XLOC_022441 (ctnnbip1)


Basic Information

Item Value
gene id XLOC_022441
gene name ctnnbip1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29711569 ~ 29751730 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044269
GCCGACTGTCGGGATGTGACCCCGGAACAGGACGCCTCCTTACACACAACACAGCTCTCAAATACAACAAAAACGACAGAATCCTGGACCAGGAGAGCGGTGCGTCAGGAGCAGGGGGGATGAACCGAGAGGAAGCCCCTGGCAAGTCTCCTGAGGAGATGTACATCCAGCAGAAGGTGCGGGTGCTGCTCATGCTCAAGAAGATGGGATCAAATCTGACACCAAACGAGGAGGCATTTCTACGGAATTATGCAGGCGTGGTGCACAGTCAGATGAGTCAGCTGCCACAGCACCCTATTGACCAGGGAGCTGAGGACGTGGTGATGGCCTTCTCAAGATCAGAGACGGAGGACAGGAGACAGTGACCTCTCGCCAGGCCGAGTCACTACAGCTCAACGCAACACAACACTGTTGACTGATGGAGAGGGCGGAGCCTGAGACAGGAGAGGGGCGGAGCTCTGCTACACGCCAGCTGCTCCACTTCCCTTCTCTTCCCCATTCCCCTCTTCATCCTCACACTAACTGTTACACTATCTGGCCCAGCGGCCGCACTACCTGGTGACGTACAGCAAACCAATCAGAAAGAGGCCTGGAGGGTAATTATTTGAATTAGGTGTTTTAAGTTTCAAATTTTCCTCGTTCATCTTGTGGCGTTTTATATTTGTTCCCAATGAGAGACTTAATGGACCAAGAGCTTCATTTGTCTGGTCAAACTACGAAAGAATATAAATCGCCTTATTGGTTGTGTTATAATTACAAAccgttttcttttttatgtatgtaGCTTCTTGTTTTTATCGTCCACAGGATCCTGCAGGTagtcttttcttttgtttgttatgatTTTCAGGGTTTTCTTTTTGTTGTAGTAGTCACTTGCTTTGTAATTTCATCAAAATGTTGTCGTGGAGGATATCGACGTTTTCCAAGAAGATAAGGCCcttacacaagcacacacactcagAATGACGTATACCAATATTtcatgatctctctctctctctttttttttggttgtttggaTTAATGTGAAATTTCATGGCATCCTTTTGTACAGAACATGAGATGAAAAACAAGTAGAAAAGTGAACGAGTTGTGCCAACtgtgtttttatgtaaaatatttctaaaggtaTCTAATGAATGTCTTAggtccttatttatttttttcaacgtCTTACAATGTAGACCAACACAACCCCCTTTTGAACTTCTGATTCGTAACAGCATGTTTTAATACAGACGTCTTTCGACATTTTTGCAAGATGTGCCATACTCCGATACGAGTGTTTGTCACTGTATATCTGATTCAGTGGTGCTAGCCAAACTCATTTTTAGCTATTCTAACTAAAGTTAAATATGAATATAACCCTTGGATTCTAAATGTCCTGCGATTAACTTAATCATCGAAAACCAAACGTTTTTATTTTAACTATCAACAGTTGAATTTGTGTTTTGGCCTCTGACCTTTTTAGTATCACGATTTCATGTTCAGTATTTAATGCGTATTCATGTTTTGTTGACTTGCGTAACATAATTATTGTATCTTAGTGTTTTGAAATGACGCATGCCTGCATTGTGGTCTACGGTATATGTTCAAGTTATGGTCACAAGAGCCTTGCTGCATTAAACGTCAGTCTACACTTTTAAATCTGTCCTTTTATGAAAACGGCTTTTATAGTTCTGGCTAATATCAGCAATAAGTATTTGACTGAATGGCGTCAGCCGTCAAGGTTTCTTGTCCATGTGACCGTCGGATTATCTCACCACTTACAGGAACGTTAACTGTAAATCTTTTTGTCTATGCATTGTTTTTATTTCGCATACAATCGTGTCTTACATGCACTCATTTCAAGTTGAGTTTGTGGCCTTTCAGCTTCGCATTCATACGAATGTCGCTCTTGTTTAATTCATCGACTTCACTGCATGTCGTCCCTACTCGCTTGAGCTGTTAAACTATTTAATGtgaattgcttttttttattgttttaaaattcaattgaatagTTGTTTTATGACGTACAGCCGTCAACGTCGTCCCTTGACTTAAATGCGTCCAAAATCTATACCAACTGAACCATTAAAGGAGTTGAAAACTG

Function

symbol description
ctnnbip1 Predicted to enable beta-catenin binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and optic tectum. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).

GO:

id name namespace
GO:0030178 negative regulation of Wnt signaling pathway biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0030877 beta-catenin destruction complex cellular_component
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
ko04310 Wnt signaling pathway

ZFIN:

id description
ZDB-GENE-000906-3 Predicted to enable beta-catenin binding activity. Predicted to be involved in negative regulation of Wnt signaling pathway. Predicted to be part of beta-catenin destruction complex. Predicted to be active in cytosol and nucleus. Is expressed in central nervous system and optic tectum. Orthologous to human CTNNBIP1 (catenin beta interacting protein 1).

Ensembl:

ensembl_id ENSDARG00000038954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044269 True 2098 mRNA 0.41 4 29711569 29751730

Neighbor

gene id symbol gene type direction distance location
XLOC_022440 NA coding downstream 5210 29674995 ~ 29706359 (-)
XLOC_022439 clstn1 coding downstream 43283 29580584 ~ 29668286 (-)
XLOC_022438 nmnat1-rbp7a coding downstream 141727 29554591 ~ 29569842 (-)
XLOC_022437 ube4b coding downstream 157878 29507315 ~ 29553691 (-)
XLOC_022436 kif1b coding downstream 205924 29396182 ~ 29505645 (-)
XLOC_022442 pik3cd coding upstream 4873 29756603 ~ 29812667 (-)
XLOC_022443 NA coding upstream 69471 29821201 ~ 29822565 (-)
XLOC_022444 zgc:194189 coding upstream 71556 29823286 ~ 29824146 (-)
XLOC_022445 tmem201 coding upstream 75404 29827134 ~ 29858087 (-)
XLOC_022446 FP101914.1 coding upstream 89481 29841211 ~ 29844314 (-)
XLOC_022433 NA non-coding downstream 353355 29333853 ~ 29358214 (-)
XLOC_022432 CR677617.1 non-coding downstream 453853 29185852 ~ 29257716 (-)
XLOC_022427 NA non-coding downstream 1257866 28433175 ~ 28453703 (-)
XLOC_022417 NA non-coding downstream 1915646 27788369 ~ 27795923 (-)
XLOC_022448 CU695073.1 non-coding upstream 148921 29900651 ~ 29901235 (-)
XLOC_022449 NA non-coding upstream 257533 30009263 ~ 30010819 (-)
XLOC_022451 NA non-coding upstream 302704 30054434 ~ 30059176 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G20507 NA non-coding CI01000001 null 11890305 ~ 11892156 (-)
bowfin (Amia calva) G122126 ctnnbip1 non-coding CM030136.1 CM030136.1 9862956 ~ 9898880 (+)