lin9 (LOC106608031)


Basic Information

Item Value
gene id lin9
gene name LOC106608031
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23509072 ~ 23525525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600800.2
AACATAAATTCAGTCCATAAAAAATTGCCCTGCAGACACACTGTCCCAGAATGCATCTTGACAATATGGTCTTTGAAAAAAGCAGCGCGGCTAATTCAAGATGGCGGAGATGGACCAGCTAGACGAGAGCTCTTCAGCAGAGGCGCTAGTCAGTCTGAAAGAGGGCAGTCTGTCAAATACTTTGAATGAGAAACAAACAAAAGCTCACAACACGAGAGGAAGACACACCTTGGTGTCCATGGAAACGCCCACACGGAGCTCCAAGAGGAGCAGACTgttcagagaggaggaggagcagcgcCTCCCATCCAGATCCCCTAGAAGGAGCCAGAGGGTCACCTCTGTACCCCAGAAGTTTGCTAATGTGACGACCCCAGATAAGAAAGTGTCTCAGAGAATCGGGCTGAGGTTGAGAAACCTTCTCAAACTTCCTAAAGCACACAAATGGTGCATCTACGAGTGGTTCTATTCTAACATAGATGGACCTTTATTTGAAGGTGACAATGACTTCTGCCTGTGCCTGAAAGAATCCTTCCCCAACCTGAAGACCAGGAAGTTGACCCGCGTGGAGTGGGGTACAATCAGGAGACTGATGGGGAAACCCAGACGGTGTTCGTCTGCGTTCTTTGCTGAGGAGCGGACTGCGCTGAGGCAGAAGAGGCAGAAGATGCGTATGCTGCAGCAGAGGAAGTTTTTCGACGTGGCACACTGCAAAGACCTCCCCGACGAGATCCCCTTGCCGCTCGTCATAGGAACCAAAGTCACCGCTCGTCTTAGGGGAGTCCATGACGGCCTGTTCACTGGGCAGATCGATGCCGTGGATACGGGCGCTGCCACTTACCGTGTGACCTTTGACCGGAATGGGCTGGGCACACACACCGTGCCTGATTACGAAGTGCTGAGTAATGAGCCCAACGAGACCATGCCCATCTCAACCTTCGCACAGAAACTGAGACCCTCCCGCTTCCAAAACTTCATGACCCCTCCCAGAGTGACCTACGCCTCCGCCACCACACCAGTCCTCATGGACAATGATCCCCTCATCAGCCAGTCTCCATGGAAAAACAAACTCCCTGGAGCGGACGGAGACACGCTTGGAGGGTTCCCTGTCAAGTTCCTCGTCCAAGTGACGAGGCTCTCCAAGATCCTCATGATCAAGAAAGAACACGTCAAGCACTTGAAGGATATGAACGCAGAAGCTGAAAAACTGAAGTCGTGCTCGATGCCTATAGGCCTAGAGTTCCAGAAGCGTTATGCCACCACAGTACTGGAGCTGGAGCAGCTCAATAAAGACCTGAACAAGGTGCTGCACGAGGTCCAGCAGTTCTGCTACGAGcTGGCCCCAGATCAGGGCATGGCTCCTGCGGACCGGCCCACAGAGCTGCGTCAGCGCTGTGAGGAGGAGGCCAAGGAGATGGTGCAGCAGACCAACACCCTCCGTGACGACCAGCAGTGCGTCTCCAACGCCAGCCTCACACACCTCATCTCAGGCCTCACTGCCTTACTGCTGCAGATCAAgTGTCTGGCTGAGGGAGGAGATCTGAACTCCTTTGAATTTAAATCACTCACTGACTCTCTGAATGACATAAAGAGCTCAATCGACCCCTCCAACCTCAGTTGCTTCCAGAACAACGTAGAGATTCACGTAGCccatatccagagtggtctgagtCAGCTGGGAAACCTACACGCCTTTGCAGCCAACAACACCAACAcagtctgaacacacacaaagaGTGCGGCCTGGTCAGCATCAACTAAGTGGAACATGCACACTATCTCGAGTGACTGTGAAAGAAGAGGTCGGTTTGTGGCCCCCCTGACTTTCAAACAAAAAGCCCCCACTGAAATGATCTGGCTCAACATGTAGGCTGTTTCGGAGGTTGTGGGGAAATATCCTTACTTTTCTCACAGCTGTCTGTCATCCACCTTTGATTTTATTGTATATATGTCTTTGAAAATGACTTGTTTACTGTAATGAACACAGACAAAATGTCATGTCAAacctaccctggtctatagactagACTTTGGTCACTGCAAGAATTCACAACACAATTTCTGTTGTAGATTTATTCTATGGTCTCATGTGCCAAACAGTACTTCAAGCAGTTTCTATTATAATCCATATTTATTTTTAAGAGTTGGTGATAAAACAAGATTTACCATTTGGAGCTTCCCTTTGTGAGTCAATGTTTTGTGTTCCTTTACTCCACTGGTAGTAAGCACAGGGTAGGCTAAAGAATGTTTTGTAAAATTGTTTATTGTAGATATTTGTACAATACCTTTGAGTACTCTGATTTATCGTTAACATTTCTGTAACATACTCAGAGATGGCTTTTGTAATTGTGTGCACTGAAgagattttttttgtatttttgtaaaaTGAGAATTCTGGTTTTTGATGCAGTTGACTCAAATTGATTGGCAGCCTCGAATATGGCATTGTTGAAGCATCAGACTGACATGTAACCCAAATTCAAACAATACTAAGGTGATAAATGTTTGTTTCCAGAATTTCTCCAGTCACTTTTTGTTTTGTAAATCTGTATATGGGAATTTGTACATATTCCTTGCTCTCATTTTATATTAAACATATAGCCAAGAAAA
>XM_021600801.2
AACATAAATTCAGTCCATAAAAAATTGCCCTGCAGACACACTGTCCCAGAATGCATCTTGACAATATGGTCTTTGAAAAAAGCAGCGCGGCTAATTCAAGATGGCGGAGATGGACCAGCTAGACGAGAGCTCTTCAGCAGAGGCGCTAGTCAGTCTGAAAGAGGGCAGTCTGTCAAATACTTTGAATGAGAAACAAACAAAAGCTCACAACACGAGAGGAAGACACACCTTGGTGTCCATGGAAACGCCCACACGGAGCTCCAAGAGGAGCAGACTgttcagagaggaggaggagcagcgcCTCCCATCCAGATCCCCTAGAAGGAGCCAGAGGGTCACCTCTGTACCCCAGTTTGCTAATGTGACGACCCCAGATAAGAAAGTGTCTCAGAGAATCGGGCTGAGGTTGAGAAACCTTCTCAAACTTCCTAAAGCACACAAATGGTGCATCTACGAGTGGTTCTATTCTAACATAGATGGACCTTTATTTGAAGGTGACAATGACTTCTGCCTGTGCCTGAAAGAATCCTTCCCCAACCTGAAGACCAGGAAGTTGACCCGCGTGGAGTGGGGTACAATCAGGAGACTGATGGGGAAACCCAGACGGTGTTCGTCTGCGTTCTTTGCTGAGGAGCGGACTGCGCTGAGGCAGAAGAGGCAGAAGATGCGTATGCTGCAGCAGAGGAAGTTTTTCGACGTGGCACACTGCAAAGACCTCCCCGACGAGATCCCCTTGCCGCTCGTCATAGGAACCAAAGTCACCGCTCGTCTTAGGGGAGTCCATGACGGCCTGTTCACTGGGCAGATCGATGCCGTGGATACGGGCGCTGCCACTTACCGTGTGACCTTTGACCGGAATGGGCTGGGCACACACACCGTGCCTGATTACGAAGTGCTGAGTAATGAGCCCAACGAGACCATGCCCATCTCAACCTTCGCACAGAAACTGAGACCCTCCCGCTTCCAAAACTTCATGACCCCTCCCAGAGTGACCTACGCCTCCGCCACCACACCAGTCCTCATGGACAATGATCCCCTCATCAGCCAGTCTCCATGGAAAAACAAACTCCCTGGAGCGGACGGAGACACGCTTGGAGGGTTCCCTGTCAAGTTCCTCGTCCAAGTGACGAGGCTCTCCAAGATCCTCATGATCAAGAAAGAACACGTCAAGCACTTGAAGGATATGAACGCAGAAGCTGAAAAACTGAAGTCGTGCTCGATGCCTATAGGCCTAGAGTTCCAGAAGCGTTATGCCACCACAGTACTGGAGCTGGAGCAGCTCAATAAAGACCTGAACAAGGTGCTGCACGAGGTCCAGCAGTTCTGCTACGAGcTGGCCCCAGATCAGGGCATGGCTCCTGCGGACCGGCCCACAGAGCTGCGTCAGCGCTGTGAGGAGGAGGCCAAGGAGATGGTGCAGCAGACCAACACCCTCCGTGACGACCAGCAGTGCGTCTCCAACGCCAGCCTCACACACCTCATCTCAGGCCTCACTGCCTTACTGCTGCAGATCAAgTGTCTGGCTGAGGGAGGAGATCTGAACTCCTTTGAATTTAAATCACTCACTGACTCTCTGAATGACATAAAGAGCTCAATCGACCCCTCCAACCTCAGTTGCTTCCAGAACAACGTAGAGATTCACGTAGCccatatccagagtggtctgagtCAGCTGGGAAACCTACACGCCTTTGCAGCCAACAACACCAACAcagtctgaacacacacaaagaGTGCGGCCTGGTCAGCATCAACTAAGTGGAACATGCACACTATCTCGAGTGACTGTGAAAGAAGAGGTCGGTTTGTGGCCCCCCTGACTTTCAAACAAAAAGCCCCCACTGAAATGATCTGGCTCAACATGTAGGCTGTTTCGGAGGTTGTGGGGAAATATCCTTACTTTTCTCACAGCTGTCTGTCATCCACCTTTGATTTTATTGTATATATGTCTTTGAAAATGACTTGTTTACTGTAATGAACACAGACAAAATGTCATGTCAAacctaccctggtctatagactagACTTTGGTCACTGCAAGAATTCACAACACAATTTCTGTTGTAGATTTATTCTATGGTCTCATGTGCCAAACAGTACTTCAAGCAGTTTCTATTATAATCCATATTTATTTTTAAGAGTTGGTGATAAAACAAGATTTACCATTTGGAGCTTCCCTTTGTGAGTCAATGTTTTGTGTTCCTTTACTCCACTGGTAGTAAGCACAGGGTAGGCTAAAGAATGTTTTGTAAAATTGTTTATTGTAGATATTTGTACAATACCTTTGAGTACTCTGATTTATCGTTAACATTTCTGTAACATACTCAGAGATGGCTTTTGTAATTGTGTGCACTGAAgagattttttttgtatttttgtaaaaTGAGAATTCTGGTTTTTGATGCAGTTGACTCAAATTGATTGGCAGCCTCGAATATGGCATTGTTGAAGCATCAGACTGACATGTAACCCAAATTCAAACAATACTAAGGTGATAAATGTTTGTTTCCAGAATTTCTCCAGTCACTTTTTGTTTTGTAAATCTGTATATGGGAATTTGTACATATTCCTTGCTCTCATTTTATATTAAACATATAGCCAAGAAAA

Function

NR:

description
protein lin-9 homolog isoform X2

GO: NA

KEGG:

id description
K21773 LIN9; protein lin-9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600800.2 False 2610 mRNA 0.47 15 23509072 23525525
XM_021600801.2 True 2607 mRNA 0.47 15 23509072 23525525

Neighbor

gene id symbol gene type direction distance location
parp1 parp1 coding upstream 2505 23494771 ~ 23506567 (+)
LOC118964414 NA coding upstream 17309 23489022 ~ 23491763 (+)
LOC100136772 LOC100136772 coding upstream 120502 23382192 ~ 23388570 (+)
snx9b snx9 coding upstream 152054 23324438 ~ 23357018 (+)
LOC118964451 NA coding upstream 395999 23107820 ~ 23113334 (+)
LOC110522421 LOC106608030 coding downstream 4387 23529912 ~ 23538153 (+)
nhsl1b nhsl1 coding downstream 16924 23542449 ~ 23719666 (+)
trnaa-ugc-7 NA coding downstream 25232 23550757 ~ 23550830 (+)
ccdc167 ccdc167 coding downstream 220010 23745535 ~ 23748393 (+)
LOC110522416 NA coding downstream 242964 23768487 ~ 23772991 (+)
G333399 NA non-coding upstream 25005 23483828 ~ 23484067 (+)
G333398 NA non-coding upstream 25368 23483468 ~ 23483704 (+)
G333348 NA non-coding upstream 104553 23400991 ~ 23404519 (+)
G333252 NA non-coding upstream 271644 23235319 ~ 23237428 (+)
G333447 NA non-coding downstream 60693 23586218 ~ 23586493 (+)
G333452 NA non-coding downstream 70904 23596429 ~ 23596646 (+)
G333464 NA non-coding downstream 94571 23620096 ~ 23620517 (+)
G333466 NA non-coding downstream 101571 23627096 ~ 23627335 (+)
G333474 NA non-coding downstream 111754 23637279 ~ 23637627 (+)
G333079 smyd2 other upstream 550876 22955879 ~ 22958196 (+)
G332507 NA other upstream 915710 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1010076 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 1807458 21683716 ~ 21701617 (+)
G330771 NA other upstream 2687915 20820668 ~ 20821157 (+)
G334116 NA other downstream 308296 23833821 ~ 23837875 (+)
si:ch211-51e12.7 NA other downstream 538306 24063831 ~ 24072963 (+)
G334475 NA other downstream 892057 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 894589 24420114 ~ 24422731 (+)

Expression


Co-expression Network