGAAAATATTAATTGGCgtttagagatttttgcatctaaaatcttcatatacagttgattgaTCTCAGAACTAATTTGAGAACAGTTATTGTTTACTGagcatgggtgcttctgcaaggtgAGAATCTTAAAACTCAAAAGCCTTACAAgaaaatcttctaaatcttcaTACTAAAATGAAGATTTAACTCTAACAAGTCTtactaataattttaaacacCTAGGATTACTTTTATTGCCAACATTTCCTTCTTTTAATTCAATCCCCTCTTAACTTCAAATCACTTAAACAAGcagttggaccaacacaattccttcatgttgttccaacacaaaacACTTAAACTAACTTAAtgctttacaaatttaagtagactgaacataaaacaaataaattgaccAAATAAATTACATGgattgtgttgtttctgctcattttaaacaggtagtttgaacaagcagcagtaatcatTTTTGAGTGCTTCTGAATAACAAGGAACTGCATGACTTCTGCAATGTCAGGACCTCACACAAGAGCCGGAGAGCTGAAAGCCTATTATCTGCCAACACTTTCGACAGGGAACTGTTATCTGTTTTCATGTCTCAGAGCTAGTTTTAaagacacacgcgcacacacaacagAGTCTCTCTACTTTTGTGGTTTTAAAATCAGGGCAGATTCAAGAacaaacatacactcacacacaaaaaacaaagaacGTCTACAAAGAGTTTGAGAGGAAAACAGTGCCTCTATTATAAACCAAAGAGAATCATCAATCAGAAAGAGAGAAAAGATTGAAAATGCACAATACGGCATTGACAGAAATCATCATGCACTCAGAGACAAAGTTTCCTCCTCTGTTTAAAGATGCAGAATAACTGTTTCCAATTGAGAAGGAAGTTTCATAATAACTGCTTCTAATGAAAGTGACAGGTATATTTAATTTAGAGATTTTTCCAAATGTTCATATTGTTCAAATTCTTTTGGGGTTCGGTGAAATAATTATACAGTGAAATATTCTTAAGatttgaaattaatatttgtctatattattatttaaagctgtcacggtggcgcagcgggtagcaggattgcctcacagcaagaaggtcgcgggttcgagcctcagctggctccgttttcccccacagtccaaagacgtggtataggtgaattgggtaagctaaattgtctgtagtgtatgtatgtaaatgagtgtgtatgggtgtttcccagtcctgggttgcagctggaggggcatccgctgcgtaaaacatatgctggataagttggtggttcattccgctgtggcgtcccaatattaataaagggactaagttgaaaagaaaatgaattaatcaattaatatgCAGAGCTactttttcagcatcattactttgtcgaatgatccttcagaaatcattctaataagTTGAattgctcaagaaacatttattattattataaaggttGAAAACCCc

Function

GO:

id name namespace
GO:0044260 cellular macromolecule metabolic process biological_process

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044740 True 1724 lncRNA 0.35 2 29674995 29706359

Neighbor

gene id symbol gene type direction distance location
XLOC_022439 clstn1 coding downstream 6709 29580584 ~ 29668286 (-)
XLOC_022438 nmnat1-rbp7a coding downstream 105153 29554591 ~ 29569842 (-)
XLOC_022437 ube4b coding downstream 121304 29507315 ~ 29553691 (-)
XLOC_022436 kif1b coding downstream 169350 29396182 ~ 29505645 (-)
XLOC_022435 pgd coding downstream 280490 29381441 ~ 29394505 (-)
XLOC_022441 ctnnbip1 coding upstream 5210 29711569 ~ 29751730 (-)
XLOC_022442 pik3cd coding upstream 50244 29756603 ~ 29812667 (-)
XLOC_022443 NA coding upstream 114842 29821201 ~ 29822565 (-)
XLOC_022444 zgc:194189 coding upstream 116927 29823286 ~ 29824146 (-)
XLOC_022445 tmem201 coding upstream 120775 29827134 ~ 29858087 (-)
XLOC_022433 NA non-coding downstream 316781 29333853 ~ 29358214 (-)
XLOC_022432 CR677617.1 non-coding downstream 417279 29185852 ~ 29257716 (-)
XLOC_022427 NA non-coding downstream 1221292 28433175 ~ 28453703 (-)
XLOC_022417 NA non-coding downstream 1879072 27788369 ~ 27795923 (-)
XLOC_022416 NA non-coding downstream 1902623 27770481 ~ 27772372 (-)
XLOC_022446 FP101914.1 non-coding upstream 134852 29841211 ~ 29844314 (-)
XLOC_022448 CU695073.1 non-coding upstream 194292 29900651 ~ 29901235 (-)
XLOC_022449 NA non-coding upstream 302904 30009263 ~ 30010819 (-)
XLOC_022451 NA non-coding upstream 348075 30054434 ~ 30059176 (-)

Expression


Co-expression Network