LOC110522329 (LOC106607941)


Basic Information

Item Value
gene id LOC110522329
gene name LOC106607941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 22449866 ~ 22455767 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600651.2
atcattgtaaataagaaattgttcttaactgacttgcctagttaaatatgtatatattttaagaCAGTAAGTAAAGGCTACAATGGGTCCTTTACAATGGGCCTGGAGAAAGATattcaaatgtttgttttctgGTTTGACGTTAAAATCACCCGTCATGAATACTGTGTGGCTAGTCGTGCCCCTGCAGTGCCTGGTGGTACCTTGTGTCAGCGTCTCTCCAGCCCACTAGCGCTGGGCTGAAACTGCACTGTCTCTTGCGTTTATCTAAAGGATAATAGGCCATATCAATACTTATATTAAGGTTTTATTATTtccataaataataataaaatcatACTTTGAGATGGGCGAGTGGAAAAGTCAGGACTGATGGATGACACGATGAACTCTGCCGCAAGCGGCGCTGCGGATTTTCCAGTGGCAGCATCAGACAATAGCACAGCGAGGCTGCATCGGGCTCCCTCGCCGACCAAAAGCCAGGAATGCGCCCCAAAACCGGCCCAGAAATCCTCCAGTAGATCCAAAAATATAGTTTCCAAAGGAGGATCGAGGAATAAGGTGGGAAACGAGGGGCTTAGGACCGCTGTcgtgagggagaaggagatcgAGAAATGCGACGTGGAAGCTTTTCACTCGGATGGTGCTGAAACCGATGCTGTCAATTGCAATGCAAAGAAGGCGGATGCTAGCAGAGAGGAAGGTACGGAGGAGATATTTCACCAGCCGATAGATTCTCAAACCCGTCGTTCCTCGTTACGTTTATCCTGCCTCAAAGGCGAGTCTTCCCAACATATTGGGTCATACCGGCCAGACGGCTCCAGCACCGCGGGTTCGGTGAAAGGGAAAGCGAAGAAGCGGGGAGGGGAGGCAGTGACAGCATCAGCAGGCTGCCGCAGGAATAGAAGCGGGGAATACGTGGGCTGCGTGCCGGGCCTTGGTCTGTGGAGCGGTGGTTGCTTGCAGACTGAACTCATCCACTTCCACCTACATAAGAAACTGAAGAGAAGCGGCAGTAAGATGCACACCAAGGCAGAAAGGGCTCCGGGCGCGGAGGCCTCGGCCGAGACGGAACCGGCTACAGAGGCCATAGATGCGGAGCCCGTGACACAGCAAGACGAGGGCCCGGAGGACGAGCTGGAAAGACTGGTGGATGAGAATGAAGATCTCAAGACGGAGATCGAGGAGATGAGGACGGAGATGGACGAGATGCGTGACACTTTCTACGAGGAGGACACGTGCCAGCTGCAGGAAATGAGGCGTGAACTGGAGCGAGCCAATAAGAACTGCCGGATCCTCCAGTACCGGCTGAGGAAGGCTGAGAGGAAGAAGCTGCGCTATGCCCAGACGGGAGAGATCGACGAGGAACTACTGAGGAGCCTGGAGCAggacctgaagGTAGCGAAGGATGTGTCTGTGAGGCTCCACCATGAGCTGGAGAATGTGGAGGAGAAACGTACAAAGACAGAGGACGAGAATGAGAAACTGAGGCAGAAACTGATTGAGGTGGAGGTGACCAAACAGGCCCTTCAGAATGAGCTGGACAAAGTCAAGGAGTcacagaagagaagaggaagcaAGGAGGTTCAACGGTCTGACAAGAAGTCTGCCCAGACCCCAACAGAGGACCACAATGAGGACCTCAAGTGCCAGCTGGCTTTCATCAAGGAGGAGGCCGTGTTGATGAGGAAGAAGACAGCTAAGATCGACAAGGAAAAGGACCGGCTGGAGGCGGAGCTACAGAAGTACCGCTCCTTCTACGGGGATCTAGACAGCCCCCACCCCAAGGGTGAGGCCGGGGGACCCCCCAGCACCCGTGAGTCCGAGCTGAAGCTGCGTCTGcgtctggtggaggaggaggctaaCATCCTAGGGAGAAAGATTGTGGAGCTggagGTGGAGAACCGGGGACTGAGGGCCGAGCTGGACGACctcaggggagaaggggagggagaaggggggtcCGGTGGCGGGGCTGTAGGCAGGGTAGGGGTGGGCCGGGGCCATGGGGAGGCCATGACAGAGCTGAGGCAGCAGCTGCAGCTGGTGGAGGACGAGGcagagttactgaggaggaaCCTGGCAGACGCTGAGGATCACAACAAGAGGGTGATGGGAGAACTCAACAAGCTCAGGTTTAAGGCTGGGACCCACGAGGGAGGAGCGAGGCATGGAGGAGGggtggcaggaggaggaggactaaGCACAGAGAAGGCAGATGCACTGCAGGAAGAACTGAAGACCGCCCGGCTACAGATTAATGATCTCAGTGGGAAGgtGATGCAGCTGCAGTATGAGAACCGTGTTCTGCTCTCCAACATGCAGCGCTACGACCTGGCCTCCCACCTGGCCCTGAGGGGGTGCACAAGCCCCCGGGACAGCGATGCAGACAGTGACGCGGGTGGGACCGGCCCAACCGTGCAGCGCGAGAGTGATgatgactcctcctcctcccgcaTCCTGCCCCCGCACCGCAAACGCGAGGGCCCAGTGGGCGGGGAAAGTGACTCAGATGAGGTGCGGAACCAAACCCGCTGCCTCACACCCACCCGAGGTCTCTACACACCGCCCCCAGAGGTCGCCGCCCGCTTCCTGCCCCGCAGCCCACGGGATCGCCAGCAGATGATCGACATCCGGGTGGAGGCGGAGCGTCTTGGCAGGACCATCGACCGGTTAATTGCCGACACAGCAACCATCATCGCAGAAGCGCGGGTGTACGTTTCCAATGGTGACCTGTACGGGCGAGGCAgcgggggtgaggaggaggatgaggggggTAGGATCAGGGAGCATGAGCTGCTGTACAGGATCAATGCCCAGATGAAGGCCTTCAGGAAGGAGCTACAGGGCTTCATAGACAGACTGGAGGTGCCCAAAcctgaggacagggaggaggaacCACTTtcgATGTTTCAGCCCATAATTTTACTCATCCTCATACTAGTCttattctcctccctctcctatgCCACCATCTTTAAACTTGTCTTTCTGTTTACCCTTTTCTTCGTCCTGTGATCCCGCCTCAATAGCATAGCCACatcctttgtttgtttgtttctgttgATTTTTACATTGGTTGTCAAGGTCAATGCACAGGAGCCTCCCTATTCAAGCACAGGCCACAGTCACATAACTGGATTTACAGTATGCTTATGTTCAACACTGGAGAGTACATTACCCACTACCCACCACTTCCTTCATCACCCCCAAGTAAAGTCTTTTTCAGATTtagc

Function

NR:

description
protein SOGA3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600651.2 True 3236 mRNA 0.55 10 22449866 22455767

Neighbor

gene id symbol gene type direction distance location
LOC118964449 NA coding upstream 2200 22446889 ~ 22447725 (+)
LOC110522328 elovl4 coding upstream 16891 22420598 ~ 22432975 (+)
LOC110522327 LOC106607943 coding upstream 137567 22306958 ~ 22312299 (+)
LOC110522322 LOC106607944 coding upstream 187380 22219420 ~ 22262486 (+)
pou3f2a LOC106571484 coding upstream 264120 22181947 ~ 22185746 (+)
LOC118964450 NA coding downstream 117 22455884 ~ 22462023 (+)
LOC110522334 NA coding downstream 67280 22523047 ~ 22524580 (+)
trnae-cuc-3 NA coding downstream 126191 22581958 ~ 22582029 (+)
gata4 gata4 coding downstream 147391 22603158 ~ 22617811 (+)
fdft1 fdft1 coding downstream 182535 22638302 ~ 22651343 (+)
G332431 NA non-coding upstream 743 22448764 ~ 22449123 (+)
G332426 NA non-coding upstream 7366 22442276 ~ 22442500 (+)
G332421 NA non-coding upstream 13559 22436044 ~ 22436307 (+)
G332408 NA non-coding upstream 14944 22429311 ~ 22434922 (+)
G332433 NA non-coding downstream 9368 22465135 ~ 22465370 (+)
G332446 NA non-coding downstream 24178 22479945 ~ 22480516 (+)
G332447 NA non-coding downstream 24960 22480727 ~ 22480976 (+)
G332453 NA non-coding downstream 35633 22491400 ~ 22492026 (+)
G332460 NA non-coding downstream 54753 22510520 ~ 22510782 (+)
LOC110522308 LOC106607893 other upstream 748252 21683716 ~ 21701617 (+)
G330771 NA other upstream 1628709 20820668 ~ 20821157 (+)
G329626 NA other upstream 2195955 20252767 ~ 20253911 (+)
G329556 NA other upstream 2349810 20097356 ~ 20100056 (+)
LOC110522251 LOC106607828 other upstream 3179341 19269334 ~ 19308960 (+)
G332458 LOC106584613 other downstream 42733 22498500 ~ 22498996 (+)
G332507 NA other downstream 137163 22592930 ~ 22593362 (+)
G333079 smyd2 other downstream 500112 22955879 ~ 22958196 (+)
ccdc167 ccdc167 other downstream 1290062 23745535 ~ 23748393 (+)
G334116 NA other downstream 1378054 23833821 ~ 23837875 (+)

Expression


Co-expression Network