LOC110522416


Basic Information

Item Value
gene id LOC110522416
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23768487 ~ 23772991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473313.2
TCAAAACAGCCCTTGACAGTgcaggtgtgtgttggtgtttttGAGCAGGCGTGTGTGTTCTTCGGACACAGGAGAGAGCTGCCACCGCCGCACTCAGCCCAGTGGAGGACACCAAGgccagagtgagagaaggagagagagaagggacatagaGCCAGGTTGCTAAAAAATAAACTCCTCAGGGTTGTTGGAGAGTTGATCTGGTTTCTGCTGGGAAAAGGTTCTAGAGACCGCTAAGATGTTTTTCCGCATCCCTCGACTGACCCCTGGATACATCAGATACTTGCAGACTCAAGCTGCCCAGACCGTGCTGCAGAGCCGGGAAGGCCCCATGATGTCGAGGGTGGCCATGCTGCTCGGGCTGATGGGAGTTGGGATGTCTGGGTACAGCTCACGACAGCTCACCCTGCACTGCAAGCCCTCCGCTAACCTGCTGAGATGAGGCAAGACACAACACCTCTGACCTTCCACCCTGAAGACGACAACATGGATTAGATCGATCACTGGAGCATATCCAATACCCCTGGATTCCACTTACACTACAAGAATAATTAGTCTCTGTTTCCTAAAAAGGTTTTGTTTTAGTTGAGTTTTTTGTTTGTTACCCTTGCACCTTTGATTTCCCCCATTGTGGTTGAAGTTTGGGACGAACCAAGTTCAGATTCTTATTCTGAAGAGTTTAACATTGAAGATCGATACTTTAAGGTTCTACACGTGCAGTTATGACCATATAAGATTATCcctccatttaaaaaaatctatgttCTTTTAAACTACCTCTCCCTTT
>TU377436
GATCAAAACAGCCCTTGACAGTgcaggtgtgtgttggtgtttttGAGCAGGCGTGTGTGTTCTTCGGACACAGGAGAGAGCTGCCACCGCCGCACTCAGCCCAGTGGAGGACACCAAGgccagagtgagagaaggagagagagaagggacatagaGCCAGGTTGCTAAAAAATAAACTCCTCAGGGTTGTTGGAGAGTTGATCTGGTTTCTGCTGGGAAAAGGTTCTAGAGACCGCTAAGATGTTTTTCCGCATCCCTCGACTGACCCCTGGATACATCAGATACTTGCAGACTCAAGCTGCCCAGACCGTGCTGCAGAGCCGGGAAGGCCCCATGATGTCGAGGGTGGCCATGCTGCTCGGGCTGATGGGAGTTGGGATGTCTGGGTACAGCTCACGACAGCTCACCCTGCACTGCAAGCCCTCCGCTAACCTGCTGAGATGAGGCAAGACACAACACCTCTGACCTTCCACCCTGAAGACGACAACATGGATTAGATCGATCACTGGAGCATATCCAATACCCCTGGATTCCACTTACACTACAAGAATAATTAGTCTCTGTTTCCTAAAAAGGTTTTGTTTTAGTTGAGTTTTTTGTTTGTTACCCTTGCACCTTTGATTTCCCCCATTGTGGTTGAAGTTTGGGACGAACCAAGTTCAGATTCTTATTCTGAAGAGTTTAACATTGAAGATCGATACTTTAAGGTTCTACACGTGCAGTTATGACCATATAAGATTATCcctccatttaaaaaaatctatgttCTTTTAAACTACCTCTCCCTTTCAAACCAGTTAAAGTGTTATTCAGCCAACATACATCAATCCATTCTTATTGAGCTCTTAATGTTTTCTTGAGCTGGTAACATCCTCAACTTTAACCACCCATTTTCTTTTTGTAATTCTGTGCCTTAAATCCATTAAAATCAGTTTAAAACACCAAATGGTGTTACCTCACGCTAACCCAAGAAGACCAAAACCCAAGAAATAAAGACATCGCAATGGAGAAATATTAAATATGTCAAATATTTTTCAAAACCTGACGAAATTCCCCAGTCCGCCTGTTTATTGCCATTCTCTTGTCTCTGTTTGGCAAGGCATGTATACAGAGATTAGCACCTCTGTTTTAGGGAAGGTATCCAGTGTTTTCCTGAATAATGTCACGAGTGGCAGGAAAGAAGAGCGAAATCAAAATGGTAGCATCTTGGAACTCCGGGAATCCAGTTGGTCATAGGgattataaaaatgttttttgtcTGTTATCATCAATGCTCTTGATTCCTTCATTTGGTACTTGCTTTACTTTCTTTGTCTGCTATGTTTGCATGCAAAGAAATACAGGAAAAATCCTTTGACCAAGATTCAAAATGTACTCAATCGACCTGCTTCCAATTGTATTTTCTAATGTCTTTTTTTATTTGGTCAAGCCCAACTTTTTTCCATTGAACCTTTTTGATTTTGCACAGTGAAAAGATTGATATTTTTACATACATTCTTTTCACCAAAACACTCTGACACTTTGCACTTTTTtaagaatgtatgtgtgtgtacataatATGTACATAATGTACATATCTGAATTATTGAAGCTTGAAGAGATTAGTAGATGGTTAAGTGACATGGAAAGTGACGCCAGATTGGTTTGAGAACTAGTCTGGGTGGAATCCAGCTGGATTCACACACGGCACCACAGTTTGGTATCAGGCATCCAGGGCAGCCACCCTGGATGGACCTCACTGGACGAATGCCACCGTATGTGTGAATTCACCGAGATTCCTCCAAGTTGTCCTCCATGTTTGTCAGAATTGGGATGTTTAGATTAATGGCCACATGGTCTCTTAACATAGCTAGCATGAAATACTATTTATATTTCCTTTAGATTCAGAACATGCAGTACACACTTTGTAATAAGGGAAATAACTTTAACACGACAGCATATGAATGTATCACCGACACAATGAATGTTTCTTAGTGGTATACTGTAATTGTAAACATGAACgtactgtaggttactgtgtCATAACCATGGGATCCCACTAGTCTGGTTTAGAGGAAACAGTGGATGTAACCAGACCTTAGATttccactggattctccaatggAACAGATTACCATGCCGTTGGTAGTTGTCCAGTGATCCAGTGGTCTTCCGGTGATCCAGTAGTCTTCCGGTGATCCAGTGGTCTTCCAGTGATCCAATTAGGAGAAGTGTCTCTTTTATGTCCAGCTTCACCAGTATAAAGGGTTAGTGACCCTAAATAGTGACCCTAAATAGTGACCCTAaatagagaccctgctatagagACCCAGACCAGTGAGAGGAACATAGTAGGAGTTCTGAAACCCCTAGTTTATCTTAGTCAATGTAATGTTACATGAACTTGGTGAAGAACTGACACAGAATTCAATTGGGAACATGATTGATATTGAAAGCTGCAATGGAGGAGTGATGTTATCTCATACACAGTGTAATGGGTCATTGCTGTTTAATAATTATAGTACACTACAGTGCTGTTTGTTTTACATGGTTACATTTCATACCAAAAGGCTTACAATAGGCCTATCTTTGTGTTGTTGCTAAATGTAACAATGTTGTTTAGGAATGCCATAGTGAATTGAAGAATTATGACTGCTTCACAAAGCACCCTTGAATATCTATTCATGTTTATTGTTATGATACAGCATGTATCAATACTATGAATAAAAACCTATAAACGGATGAAA
>TU377437
GATCAAAACAGCCCTTGACAGTgcaggtgtgtgttggtgtttttGAGCAGGCGTGTGTGTTCTTCGGACACAGGAGAGAGCTGCCACCGCCGCACTCAGCCCAGTGGAGGACACCAAGgccagagtgagagaaggagagagagaagggacatagaGCCAGGTTGCTAAAAAATAAACTCCTCAGGGTTGTTGGAGAGTTGATCTGGTTTCTGCTGGGAAAAGGTTCTAGAGACCGCTAAGATGTTTTTCCGCATCCCTCGACTGACCCCTGGATACATCAGATACTTGCAGACTCAAGCTGCCCAGACCGTGCTGCAGAGCCGGGAAGGCCCCATGATGTCGAGGGTGGCCATGCTGCTCGGGCTGATGGGAGTTGGGATGTCTGGGTACAGCTCACGACAGCTCACCCTGCACTGCAAGCCCTCCGCTAACCTGCTGAGATGAGGCAAGACACAACACCTCTGACCTTCCACCCTGAAGACGACAACATGGATTAGATCGATCACTGGAGCATATCCAATACCCCTGGATTCCACTTACACTACAAGAATAATTAGTCTCTGTTTCCTAAAAAGGTTTTGTTTTAGTTGAGTTTTTTGTTTGTTACCCTTGCACCTTTGATTTCCCCCATTGTGGTTGAAGTTTGGGACGAACCAAGTTCAGATTCTTATTCTGAAGAGTTTAACATTGAAGATCGATACTTTAAGGTTCTACACGTGCAGTTATGACCATATAAGATTATCcctccatttaaaaaaatctatgttCTTTTAAACTACCTCTCCCTTTCAAACCAGTTAAAGTGTTATTCAGCCAACATACATCAATCCATTCTTATTGAGCTCTTAATGTTTTCTTGAGCTGGTAACATCCTCAACTTTAACCACCCATTTTCTTTTTGTAATTCTGTGCCTTAAATCCATTAAAATCAGTTTAAAACACCAAATGGTGTTACCTCACGCTAACCCAAGAAGACCAAAACCCAAGAAATAAAGACATCGCAATGGAGAAATATTAAATATGTCAAATATTTTTCAAAACCTGACGAAATTCCCCAGTCCGCCTGTTTATTGCCATTCTCTTGTCTCTGTTTGGCAAGGCATGTATACAGAGATTAGCACCTCTGTTTTAGGGAAGGTATCCAGTGTTTTCCTGAATAATGTCACGAGTGGCAGGAAAGAAGAGCGAAATCAAAATGGTAGCATCTTGGAACTCCGGGAATCCAGTTGGTCATAGGgattataaaaatgttttttgtcTGTTATCATCAATGCTCTTGATTCCTTCATTTGGTACTTGCTTTACTTTCTTTGTCTGCTATGTTTGCATGCAAAGAAATACAGGAAAAATCCTTTGACCAAGATTCAAAATGTACTCAATCGACCTGCTTCCAATTGTATTTTCTAATGTCTTTTTTTATTTGGTCAAGCCCAACTTTTTTCCATTGAACCTTTTTGATTTTGCACAGTGAAAAGATTGATATTTTTACATACATTCTTTTCACCAAAACACTCTGACACTTTGCACTTTTTtaagaatgtatgtgtgtgtacataatATGTACATAATGTACATATCTGAATTATTGAAGCTTGAAGAGATTAGTAGATGGTTAAGTGACATGGAAAGTGACGCCAGATTGGTTTGAGAACTAGTCTGGGTGGAATCCAGCTGGATTCACACACGGCACCACAGTTTGGTATCAGGCATCCAGGGCAGCCACCCTGGATGGACCTCACTGGACGAATGCCACCGTATGTGTGAATTCACCGAGATTCCTCCAAGTTGTCCTCCATGTTTGTCAGAATTGGGATGTTTAGATTAATGGCCACATGGTCTCTTAACATAGCTAGCATGAAATACTATTTATATTTCCTTTAGATTCAGAACATGCAGTACACACTTTGTAATAAGGGAAATAACTTTAACACGACAGCATATGAATGTATCACCGACACAATGAATGTTTCTTAGTGGTATACTGTAATTGTAAACATGAACgtactgtaggttactgtgtCATAACCATGGGATCCCACTAGTCTGGTTTAGAGGAAACAGTGGATGTAACCAGACCTTAGATttccactggattctccaatggAACAGATTACCATGCCGTTGGTAGTTGTCCAGTGATCCAGTGGTCTTCCGGTGATCCAGTAGTCTTCCGGTGATCCAGTGGTCTTCCAGTGATCCAATTAGGAGAAGTGTCTCTTTTATGTCCAGCTTCACCAGTATAAAGGGTTAGTGACCCTAAATAGTGACCCTAAATAGTGACCCTAaatagagaccctgctatagagACCCAGACCAGTGAGAGGAACATAGTAGGAGTTCTGAAACCCCTAGTTTATCTTAGTCAATGTAATGTTACATGAACTTGGTGAAGAACTGACACAGAATTCAATTGGGAACATGATTGATATTGAAAGCTGCAATGGAGGAGTGATGTTATCTCATACACAGTGTAATGGGTCATTGCTGTTTAATAATTATAGTACACTACAGTGCTGTTTGTTTTACATGGTTACATTTCATACCAAAAGGCTTACAATAGGCCTATCTTTGTGTTGTTGCTAAATGTAACAATGTTGTTTAGGAATGCCATAGTGAATTGAAGAATTATGACTGCTTCACAAAGCACCCTTGAATATCTATTCATGTTTATTGTTATGATACAGCATGTATCAATACTATGAATAAAAACCTATAAACGGATGAAATTGTCCCTCTATTCTTCACCTTTCTTGTCATGTTTGGCAGTAAAAAGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473313.2 False 787 mRNA 0.48 2 23768489 23771004
TU377436 False 2726 lncRNA 0.41 2 23768487 23772941
TU377437 True 2776 lncRNA 0.41 2 23768487 23772991
Loading

Neighbor

gene id symbol gene type direction distance location
ccdc167 ccdc167 coding upstream 20096 23745535 ~ 23748393 (+)
nhsl1b nhsl1 coding upstream 48823 23542449 ~ 23719666 (+)
trnaa-ugc-7 NA coding upstream 217659 23550757 ~ 23550830 (+)
LOC110522421 LOC106608030 coding upstream 230336 23529912 ~ 23538153 (+)
lin9 LOC106608031 coding upstream 242964 23509072 ~ 23525525 (+)
si:ch211-225h24.2 tdrp coding downstream 7607 23778611 ~ 23801507 (+)
acp1 NA coding downstream 95736 23866740 ~ 23879587 (+)
LOC110522408 LOC106608020 coding downstream 253930 24024934 ~ 24034274 (+)
LOC110522407 gen1 coding downstream 281544 24052548 ~ 24060425 (+)
msgn1 LOC106608038 coding downstream 290673 24061677 ~ 24063116 (+)
G333528 kif25 non-coding upstream 30349 23735093 ~ 23738140 (+)
G333508 NA non-coding upstream 83624 23684555 ~ 23684865 (+)
G333507 NA non-coding upstream 86937 23681353 ~ 23681552 (+)
G333506 NA non-coding upstream 88020 23680211 ~ 23680469 (+)
G333504 NA non-coding upstream 89166 23679107 ~ 23679323 (+)
G334078 fbxo25 non-coding downstream 37850 23808854 ~ 23809760 (+)
G334105 NA non-coding downstream 49577 23820581 ~ 23820857 (+)
G334110 NA non-coding downstream 54298 23825302 ~ 23825540 (+)
G334116 NA non-coding downstream 64633 23833821 ~ 23837875 (+)
G334132 NA non-coding downstream 86551 23857555 ~ 23857813 (+)
G333079 smyd2 other upstream 810293 22955879 ~ 22958196 (+)
G332507 NA other upstream 1175127 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1269493 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 2066875 21683716 ~ 21701617 (+)
si:ch211-51e12.7 NA other downstream 292827 24063831 ~ 24072963 (+)
G334475 NA other downstream 646578 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 649110 24420114 ~ 24422731 (+)
LOC110522376 sash1 other downstream 2280049 25761890 ~ 26057813 (+)

Expression

LOC110522416 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 150.
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LOC110522416 Expression in each Bioproject

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LOC110522416 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10000.
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Co-expression Network