parp1 (parp1)


Basic Information

Item Value
gene id parp1
gene name parp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23494771 ~ 23506567 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600799.2
TCGATTGCTCTTGTCTGCGTATCTGCGCGGGTACTCTGCACGCGGGCTGCAACTACATTGTAGTGGCTACTGCCAAGCACGTTAGATTTACATTCAATCAATCTAATTTTGTgtataaactcaacaaaaatggCAGATGCACAAGAGGACAAGCTTTACAAAGCTGAATATGCCAAAAGTGGACGTGCTTCGTGCAAGAAATGCAAGGAAAACATAGCAAAGGATTCGCTGCGGATGGCTATCATGGTGCAGTCGCCCATGTTTGACGGTAAGGTGCCCCACTGGCACCACTTCTCCTGCTTCTGGCTGCGGGCGTCTGCCCAGTCTCCTGCAGACATCGCTGGATTCTCTGACCTGCGATGGGAGGACCAGGAGAAGGTCAAGAAGGCCATCGAGACTGGGGGAGCTGCAGGAGGAAAAGGTGATGTGAAGGGTGGGGCCAAAGGAGAGAAGACTCTGAATGACTTTGCAGTGGAGTATGCCAAGTCCAATCGCAGCACATGTAAAGGGTGTGAGCAGAAAATTGAAAAGGACCAGATCCGTGTATCTAAGAAGACGATTGACCCAGAGAAGCCCCAGCTGGGGTTGATAGACCGCTGGTACCATACCGCCTGCTTTGTGGGCCGCAGGGAGGAGCTGGTCTTCAAACAAGAGTACAGCGCCGCTCAGCTCAAAGGCTTTAACACACTCAGGGTGGAGGACAAGGAGGAGCTGAAGAGAAGGCTCCCCGCTGTCAAATCTAAAGGaaagagagagactgatgaggtAGATGGAGAAGGGGCAtcgaagaagaagaaggatgaggaggagaagaagaaagtgGACTTGCAGATGAAGGAGCAGAGCCAGCTGATCTGGGGCATCAAGGACAAGCTCAGGCAGTTCTGTTCCACCAACGACATGAAGGAGCTGCTCATCGCCAACGGACAGGAAGTGCCCTCTGGAGAGTCCAATGTGGTGGACAGCCTAGGAGACTGCATGGCCTTTGGCGCACTGAAGCCCTGCGAGGAATGCCAGGGCCAGCTGGTGTTCAAGAGCGACGCCTACTACTGCACTGGAGACCTCTCTGCCTGGACCAAGTGTGTGTTCAAGACCCAGCTGCCCAACCGCAAGGGCTGGGTCATCCCCAAGGAGTTCCATGAGCTTCCCTTCCTCAAGAAGTTCAAGTTTAAGAGACAGGACCGGGTGTTCCCCAAGGTGGCCCCTCCCCCAGCCTCTTCTGCATCCGCTCCTGTCCCCAGTGCCTCCAGTGATCCCAGTATACCCATCCCAGAGGGAGCCCCTGCAGATAAGCCTCTGACAGGGATGAAGTTGCTGACTGTGGGCAAGCTGAGACAGAACAAGGACGAGCTGAAGATTGCCGTGGAGGAGCTGGGCGGGAAGATCACCGGCACAGCCAATAAGGCTACTCTCTGCCTCAGCACCAAGAAGGAAGTAGAGAAGAGGAGTAAGAAgatggaggaggcagaggaggcgGGCGTGCGCGTGGTCTCAGAGGACTTCCTTACTGACATCAAGTCCTCGGGCAAGGCCCTGCAGGAGCTGGTCTCCCTGCACGCCATCTCCCCCTGGGGGGCCGAGGTCAAACTAGAGACCCAGGCTCAATCAGCAGCCTCCAGGTCTGGAGCCATGGCTGGCAAGAGCACcaagagggtgaaggaggaggaagGTGTTAGCAAGGCCAGTAAGAAGATGAAGCTGACTGTGAAAGGAGGGGCAGCAGTGGACCCAGACTCATGTCTAGAGAACAGTGCTCATGTCCTGGATCAGAATGGCAAGATCTTCAGCGCTACGCTAGGTCTGGTGGACATCGTCAGGGGTACCAACTCCTACTACAAACTGCAGCTGCTGGAGGACGATGTGCATAAACGGTACTGGGTGTTCCGCTCCTGGGGCAGAGTGGGCACCACCATCGGGGGAAATAAGCTGGATAAGTTCCATGATAAGAACTCTGCCATGGACAACTTCCTGGGTGTGTACGAAGAGAAGACAGGCAACGCCTGGGGCTCTTCCCACTTCACCAAGTATCCCAACAGGTTCTACCCTCTGGAGATCGACTACGGTCAGGATGAGGAGGCGGTGAAGAGGCTGACAGCCAGTGCTGGCACAAACTCTCTGCTGGCCAAGCCTGTCCAGGAACTCATCAGGACCATCTTTGATGTGGAGAGCATGAAGAAGGCCATGGTGGAGTTTGAGATTGACCTCCAGAAGATGCCGCTGGGGAAGCTGAGTAAGAGGCAGATTCAGAGTGCCTACGCCCTCCTCAGTGAGGTGCAGCAGGCTGTGTCGGACAGTTCCTCAGAGTCCCACATTCTGGACCTGTCCAATCGCTTCTACACCCTCATACCTCACGACTTTGGCATGAAGAAACCACCGCTGCTCAGCAACCTTGACTACATTCAGGCTAAGGTCCAGATGTTGGACAACCTGCTGGACATTGAAGTGGCCTACAGTCTGCTGAAAGGAGGGGCCGAGGATAACAAGAAGGACCCTATCGACATCAACTATGAGAAACTCAAAACCAAGATTGAGGTTGTTGACAAGACCACAGAGGAGGCAGAGATCATTCTGCAGTATGTCAAGAACACACACGCTGCTACACACAACACCTACACACTGGAAGTTGAGGAGATCTTCAAGATCGTTAGGGAGGGAGAGTACCAGAAGTACCGCCCCTTCCAGGATCTGCCCAATCGACAGCTTCTGTGGCACGGTTCTCGTGCCACCAACTACGCTGGTATCCTTTCTCAGGGTCTGCGTATCGCCCCTCCTGAAGCCCCCGTGACGGGTTACATGTTTGGCAAAGGTGTGTACTTTGCCGACATGGTGTCCAAGTCGGCCAACTACTGCCACACCTCCCAGTCCGACCCAACTGGCCTACTTCTACTGGGAGAGGTCGCCCTCGGAAACATGCATGAACTGAAGAAGGCCTCACACATCACAAAACTACCCAAGGGTAAACACAGTGTGAAAGGGTTGGGTCGAAACGCCCCAGATCCTAGTGCCACTGTCACTTTAGATGGGGTGCAAGTGCCTCTGGGAAAAGGAACCAACACCAACATCGACGACACGAGTCTGCTGTACAACGAATACATTGTGTATGATGTGGCACAGGTGAACCTGAAGTACTTGCTGAAGATCAAGTTCAACTACCAGATGTCCATGTGGTGAACGGGGTTGTAGTTGACCACCACAGGCTCTCCAGAAAATTCCAGCTGACCACCCACCGCTTCCAGCTCCCACCCCACAACAAGAGACATTTTGAACCTTCCCATCCTAATGCAGTGTTCTGTTTTCATTTTGTAGTTTAAAATCTTAGCCACTATACACATGGCTTATTGCAATAGCGGATAGCCTTAAATAGGATAATGTATTGACCTTGTTTTATGCACCTTAGTACCTGTTTGACTATACTAGGTTGGTATTGGTTATTAAGACTGTGGATCGTGAGGTCAGAGTTCAACAATCAGAATGGCTGAATTAAGGCACCTGTGGAAAGAGATTGTCATTGCAAGACAAGAAAAGTGATGATATAACCAACACTGGTCTGTTAAATGTAAGTTTGTTTTAGTTTACTTGTGTACCCATAGTCCAAGGTAGTATTTCAGGTAAATGCAAAGCTGTTTTTTAAAGTTTGAAAAAAAATATTACTCTTAACTGCAATTTTTCATCTATGGTCAGTTTCAAGGGTTTCAACGGGCATAATGAGATGTTTCCCAATGAGTCATTTCTCTTCACCCAgtccactccattccagccaaaAGGTAGTAGTTGGTAAATCGGCACACCCTGTGAACACATACAAACCATGGATGACACTTTACTAGAACTTACTAGTAATAGAACTGTTAAGATAAATACTTTGTAGACTGTTCGTAAGGAGTCAATACTAAGTTTGACCTGAATAATATGCTTTGTTTTTTTCTATATGCTTTGTCTCTCAATCTCTTTGTCAAGGTTGACCCTGTAAAAAATAGGTTTGTGCTGACAGCGTTTAGTCCATGTATTCTATAAATAAATGTTTGACTTGGAGTGGTGAGAGACTGTTGGTTTTGTTCTATCCactgtatttttttcccccaccacTCAGAATAAAGCATTTTGTAAATCTTACCTTCTTACAAA

Function

symbol description
parp1 Predicted to enable NAD+ ADP-ribosyltransferase activity and protein ADP-ribosylase activity. Predicted to be involved in double-strand break repair and protein poly-ADP-ribosylation. Predicted to act upstream of or within protein ADP-ribosylation. Predicted to be located in chromosome and nucleus. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in several diseases, including arthritis; bacterial meningitis; neurodegenerative disease (multiple); stomach carcinoma; and type 2 diabetes mellitus. Orthologous to human PARP1 (poly(ADP-ribose) polymerase 1).

NR:

description
poly [ADP-ribose] polymerase 1

GO:

id name namespace
GO:0006471 protein ADP-ribosylation biological_process
GO:0005634 nucleus cellular_component
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K24070 PARP1; poly [ADP-ribose] polymerase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600799.2 True 4125 mRNA 0.50 21 23494771 23506567

Neighbor

gene id symbol gene type direction distance location
LOC118964414 NA coding upstream 3008 23489022 ~ 23491763 (+)
LOC100136772 LOC100136772 coding upstream 106201 23382192 ~ 23388570 (+)
snx9b snx9 coding upstream 137753 23324438 ~ 23357018 (+)
LOC118964451 NA coding upstream 381698 23107820 ~ 23113334 (+)
LOC110522349 ptpn14 coding upstream 539343 22853423 ~ 22955428 (+)
lin9 LOC106608031 coding downstream 2505 23509072 ~ 23525525 (+)
LOC110522421 LOC106608030 coding downstream 23345 23529912 ~ 23538153 (+)
nhsl1b nhsl1 coding downstream 35882 23542449 ~ 23719666 (+)
trnaa-ugc-7 NA coding downstream 44190 23550757 ~ 23550830 (+)
ccdc167 ccdc167 coding downstream 238968 23745535 ~ 23748393 (+)
G333399 NA non-coding upstream 10704 23483828 ~ 23484067 (+)
G333398 NA non-coding upstream 11067 23483468 ~ 23483704 (+)
G333348 NA non-coding upstream 90252 23400991 ~ 23404519 (+)
G333252 NA non-coding upstream 257343 23235319 ~ 23237428 (+)
G333447 NA non-coding downstream 79651 23586218 ~ 23586493 (+)
G333452 NA non-coding downstream 89862 23596429 ~ 23596646 (+)
G333464 NA non-coding downstream 113529 23620096 ~ 23620517 (+)
G333466 NA non-coding downstream 120529 23627096 ~ 23627335 (+)
G333474 NA non-coding downstream 130712 23637279 ~ 23637627 (+)
G333079 smyd2 other upstream 536575 22955879 ~ 22958196 (+)
G332507 NA other upstream 901409 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 995775 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1793157 21683716 ~ 21701617 (+)
G330771 NA other upstream 2673614 20820668 ~ 20821157 (+)
G334116 NA other downstream 327254 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 557264 24063831 ~ 24072963 (+)
G334475 NA other downstream 911015 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 913547 24420114 ~ 24422731 (+)

Expression


Co-expression Network