XLOC_022445 (tmem201)


Basic Information

Item Value
gene id XLOC_022445
gene name tmem201
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29827134 ~ 29858087 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044272
GACCATTGTAGATTGATGCGCGCGTCTGTTGCCGCATGCACTCCAGTTGCGTGTAGCTTCCTTTGAATAACACTACTGTCAAAATATCGATCTGCAATGGAGGCCTTGAACCAAATATTAATAGAGTATCCGCCGCTTGTAGTCGGTGGCGTGGGAGCGACCGCGGTTGCAGCAGGAGGAGCGCTGATCTACAGAATTGCAACCAGGAAGAAACCGACTCATCTTCAAGTGAATTGTTGGTTCTGCAATCAGGACACAGTTGTCCCCTATGGGAACAGAAACTGCTGGGATTGTCCATATTGTGAACAGTATAATGGCTTTCAGGAGAATGGGGACTACAACAAACCCATTCCTGCTCAGTACATGGAGCATCTGAATCATGGTGTTTCCGCCGGCGTCCCCGAGACCCCCAAGACCCTGCAGTGGGTCAACTGTCAGATGCTTTTGTGCAAGAAGTGCAACAACAACCAGACGCTGAAGATCAAGCAGCTGGCCTCGTTCATCCCCAGGGAGGATGAAAACTACGATGAGGAGATTGAAGTTTATAAGCACCACCTCGAACAGACCTACAAGTTGTGCCGACCATGCCAGACAGCAGTGGAGTACTACATCAAACACCAGAACCGGCAGCTGCGGGCGCTGCTCTTCAACCACCAGCTCAGACGCACTCGGGACGCAGATAAAGCCTTCATTAAGaacaCTTACTCTCTCTCCACCCCGGCCTGGTTGATCTTGCTCAGGATTCTTACGTTTCTCGCTTGTGCCTTTTTGGTAGCTGTGGCTTTGTCTGGATATGTAGACGAGAGCCCCTCTGTCACGCAGACCTTGAGCGGAGGAGTCGTTCCACCTAAGCGAGTCCTTCAGAATGAGAATGAAAGCAAGACTGATGAGGGCAGCTTGATGTGGGACGATCTGATGGGTCTCCTTCCGGAAAAAGCAGTGGAAAACGCTCGACTCTTCTGGCAGTCTGGAAGCGACCACCAAATGGCCGTGGCCTCTGTTGGACTCCTTACTTGCATCACAGGTGTCTTAATGGCAGGACCTGTcaggTTAAGGAGGATTGATGCTGTGGCTTCTGTGCTCTGGCTCCTGGTGATCTGTTTCTACCTGGCCGAGTGTTACCTGAAGACAGACGTCCCAAGCTGGCTGGAAATGGTCAAGTTTGGCATCACTTCTGTGTGTTGTCTGGTGGGATTCGCTGCCGCTGTGGCAACACGCAAATCCACAAGTCAGAGAAGAGCCAGAGGTCGCAGGTATCTGTCTGGTGGTTCTCCAGGAGAGTTCTTCTGTAATCATGGGCCGCTGCTGTCTGCACCTGTGTCTGAATCCTCCACCTTTATCCCGACGCCTCCACCCAACCTGTCCCAGCTGCTGATTCGCCAGCAGAGCCAGCGAACCCGCAAAGCCTCCCCCTCCTCACTGCCTGGCCGGCTCAACAGAGCCCTCTCTTTGGGCACCATCCCTTCACTTGCACGCACAGattCAGGTTTCCTGTTCAGCGGCAGCAGACCATCTTCACAGTGTAAAGACTCGCCACCTTCAGACTACTACTCTCTAAAATCTGGAAGCAGACCCTCCTCTCCTGGACCGTCTCCGACCCCCTCGGTGGCAGGATCTGTGACTTCCACCTCCAGCTCGGCCAGGCAACGCCGGCCGCTCATCAGCCCAGCCAGGCTTAACATCAGTGGGCAGAAGCTGCGGCTCTTTTCCTCTCCTCTAGAGCCCTTCAGTTTGGCCTCACCGCCTCCGTTTCTTTCAGAGCACAATCCTATGCACAGCAGAGGATTCTTGCCTGATGTTCCACACTTCCATTTACAAAATCATGGTTCAGTGATTGACGAGGGAAGTGTATTTGAGCATTTGGAGAAGCCAATGGGAAGCTCTTCTTCATCCTCAAACTGCCATGTAGACACCACTACAGGAAATAATATTGAAAGCAAGCCTGGATGGAAGGGTTTTTTGGGCATGACGCTTTGGCCTGGTCTGCTCTTTGCGAGCTTGACTATTAACCTAACGTTCATTTGCATCTATGTCTACTATAATTGGAGATGAGGACATAGATCAGGCCACAGGAGTTCAAGCTCAAACTGCGATGTACACGGGCCCTTGTCGCCTGGTTGCTCAGTGAATTTGGGCCCTTAACAGGAAAAACATGGAGCATTTTCCTTTGGGTGATAACTACAACTTTCTACAACATTTTTGCTGCTCAACAATCGCTAAGGATTGTTTTCTGGCTCACGTAAATGGGAAGagtgttttctcttgaacttgaGTTCTTTTAAGTATCACTTGAGCTTTGAAAACATGTTTTTTGGTGCATGTTCagtcatttatttgtgtttttaaacactGGATATGTATTGGAGCGAATGATTGTGCTGTTTAAGCTTAACAGAACGATGTCTGTTGGGCATGTGAAGCATCTTTATGAAATATTAATTTGGCTTCTTTGCCATATTGCTGTACAAGCGTTTCTGTTTATCCTACTACTTCAAAGATAATGTCATGTCATTATCAGAATGATGCGATATTAAAAGGTGCAATATGTTTTGGGATTATGTAATTTTGACAACATTGTGACACTGAAATATTTGGTTTGGCAAATCATATTGTCCATTGAGcctttttgactcattattttaaGGTAAACAGGATATTTTGTACATAAGATAAAGACATTTCAGTTTCCAGATTGAAATAAATCTTGTTACGTA

Function

symbol description
tmem201 Predicted to enable actin filament binding activity and lamin binding activity. Predicted to be involved in nuclear migration along microtubule. Predicted to be located in membrane and nucleus. Predicted to be integral component of nuclear inner membrane. Predicted to be active in nuclear membrane. Orthologous to human TMEM201 (transmembrane protein 201).

GO:

id name namespace
GO:0030473 nuclear migration along microtubule biological_process
GO:0005634 nucleus cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0031965 nuclear membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005521 lamin binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-61 Predicted to enable actin filament binding activity and lamin binding activity. Predicted to be involved in nuclear migration along microtubule. Predicted to be located in membrane and nucleus. Predicted to be integral component of nuclear inner membrane. Predicted to be active in nuclear membrane. Orthologous to human TMEM201 (transmembrane protein 201).

Ensembl:

ensembl_id ENSDARG00000077307

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044272 True 2714 mRNA 0.48 11 29827134 29858087

Neighbor

gene id symbol gene type direction distance location
XLOC_022444 zgc:194189 coding downstream 2988 29823286 ~ 29824146 (-)
XLOC_022443 NA coding downstream 4569 29821201 ~ 29822565 (-)
XLOC_022442 pik3cd coding downstream 14467 29756603 ~ 29812667 (-)
XLOC_022441 ctnnbip1 coding downstream 75404 29711569 ~ 29751730 (-)
XLOC_022440 NA coding downstream 120775 29674995 ~ 29706359 (-)
XLOC_022447 slc25a33 coding upstream 3156 29861243 ~ 29878643 (-)
XLOC_022448 CU695073.1 coding upstream 42564 29900651 ~ 29901235 (-)
XLOC_022449 NA coding upstream 151176 30009263 ~ 30010819 (-)
XLOC_022450 ccdc187 coding upstream 155153 30013240 ~ 30045733 (-)
XLOC_022451 NA coding upstream 196347 30054434 ~ 30059176 (-)
XLOC_022433 NA non-coding downstream 468920 29333853 ~ 29358214 (-)
XLOC_022432 CR677617.1 non-coding downstream 569418 29185852 ~ 29257716 (-)
XLOC_022427 NA non-coding downstream 1373431 28433175 ~ 28453703 (-)
XLOC_022453 CR456642.2 non-coding upstream 659112 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 non-coding upstream 749896 30607983 ~ 30608101 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_11957291_11972213 TMEM201 coding CI01000001 null 11956592 ~ 11972549 (-)
bowfin (Amia calva) AMCG00002285 NA coding CM030136.1 CM030136.1 10066912 ~ 10076666 (-)