LOC118964451


Basic Information

Item Value
gene id LOC118964451
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23107820 ~ 23113334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051498.1
CTGAAAGTGAATATGCAGTCTTCCCCCGGGAGACGTTGAATATTATAATTGCTCGGGGAAGGAAGAGCAAGAGTAAAGTGAGTGATAAGCGTGCGCGTAGAACAGAAAAAAAGACATAAAATAGCTATTTTCCGCcgctctcctctatcctctcctctcgaGACTGAAAGACTGTGGCGGTGATGTCGTAGCagctggtgtgagtgtgtgtctccgAGGCGCACGCGATGCAGAGCTTTGATGCTCGAGCTCTCCTCCACCAACAAGATTCACTTTAAGACACAGCTGAAGGAAACAGGAAGACGGCGCGTCATAAGCTTGGTGATGTAACGGTTCGTACCTACCAATAAGAACTGTCCATCGGGTCCGGGAGGAGTACAACGCACTAAACTTGACCGAGGAATGGGACTCCGACAGGCAAAAAAAAACCTCTTACTTATCACTTTCTTTACAAATCAAAAGGTCTCGGGGTCCCTGCATAAAAAGGTTCTCGcttggagaggagaaaagagaagaggagagcaggagagagacggCAGCGAGCGCTGGGAATGAGTAGGCGTCTCACACTCTTACCAGGCCCAACAGGATGCACAACCTTACGACTTGATGTATTCAAGTGTAATCAGAGACACGCTCACTAGAGAACCAGGGCCCTGCAGGTGacaacgatgatgatgatgatggtggctCTGTAAGGGAAATAGAAAAACATTCATCTGGATGTTATGTGTTGTACTGAAGAAAAGTCAGCGAGAGGACTTAAAGAGGAAAACTGTACTTGGAAATTAGGATGATTAGGTTACTATCTATGTCAATTGagtcccacagtggaggtgtcatgatacccataaaacctagcggtcaaacagggaaataaatggttccaatcatttttccactATTTATTTTCCCATaaggatttaaaaaaacaacacttaAAATAGGTTTACCATGAtatgacattttgataaccatgtaaatctctcatggACATGGtcacttttatcaatatattagtctctatttactctcagattcaaaaatgctaattagcatcaaagtagacatcatgcaagactacaaatccctgcaagctcccaCACGTCaactctagctgacacctttgttAGCAAGCATTGTCTCCATAAAGAaattgcacaagacagttcacagaattgtcaatttaaagaaatgtagacAATTTAtgaattactacatttagctaacattagatagttaatctaAAGATTGTTACCTTTGCCTCAATTCGGCAGTCTCTTCCAGATCatcatttgtagttctttatgatagccacattagctgctatttagcatttcatttttggggggtaaatacaAGCAAATATATtgctaaaagtcaccttgtcctagagacaATTACACGGTTCTCTAAACGTCTCACCAAGGTAAGCCTActcgaaacacagcccttatatTAAGTGTCCCCTATAGGAAAAaaataatggtggaaaaacgattggaaacatttccttgtttgaccactaggttttctGGGTATTATGTCTcctactgtggtactctataggcGGTGTTTACACAGTCAcctcaattctgatcttttgccaatTGGGATTTTGGACCTATCAGATCTTTTGCCAATATTTGGGAAACCGATCAGAATTGGTCTTTCTGTGTTAACACAGCCTATACCTCTGTATTTATAGGATGAATCTGCACAATGACTAGTCAAATTGATCATCCACGTTATGAATAAATGGCACAAGGACAGTGA
>TU377143
GAAGAGAAAAGCGAGCTCCTTTTTACTGCTGAAAGTGAATATGCAGTCTTCCCCCGGGAGACGTTGAATATTATAATTGCTCGGGGAAGGAAGAGCAAGAGTAAAGTGAGTGATAAGCGTGCGCGTAGAACAGAAAAAAAGACATAAAATAGCTATTTTCCGCcgctctcctctatcctctcctctcgaGACTGAAAGACTGTGGCGGTGATGTCGTAGCagctggtgtgagtgtgtgtctccgAGGCGCACGCGATGCAGAGCTTTGATGCTCGAGCTCTCCTCCACCAACAAGATTCACTTTAAGACACAGCTGAAGGAAACAGGAAGACGGCGCGTCATAAGCTTGGTGATGTAACGGTTCGTACCTACCAATAAGAACTGTCCATCGGGTCCGGGAGGAGTACAACGCACTAAACTTGACCGAGGAATGGGACTCCGACAGGCAAAAAAAAACCTCTTACTTATCACTTTCTTTACAAATCAAAAGGTCTCGGGGTCCCTGCATAAAAAGGTTCTCGcttggagaggagaaaagagaagaggagagcaggagagagacggCAGCGAGCGCTGGGAATGAGTAGGCGTCTCACACTCTTACCAGGCCCAACAGGATGCACAACCTTACGACTTGATGTATTCAAGTGTAATCAGAGACACGCTCACTAGAGAACCAGGGCCCTGCAGGTGacaacgatgatgatgatgatggtggctCTGTAAGGGAAATAGAAAAACATTCATCTGGATGTTATGTGTTGTACTGAAGAAAAGTCAGCGAGAGGACTTAAAGAGGAAAACTGTACTTGGAAATTAGGATGATTAGGTTACTATCTATGTCAATTGagtcccacagtggaggtgtcatgatacccataaaacctagcggtcaaacagggaaataaatggttccaatcatttttccactATTTATTTTCCCATaaggatttaaaaaaacaacacttaAAATAGGTTTACCATGAtatgacattttgataaccatgtaaatctctcatggACATGGtcacttttatcaatatattagtctctatttactctcagattcaaaaatgctaattagcatcaaagtagacatcatgcaagactacaaatccctgcaagctcccaCACGTCaactctagctgacacctttgttAGCAAGCATTGTCTCCATAAAGAaattgcacaagacagttcacagaattgtcaatttaaagaaatgtagacAATTTAtgaattactacatttagctaacattagatagttaatctaAAGATTGTTACCTTTGCCTCAATTCGGCAGTCTCTTCCAGATCatcatttgtagttctttatgatagccacattagctgctatttagcatttcatttttggggggtaaatacaAGCAAATATATtgctaaaagtcaccttgtcctagagacaATTACACGGTTCTCTAAACGTCTCACCAAGGTAAGCCTActcgaaacacagcccttatatTAAGTGTCCCCTATAGGAAAAaaataatggtggaaaaacgattggaaacatttccttgtttgaccactaggttttctGGGTATTATGTCTcctactgtggtactctataggcGGTGTTTACACAGTCAcctcaattctgatcttttgccaatTGGGATTTTGGACCTATCAGATCTTTTGCCAATATTTGGGAAACCGATCAGAATTGGTCTTTCTGTGTTAACACAGCCTATACCTCTGTATTTATAGGATGAATCTGCACAATGACTAGTCAAATTGATCATCCACGTTATGAATAAATGGCACAAGGACAGTGAGACTGTGGTTCCTGGTGATGCCCCTCTCCTTTTCTTcctgatgactgactgactgcctgactggcaGGGTTAGACTGCATCGCTGGATATTGTGAACAAGATCCAATTAATGCAGAAAAATTTAATCTGATGTCTCTCTAACTCTTCTCTGAGAGGAATGAGTCATATTTTGtattaaaaaacacacacacacacacacaacattttgACATATACCTGTTGATAAGAGTAAAGAAGTAGTGGGGAATGATGTAgcctaat
>TU377149
GAAGAGAAAAGCGAGCTCCTTTTTACTGCTGAAAGTGAATATGCAGTCTTCCCCCGGGAGACGTTGAATATTATAATTGCTCGGGGAAGGAAGAGCAAGAGTAAAGTGAGTGATAAGCGTGCGCGTAGAACAGAAAAAAAGACATAAAATAGCTATTTTCCGCcgctctcctctatcctctcctctcgaGACTGAAAGACTGTGGCGGTGATGTCGTAGCagctggtgtgagtgtgtgtctccgAGGCGCACGCGATGCAGAGCTTTGATGCTCGAGCTCTCCTCCACCAACAAGATTCACTTTAAGACACAGCTGAAGGAAACAGGAAGACGGCGCGTCATAAGCTTGGTGATGTAACGAAAGGTCTCGGGGTCCCTGCATAAAAAGGTTCTCGcttggagaggagaaaagagaagaggagagcaggagagagacggCAGCGAGCGCTGGGAATGAGTAGGCGTCTCACACTCTTACCAGGCCCAACAGGATGCACAACCTTACGACTTGATGTATTCAAGTGTAATCAGAGACACGCTCACTAGAGAACCAGGGCCCTGCAGGTGacaacgatgatgatgatgatggtggctCTGTAAGGGAAATAGAAAAACATTCATCTGGATGTTATGTGTTGTACTGAAGAAAAGTCAGCGAGAGGACTTAAAGAGGAAAACTGTACTTGGAAATTAGGATGATTAGGTTACTATCTATGTCAATTGagtcccacagtggaggtgtcatgatacccataaaacctagcggtcaaacagggaaataaatggttccaatcatttttccactATTTATTTTCCCATaaggatttaaaaaaacaacacttaAAATAGGTTTACCATGAtatgacattttgataaccatgtaaatctctcatggACATGGtcacttttatcaatatattagtctctatttactctcagattcaaaaatgctaattagcatcaaagtagacatcatgcaagactacaaatccctgcaagctcccaCACGTCaactctagctgacacctttgttAGCAAGCATTGTCTCCATAAAGAaattgcacaagacagttcacagaattgtcaatttaaagaaatgtagacAATTTAtgaattactacatttagctaacattagatagttaatctaAAGATTGTTACCTTTGCCTCAATTCGGCAGTCTCTTCCAGATCatcatttgtagttctttatgatagccacattagctgctatttagcatttcatttttggggggtaaatacaAGCAAATATATtgctaaaagtcaccttgtcctagagacaATTACACGGTTCTCTAAACGTCTCACCAAGGTAAGCCTActcgaaacacagcccttatatTAAGTGTCCCCTATAGGAAAAaaataatggtggaaaaacgattggaaacatttccttgtttgaccactaggttttctGGGTATTATGTCTcctactgtggtactctataggcGGTGTTTACACAGTCAcctcaattctgatcttttgccaatTGGGATTTTGGACCTATCAGATCTTTTGCCAATATTTGGGAAACCGATCAGAATTGGTCTTTCTGTGTTAACACAGCCTATACCTCTGTATTTATAGGATGAATCTGCACAATGACTAGTCAAATTGATCATCCACGTTATGAATAAATGGCACAAGGACAGTGAGACTGTGGTTCCTGGTGATGCCCCTCTCCTTTTCTTcctgatgactgactgactgcctgactggcaGGGTTAGACTGCATCGCTGGATATTGTGAACAAGATCCAATTAATGCAGAAAAATTTAATCTGATGTCTCTCTAACTCTTCTCTGAGAGGAATGAGTCATATTTTGtattaaaaaacacacacacacacacacaacattttgACATATACCTGTTGATAAGAGTAAAGAAGTAGTGGGGAATGATGTAgcctaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051498.1 False 1776 mRNA 0.41 2 23107848 23113073
TU377143 False 2065 lncRNA 0.41 2 23107820 23113334
TU377149 True 1939 lncRNA 0.41 2 23107820 23113334

Neighbor

gene id symbol gene type direction distance location
LOC110522349 ptpn14 coding upstream 152420 22853423 ~ 22955428 (+)
LOC110522347 LOC106607950 coding upstream 258414 22814283 ~ 22849434 (+)
LOC110522345 LOC106607930 coding upstream 401339 22696828 ~ 22706509 (+)
LOC110522344 LOC106607931 coding upstream 414505 22684894 ~ 22693343 (+)
LOC110522342 LOC106607951 coding upstream 425535 22674306 ~ 22682313 (+)
snx9b snx9 coding downstream 211365 23324438 ~ 23357018 (+)
LOC100136772 LOC100136772 coding downstream 269119 23382192 ~ 23388570 (+)
LOC118964414 NA coding downstream 375949 23489022 ~ 23491763 (+)
parp1 parp1 coding downstream 381698 23494771 ~ 23506567 (+)
lin9 LOC106608031 coding downstream 395999 23509072 ~ 23525525 (+)
G333189 NA non-coding upstream 9794 23097033 ~ 23098054 (+)
G333174 NA non-coding upstream 37436 23064179 ~ 23070412 (+)
G333134 NA non-coding upstream 160955 22946650 ~ 22946893 (+)
G333133 NA non-coding upstream 161439 22946145 ~ 22946409 (+)
G333194 NA non-coding downstream 1083 23114156 ~ 23114411 (+)
G333195 NA non-coding downstream 1443 23114516 ~ 23114750 (+)
G333196 NA non-coding downstream 2829 23115902 ~ 23116124 (+)
G333205 NA non-coding downstream 13115 23126188 ~ 23126424 (+)
G333206 NA non-coding downstream 14625 23127698 ~ 23127919 (+)
G333079 smyd2 other upstream 149652 22955879 ~ 22958196 (+)
G332507 NA other upstream 514486 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 608852 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1406234 21683716 ~ 21701617 (+)
G330771 NA other upstream 2286691 20820668 ~ 20821157 (+)
ccdc167 ccdc167 other downstream 632756 23745535 ~ 23748393 (+)
G334116 NA other downstream 720748 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 950758 24063831 ~ 24072963 (+)
G334475 NA other downstream 1304509 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 1307041 24420114 ~ 24422731 (+)

Expression


Co-expression Network