LOC100136772 (LOC100136772)


Basic Information

Item Value
gene id LOC100136772
gene name LOC100136772
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23382192 ~ 23388570 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021598374.2
AGGACAAATTCCTACAAAGAAATTGATCAGACAAccaagggaagagaaggagagagaggagtgattcCATTCTGCGCTGTGAGATCctgcagagaaagacaggagaccTGTGGAAGAACAAAACGAGAAAGTGAAAGAAGTGTTAGGTTGAATATGGTGTGTGCGCCCTGGCTGTtagcggtggtggtggtgtgtgtgtgcaacccCGGGGTGGGAGGGCAGTGCTGGGATAGCTCCCACTGCAAAGACCTCCCTTCAGAGGACAAGATACTGGAGTGCATCCACCTGTTCAGGTCTGGGCTCCAGGACGAATCCCCAGAGCCCAGATCGGCTGCCCAGCAGTCCACTGAGGAGAGCCTCTCCCTGGGCATCCTGTTGGCAGCCCTGACCTCTGGAGAGAGAGCACTGGATGCTGACCCTGAGCCCCACAGCGACAAGAGACACTCCTACTCCATGGAGCACTTCCGCTGGGGCAAACCCATTGGGCACAAACGCCGCCCCATCAAAGTCTATGCCTCCAGTCTGGAAGGGGGGGACTCCTCCGAGGGCACCTTTCCCCTGCAGGCACGCAGGCAGCTGAGCAGCTGGGAGGACGAGATGGTGGGAGCTCTGGGGAACCAGGGGGCCAAGGCTCAGACCAAGGTAGTCCCCAGAACCCTCACTGTGACGGGGCTGCAAGATAAGAAGGATGGGTCCTATCGGATGGGTCACTTCCGCTGGGGCAGCCCAACCGCTATCAAGCGCTACGGTGGCTTCATGAAGCCATATACCCAGCAATCCCACAAGCCCCTGATCACGCTGCTCAAGCATGTCACCCTTAAGAACGAGCAGTAGAGGAGGGCAGCAGGAACAAGGgatagaagggagggaggggagggatagGATGAGTGTAGTAAAGAGGAAAAGATGAAAGATGAACTGAATGTTTTGAAGACCAGTGGCAACTGTTGAAAACTAAGGGTCATATTTAATCTGTAGCCAAGTTTCCAGAGTAACACAAAAAACGAATTATAGCTCCGCAATATAAAACAATGAAACAACAAATAAGTCCCCAAAAAATGTCTTATATACATTTCAGACAAGATATGATATGTTACCTGTAAAAAAGATAAGGCAATGTTCCCATTCAAACAGCCCCTTATTTACAACTTATTTGCAGGTATGCCCTTTTATACATATCAGTGGGTAACTGGCAAATTGGGAGGGTAGGGTGTGCCGTTAAACAATCGAAGTGTTAATTAATTTACCTGCAAATAAGCGGAGAACCATACTGTacacagacctgatacctgtattttggttagaGGGTCTGTGAAAATACAGGAATCATGACTAGGTCTTTAGGTGGGTTTTAAATTACCATGTTTTTTTTAACCCTTACCCCTTTCAGAATGACAAAAAAAGCTTGTACTGTATAAAAAGCTGGCATGGTAAAATAGTGTGATTTTTGTCTGTATATGAAAGGGATATTAGCATTGCCCTAGATAGCCCATAACGGTTTTGATTGAATAGGGCCATTGATAGCTGTAGAATACATTTATGGCCATGGCTTGAATGCTGTATGAGAAAGTATAAATTGAAGGAAGTACTTAGAAAGTCTTCGGTAACAGTGACCATACTGAATACTGTGTATAGATGACAGACTGGGGTAGGGAGTGGGGTATGAGAGAAGATCATTTCAAATGGAATACTATTTTTCCTCATTATTTTTATTGAGATAAATTGTACCATATTGTAAATGTATGTATTAAACAGATACTGCTTTGTGGCAAGCAACACAAA
>NM_001124719.1
attcCATTCTGCGCTGTGAGATCctgcagagaaagacaggagaccTGTGGAAGAACAAAACGAGAAAGTGAAAGAAGGCAACGCATTCCTGCCTTCATACAGTACCTGGTGTTAGTACAGTATGTTCGGAACATTCTTGCAAAATCAGAGTGTTAGGTTGAATATGGTGTGTGCGCCCTGGCTGTtagcggtggtggtggtgtgtgtgtgcaacccCGGGGTGGGAGGGCAGTGCTGGGATAGCTCCCACTGCAAAGACCTCCCTTCAGAGGACAAGATACTGGAGTGCATCCACCTGTTCAGGTCTGGGCTCCAGGACGAATCCCCAGAGCCCAGATCGGCTGCCCAGCAGTCCACTGAGGAGAGCCTCTCCCTGGGCATCCTGTTGGCAGCCCTGACCTCTGGAGAGAGAGCACTGGATGCTGACCCTGAGCCCCACAGCGACAAGAGACACTCCTACTCCATGGAGCACTTCCGCTGGGGCAAACCCATTGGGCACAAACGCCGCCCCATCAAAGTCTATGCCTCCAGTCTGGAAGGGGGGGACTCCTCCGAGGGCACCTTTCCCCTGCAGGCACGCAGGCAGCTGAGCAGCTGGGAGGACGAGATGGTGGGAGCTCTGGGGAACCAGGGGGCCAAGGCTCAGACCAAGGTAGTCCCCAGAACCCTCACTGTGACGGGGCTGCAAGATAAGAAGGATGGGTCCTATCGGATGGGTCACTTCCGCTGGGGCAGCCCAACCGCTATCAAGCGCTACGGTGGCTTCATGAAGCCATATACCCAGCAATCCCACAAGCCCCTGATCACGCTGCTCAAGCATGTCACCCTTAAGAACGAGCAGTAGAGGAGGGCAGCAGGAACAAGGgatagaagggagggaggggagggatagGATGAGTGTAGTAAAGAGGAAAAGATGAAAGATGAACTGAATGTTTTGAAGACCAGTGGCAACTGTTGAAAACTAAGGGTCATATTTAATCTGTAGCCAAGTTTCCAGAGTAACACAAAAAACGAATTATAGCTCCGCAATATAAAACAATGAAACAACAAATAAGTCCCCAAAAAATGTCTTATATACATTTCAGACAAGATATGATATGTTACCTGTAAAAAAGATAAGGCAATGTTCCCATTCAAACAGCCCCTTATTTACAACTTATTTGCAGGTATGCCCTTTTATACATATCAGTGGGTAACTGGCAAATTGGGAGGGTAGGGTGTGCCGTTAAACAATCGAAGTGTTAATTAATTTACCTGCAAATAAGCGGAGAACCATACTGTacacagacctgatacctgtattttggttagaGGGTCTGTGAAAATACAGGAATCATGACTAGGTCTTTAGGTGGGTTTTAAATTACCATGTTTTTTTTAACCCTTACCCCTTTCAGAATGACAAAAAAAGCTTGTACTGTATAAAAAGCTGGCATGGTAAAATAGTGTGATTTTTGTCTGTATATGAAAGGGATATTAGCATTGCCCTAGATAGCCCATAACGGTTTTGATTGAATAGGGCCATTGATAGCTGTAGAATACATTTATGGCCATGGCTTGAATGCTGTATGAGAAAGTATAAATTGAAGGAAGTACTTAGAAAGTCTTCGGTAACAGTGACCATACTGAATACTGTGTATAGATGACAGACTGGGGTAGGGAGTGGGGTATGAGAGAAGATCATTTCAAATGGAATACTATTTTTCCTCATTATTTTTATTGAGATAAATTGTACCATATTGTAAATGTATGTATTAAACAGATACTGCTTTGTGGCAAGCAA

Function

NR:

description
pro-opiomelanocortin B precursor

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021598374.2 False 1782 mRNA 0.46 3 23382192 23388570
NM_001124719.1 True 1786 mRNA 0.47 4 23382255 23388564

Neighbor

gene id symbol gene type direction distance location
snx9b snx9 coding upstream 25174 23324438 ~ 23357018 (+)
LOC118964451 NA coding upstream 269119 23107820 ~ 23113334 (+)
LOC110522349 ptpn14 coding upstream 426764 22853423 ~ 22955428 (+)
LOC110522347 LOC106607950 coding upstream 532758 22814283 ~ 22849434 (+)
LOC110522345 LOC106607930 coding upstream 675683 22696828 ~ 22706509 (+)
LOC118964414 NA coding downstream 100452 23489022 ~ 23491763 (+)
parp1 parp1 coding downstream 106201 23494771 ~ 23506567 (+)
lin9 LOC106608031 coding downstream 120502 23509072 ~ 23525525 (+)
LOC110522421 LOC106608030 coding downstream 141342 23529912 ~ 23538153 (+)
nhsl1b nhsl1 coding downstream 153879 23542449 ~ 23719666 (+)
G333252 NA non-coding upstream 144764 23235319 ~ 23237428 (+)
G333221 NA non-coding upstream 199922 23182068 ~ 23182270 (+)
G333214 NA non-coding upstream 230077 23147469 ~ 23152115 (+)
G333212 NA non-coding upstream 236015 23139304 ~ 23146177 (+)
G333348 NA non-coding downstream 12421 23400991 ~ 23404519 (+)
G333398 NA non-coding downstream 94898 23483468 ~ 23483704 (+)
G333399 NA non-coding downstream 95258 23483828 ~ 23484067 (+)
G333447 NA non-coding downstream 197648 23586218 ~ 23586493 (+)
G333452 NA non-coding downstream 207859 23596429 ~ 23596646 (+)
G333079 smyd2 other upstream 423996 22955879 ~ 22958196 (+)
G332507 NA other upstream 788830 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 883196 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1680578 21683716 ~ 21701617 (+)
G330771 NA other upstream 2561035 20820668 ~ 20821157 (+)
ccdc167 ccdc167 other downstream 357259 23745535 ~ 23748393 (+)
G334116 NA other downstream 445251 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 675261 24063831 ~ 24072963 (+)
G334475 NA other downstream 1029012 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 1031544 24420114 ~ 24422731 (+)

Expression


Co-expression Network