mrps18a (LOC106607900)


Basic Information

Item Value
gene id mrps18a
gene name LOC106607900
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22089991 ~ 22099593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975894.1
TTATagcagagaagaagaaaaaggtcAACATTCCAAGATGGCACCGCGCTGTGTGCTTGGGTACATATGGATCTCTCTTTCTGGGTTTAAATGTGTTGCCAGCTGCAGCAATATGAGTGCCTTTCAGAGGAAAACAAGTTGCCCTCAGCTCTCGGTTTTTGGAAATATTCAAAGCAGAGGAATTCGACACAAGGGAACAACTGAGGATACCCCAAGTGGACCACAGCCACCCAATGCCACAGCCCAGTGCCCCATCTATCGATGGAACCTGCAGAACAAATACAACTACACAGTAAGTGTTTCAGTGATACCTGACTGCATACTTACTGCCTCTCGACTGTTCTGCCAGAATAACAGAGATGTCCTGTTGCTCAGTCAGTTCATCAGGTCTGATGGAGGAATGCTGCCTCGTAGAGTCACTGGTCTCTGTGCCCAGGAGCACCGCAAGATCGCCATCTGTGTGCAGATGGCTCACAGAGCAgGTCTGCTCCCAGATCACAAACCAACACTACCAGAGGGACACATCCCAAAGAAGCCCAAGCCACAGCTCAACAGATATCTGACTCGCTGGTCCATTGATTCAGTGAAGCCCATCTATAGGACggggctgaagtggtgtaaaaaCCGCAACTCTGTCGGCCACCCAGCTCTCGGAAACAACGTACAGTACGGCAAGAAAATCCTCTACCTGAAACATTGATGACCTGGGGGCATGTCAACTCATAGCAGCAGGAGTCAGTGTGGGCGGGACAgagatggggtacaacagttctATTGGACGTCCTTCCTTATAGTACTCCTGGCCCATTTGGAGCTCCATTGACTTCGAGAACTAGCCATTGGAAAAGCTGGGGGAGCATCTGTATTTGTCCAGCCTTTTTATCTATTGGTGGACATTGCCCATTAGAAACCCATTCTGTCATTTGACCTTTTTGAAGATGCCCTGAAACAAAACTATTAAACTCCACATTtaggggctctattcaatccgcatcGCGGCAGTTCAGCTTTACAGCGTGATTGatattttaaaggcaatgttccagctttaccagagactgcattcacggtaaccactgcatatgtcagctcaatcgggcattacctttacatttctattgcggaatctgtaacgcttcagcaaTACAGATTGACTAGAGCCCTTGCTGTAAGATCAATTGGGTCAGTGTTACACTGTTTTGATGTAGGTGGGATGTTGTACTTCAAGACAACCCAGATGTGCAAATAAATCGGATTTGCTTTTTCTCCCTC
>XM_021600626.2
TagcagagaagaagaaaaaggtcAACATTCCAAGATGGCACCGCGCTGTGTGCTTGGGTACATATGGATCTCTCTTTCTGGGTTTAAATGTGTTGCCAGCTGCAGCAATATGAGTGCCTTTCAGAGGAAAACAAGTTGCCCTCAGCTCTCGGTTTTTGGAAATATTCAAAGCAGAGGAATTCGACACAAGGGAACAACTGAGGATACCCCAAGTGGACCACAGCCACCCAATGCCACAGCCCAGTGCCCCATCTATCGATGGAACCTGCAGAACAAATACAACTACACAGATGTCCTGTTGCTCAGTCAGTTCATCAGGTCTGATGGAGGAATGCTGCCTCGTAGAGTCACTGGTCTCTGTGCCCAGGAGCACCGCAAGATCGCCATCTGTGTGCAGATGGCTCACAGAGCAgGTCTGCTCCCAGATCACAAACCAACACTACCAGAGGGACACATCCCAAAGAAGCCCAAGCCACAGCTCAACAGATATCTGACTCGCTGGTCCATTGATTCAGTGAAGCCCATCTATAGGACggggctgaagtggtgtaaaaaCCGCAACTCTGTCGGCCACCCAGCTCTCGGAAACAACGTACAGTACGGCAAGAAAATCCTCTACCTGAAACATTGATGACCTGGGGGCATGTCAACTCATAGCAGCAGGAGTCAGTGTGGGCGGGACAgagatggggtacaacagttctATTGGACGTCCTTCCTTATAGTACTCCTGGCCCATTTGGAGCTCCATTGACTTCGAGAACTAGCCATTGGAAAAGCTGGGGGAGCATCTGTATTTGTCCAGCCTTTTTATCTATTGGTGGACATTGCCCATTAGAAACCCATTCTGTCATTTGACCTTTTTGAAGATGCCCTGAAACAAAACTATTAAACTCCACATTtaggggctctattcaatccgcatcGCGGCAGTTCAGCTTTACAGCGTGATTGatattttaaaggcaatgttccagctttaccagagactgcattcacggtaaccactgcatatgtcagctcaatcgggcattacctttacatttctattgcggaatctgtaacgcttcagcaaTACAGATTGACTAGAGCCCTTGCTGTAAGATCAATTGGGTCAGTGTTACACTGTTTTGATGTAGGTGGGATGTTGTACTTCAAGACAACCCAGATGTGCAAATAAATCGGATTTGCTTTTTCTCCCTC

Function

NR:

description
39S ribosomal protein S18a, mitochondrial-like

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975894.1 False 1272 mRNA 0.47 5 22089991 22099593
XM_021600626.2 True 1203 mRNA 0.47 5 22089994 22099593

Neighbor

gene id symbol gene type direction distance location
LOC110522310 LOC106607894 coding upstream 342886 21701928 ~ 21747105 (+)
LOC110522308 LOC106607893 coding upstream 388374 21683716 ~ 21701617 (+)
LOC110522307 LOC106607891 coding upstream 407794 21649885 ~ 21682197 (+)
LOC110522300 LOC106607890 coding upstream 442152 21579744 ~ 21647839 (+)
LOC110522301 adssl1 coding upstream 520192 21556484 ~ 21569799 (+)
pou3f2a LOC106571484 coding downstream 82354 22181947 ~ 22185746 (+)
LOC110522322 LOC106607944 coding downstream 119827 22219420 ~ 22262486 (+)
LOC110522327 LOC106607943 coding downstream 207365 22306958 ~ 22312299 (+)
LOC110522328 elovl4 coding downstream 321005 22420598 ~ 22432975 (+)
LOC118964449 NA coding downstream 347296 22446889 ~ 22447725 (+)
G332235 NA non-coding upstream 27818 22061955 ~ 22062173 (+)
G332155 NA non-coding upstream 84945 22002310 ~ 22005046 (+)
G332107 NA non-coding upstream 119618 21969890 ~ 21970373 (+)
G332065 NA non-coding upstream 166576 21922014 ~ 21923415 (+)
G332069 NA non-coding upstream 182650 21907031 ~ 21907341 (+)
G332270 NA non-coding downstream 39625 22139218 ~ 22139456 (+)
G332272 NA non-coding downstream 44849 22144442 ~ 22144647 (+)
G332339 NA non-coding downstream 203690 22303283 ~ 22320447 (+)
G332393 NA non-coding downstream 299231 22398824 ~ 22399335 (+)
G332396 NA non-coding downstream 303227 22402820 ~ 22403030 (+)
G330771 NA other upstream 1268834 20820668 ~ 20821157 (+)
G329626 NA other upstream 1836080 20252767 ~ 20253911 (+)
G329556 NA other upstream 1989935 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2819466 19269334 ~ 19308960 (+)
G332458 LOC106584613 other downstream 398907 22498500 ~ 22498996 (+)
G332507 NA other downstream 493337 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 856286 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 1646236 23745535 ~ 23748393 (+)
G334116 NA other downstream 1734228 23833821 ~ 23837875 (+)

Expression


Co-expression Network