pou3f2a (LOC106571484)


Basic Information

Item Value
gene id pou3f2a
gene name LOC106571484
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22181947 ~ 22185746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600628.2
GTCAACTGTTCTTGGCCAATAAAGAGCTGAGCGAGGCGGACCTCAGGTGTGCGCCTCTACGTCCCCTTGGCACCGCGCCCGGGAGATCGAGAGCGAAACCTAGCTAGCTGCCCGGTGGCGGAAAATAGTAACTGTCAAAGGCAGCTCCTTTAACGACAGAGCTATCACTCCGGCTCCGAGAGTTATGGCGACCGCAGCGTCCAACCACTACAGTGTCCTGACTACCGCCAGCAGCGCGCCGCGGCAGCACTCGGAGTCCGGGAGCATGCAGCAGGCAGCGGTGTATAGGGACGCGCACACCCTGCTCCAGAACGACTACACGCTACCGGGCAGCGGTCATCCGCTTAGCCACGCTCACCAGTGGATCACGGCTCTGTCGCACGGGGACGGGGCTCCGTGGCCGTCGAGTCTCCTCGGAGAGCAGGACGTGAAGCCCATTCTGCAAAGCGACCGAGAGGAGCTGCAGAATTCCGCTAGtctgcagcaacagcagcagcgacACCCTCACCTAGCGCACCAGGCACATCACGACGCCAGGGCATGGCGAACAAGCACGGCCTCTACGCACATTCCCGGTATGGCTACATCTGATGGCCAGAGCCTGGTGTACTCCCAGTCTGGGTTCGGCCTGGGAGGACCAGAGCAGATGCACCACCACTCTCTGCAGGAGGAAGACCACCACAGCCACAGCCCACATTTGAGCGAGCATGGAGGCGGGGTACAGTCGTCCCTCTCTCACCACCAGCAAGGGGGACACCCGGAAAACTCGGACGAGGACACGCCGACCTCGGACGACCTGGAGCAGTTTGCCAAGCAGTTCAAGCAGCGGCGCATCAAACTGGGCTTTACCCAAGCTGACGTGGGGCTGGCGCTGGGGACCCTTTATGGAAATGTATTTTCTCAAACCACTATCTGCAGATTCGAGGCGCTTCAACTGAGCTTCAAAAACATGTGTAAACTCAAACCACTGCTTAACAAATGGCTGGAGGAGGCGGATTCCACCTCGGGGAGCCCCACCAGCCTGGATAAGATCGCGGCGCaggggaggaagagaaaaaaAAGGACCTCCATCGAGGTGGGCATAAAGGGGGCTTTGGagagccattttctcaaaagtccCAAACCAGGCGGCGCGGAGATCACCTCCATAGCGGACAGCCTGCAGCTGGAGAAGGAGGTGGTGAGGGTTTGGTTTTGTAACAGGCGgcagaaggagaagaggatgacGCCCATTGGAGGACAGTTACCGGGAACGGAGGACATGTATGGGGACACACCACCTCACCACGGCGCTCAAACCCCGGTACAATGACCTTAAACCCGTTATAACACATGGACCCCTAAAGGATATGAATGCCCCCCTGTGTTTTTCTGTGCCGGACCAGTTAGCATTGGACCGTAGCCAGCCCAGTGCTAATGTTGGACCTATATGGAACACAGTGGGGATACCGAGTGTTAGAACTCGAGCACTACACCCCAGACACACAGAAATCGAGAGCTATGGGGAGTTTTCATGCAGTGGAGATGTGACACGCAATTTCTGGCTACATGGACCGTGGTTGGTGTGTGCTAACCAAAAAAGGTTCAATATCATTGACATCAAATCGATTTTATAGTCAAGGCGCCAATATGTCATAATGTGTAAAAATAAAGACAGTATAGGCTGTGTGCACGAACCTACCCACGGGAAACAAGCATAGAAGTCGCAGCCGACAGTCGGTAAATAAACGCCATCTTTCCCTAATAACAAAAGCAACAGGGGTTTAACACGGTCGAAGCTCAATACACCTGCTGCACCATTAAATAAAAGCCAATACTATCACCAGCATATTATTATTAGGCCTATTGTTATTATCATGGTAGGTATTATTGTAATAAACATTATTAGTCATGTTTCTATGACAAAGGCAAAGCATAGGCCTATAGGCAATAGGCTAATGTTTATTTACATAGAACAGGGTCATAACGTATGCCTGCATGGACACATGGGGACATGGAATATATTGACATGTATTTTGAGAAATATTGAATCAAGTTCATTTCAATTCAACATGTCATGATTAGTTTCAGTTTAACTAACTATATTTGAATTGCAGTTTGTTAATTACCATACAATAGTAAACACAgcatatcctgtactgtagacaACATATTTACCAAGGCACAATATGTCAGTTATAGTCTATAATGTGATCAGATTGTATCCcaataataaatacataaataaataaataaataatacataaaatTAAAGTATCCATAATTTGTAATAtatcataaaataggcctacataataataataataataataatacagtaataataattGTGTCTTGTGTATACCTTGCGAGACACACACCATGTATGAGGTCAAAATTAATTTAATTTTCTCTTGACACCACATGTCGTGTCCATCATGTGTACATTTCTGCGCGCCTGTTTACAGTAGCCTATGTCTTGTGTTTGTATATTTATTTGTGTTTCCAAAATCCTGTGATCAGAAAGACCGAGAGACTGTAAGGACCATACCATATCACTGAAGCCTGCCCTCTGCCTTCGTTTCGTAAGAAGATAATAACGGAATATATCTGTACCAGCTTTGTCTTCAGTGGCGCCAATTAATCTAGACAATGATTAATTCACCAAGAAGAATTGTTCGTGGGATGTAACTTACATTTGTTTTTGTATCgctttgtatgtttgtttgttgaATTTTCTCTTGTCAGACCAGTGCCAAAGCACAAACACGTACGTGCACGTGCTCTTGTGCCGCTCAACTCGTGATATACATGTGACAGcatgcagggttggggtcaactTTGGCAATTCCTGGAGTCAAAATTGGTTCATTATTTCAAGAATTTCGATTTAAAATTGAATGGAATCAGGAGGAGGCTGATTCCAAATTTGAAATGGAATGACAGTAAATATAATTAAATTAATGGGAAATTCTCCACACACTGACATAAATTAGATCATTTGTATAGCTAATATTTGTGAACCAAATTGGTTTGAATAGCATTACATATTTTCGTTATTTACCTCAAAGTATAGGCACAACATCAACTTATATTATGTAGACTAAGGCACTTCAGTGAGATAATGTGACAAATAGCTATCAATATCACTTATACTCACCTGGCCTAGTGGCACTGATATACAAAACAACTATTTCATTCATCATTGCATGGAAAATGTAGCCTATAGGCTTAGCCTATTTATTGACACCTGACTCATCTAACGCCTATACGTATGAATTGTAAGCTTAATTGAAAAGGCTCCCTGGGAAAATTCAAATTGATTAGTCCTGCACATTCAATACATTTAAGAATAGCTTAAATTAAATTGGTTTGAATTGTTTTTCCTGTcattcaaatgtaaatgtaaattattatttttcttgACCATTCAAATTCAAACTCAAAATGCTGTATTGGATTTGAGTTTATCTAAGCATTCTAAATTGACTCCAACCCTATGACTGATCAAATGAATGGGGAAAAGAAATCAATAATTGCACAATTTCTATATTATGTTTTTTTTGtcattaaaatgtatttgtttttttttttataatcctTTTGTATTCTTCTCATATTCTTTTAGCTTGACGAATGGATCCCTACTGTCACGCACAACGCTGTACCAATAGTCTTGGCCGCGCGAGCCTGCATTACAATTATGGATTTTATAAATCTGTCTAGGTTGCACAAAATGTCCTTGAGCGGTTTCCGATAACTGTATATTATCACTGATTTGCACACATTGTCTTGTGAAAATAAATCGTGTCATTACAGAA

Function

NR:

description
PREDICTED: POU domain, class 3, transcription factor 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09365 POU3F, OTF; POU domain transcription factor, class 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600628.2 True 3800 mRNA 0.44 1 22181947 22185746

Neighbor

gene id symbol gene type direction distance location
mrps18a LOC106607900 coding upstream 82354 22089991 ~ 22099593 (+)
LOC110522310 LOC106607894 coding upstream 434842 21701928 ~ 21747105 (+)
LOC110522308 LOC106607893 coding upstream 480330 21683716 ~ 21701617 (+)
LOC110522307 LOC106607891 coding upstream 499750 21649885 ~ 21682197 (+)
LOC110522300 LOC106607890 coding upstream 534108 21579744 ~ 21647839 (+)
LOC110522322 LOC106607944 coding downstream 33674 22219420 ~ 22262486 (+)
LOC110522327 LOC106607943 coding downstream 121212 22306958 ~ 22312299 (+)
LOC110522328 elovl4 coding downstream 234852 22420598 ~ 22432975 (+)
LOC118964449 NA coding downstream 261143 22446889 ~ 22447725 (+)
LOC110522329 LOC106607941 coding downstream 264120 22449866 ~ 22455767 (+)
G332272 NA non-coding upstream 37300 22144442 ~ 22144647 (+)
G332270 NA non-coding upstream 42491 22139218 ~ 22139456 (+)
G332235 NA non-coding upstream 119774 22061955 ~ 22062173 (+)
G332155 NA non-coding upstream 176901 22002310 ~ 22005046 (+)
G332107 NA non-coding upstream 211574 21969890 ~ 21970373 (+)
G332339 NA non-coding downstream 117537 22303283 ~ 22320447 (+)
G332393 NA non-coding downstream 213078 22398824 ~ 22399335 (+)
G332396 NA non-coding downstream 217074 22402820 ~ 22403030 (+)
G332408 NA non-coding downstream 243565 22429311 ~ 22434922 (+)
G332421 NA non-coding downstream 250298 22436044 ~ 22436307 (+)
G330771 NA other upstream 1360790 20820668 ~ 20821157 (+)
G329626 NA other upstream 1928036 20252767 ~ 20253911 (+)
G329556 NA other upstream 2081891 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 2911422 19269334 ~ 19308960 (+)
G332458 LOC106584613 other downstream 312754 22498500 ~ 22498996 (+)
G332507 NA other downstream 407184 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 770133 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 1560083 23745535 ~ 23748393 (+)
G334116 NA other downstream 1648075 23833821 ~ 23837875 (+)

Expression


Co-expression Network