si:ch211-225h24.2 (tdrp)


Basic Information

Item Value
gene id si:ch211-225h24.2
gene name tdrp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 23778611 ~ 23801507 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600791.2
CGACGTGGGAGGAGATCCAGGTGGTGGTCGAGATTCCGCAAACAGACATAGGCTACATCAAATAGGCCTACACCAAAACGTCTTTGAACTGGAGTTTGGCGCTGCATAAAGTCGCTTGCCTAAAAAGCTGTTTTCATGGAAAGGCTCCAAGATCTGTTGTAGTAACCACAGCGGTGGCTCTTACTTGCGATCTCTCGAGAAACGGGAAAAAAAGTTTGACAGAACGAACTCTTCGCTGCGTTTTGATGTGCGCGCGTCCAGATTGATTAAAGAGAAATTTGGAAAGATGTTCAAGAAAAGCAAAAGCAAAGTGTTGGTGGACTATGTGTCGGAGGAGGACGAAATATCCTGGCATCATCAACACACTTACAAGGATAAGGACCCAGAGGGGGAGGACGAGGAAGAGGCAGTGAGCCCTGTATCCAAGGAGGTGAAAGTGAAGAAAGTCAAGTccaagaaggagaggagggataagAAGATGTTTTCTTCTCAGGATGATGAGCACTTCCTACTGACAGGGGTCACACTGGCCGACCGCAGAGGGTCCCACAAGAAGAacaaggaggaagggaaggagaagaACAAGCCAATCACAGAGAAGGGCCACTGCTTCTGGGACAGCGTCACCATGACGATGAGGCAGATCACGCCCACCAGGAAACTGGACAAGCTGGAGGGCTGGGAGCCGCCGCAGTTGCCCGACCAAACCGAGACACCCACCGAGGAGGCAATGGAGGATCAGAGTGGGACCAGGGACTCGCCTGTGTCCTTCCCCCAGGCCCTGGGGCTCCCGCTGGGGCTGCCCTCCTGGACAGGTCTGGGTCTAGAGGAAGACTCGTCGCACTACGCCAACCTGTCAGAATCACGGGATTCCACGGCCGTCAGGTGGACAGCCCGCGCCAAAGGCAAGCTGGCCGGAATCAGGAGGCGGAGCCGAGGGAGTGTTTCGGAGACATGGGAGGGGTTTAAATAAAAGCTTTACCCCTTACCTGCCAGCAATCCCTGCCCCTCACCTCATTCCTCAAATTAAAAGGAGGGAAAAAGacatgcctgtctgtctctgtgctgcATAAAGAACTGATTTTGTATTCCTCCATTGACATTCTGAGTGCAGTCCTGACTTTTCCGTACAGCATGATGAACACAGCCCATATATCCCTGACTGTTCACTCCACAACATAGCAGATGAACTTACAAAGCAGACAAGGTCACTAAAATCTATTATTATTGACTTTGTGTTGAAACTGTGGTGTTTTAATGCTGCAGGGACATTGAGCCTGGGAACACATTATGCTAGGTTGATCTTAGTGGACTGGTTTGGCAGTGTAGAGAAAAGGGTCACCATCTTGAAAAGGATGTCATAGATAAGAGGTTGGAAAGTAAAAAAGAAAACACATGAAGGCCTTACGCTACCTTAAACTGTGCTATCCACTGGCCTTTGACCATTTTATATTATCAAGCCAAGAGAATGATTTCCAAAGGAGATTTTGTTTTGTAACATAGGCATTCATGTTTTATGCTAGAGTGTAGTTTGAGAACAAGACCAACTATGCTACTGTAGGCCTTATTTAATGATACGTTTTCCATGTTGTTTGCCCTCCCTAGCCCTGCAGTAAATGTCTACTGGGAGAGGAATGTGCCAGAAGTCTTAGCTCCTAATAAGCATAGCTAAAAGGCTTAAAATGCTTTGTCCAATAATGTGTAATAAGCCTTCCAGGCTCTGAACCATAAGTGCAAATGTGCGTTAGCGAATATAGGCTGCTGAATCTGGAGTATTGTTAATGAATGATATGATCTAAATGTTGTTACAAGCCCAGCAGATGGCGCTCCGTTGGAGTGTCATGAATACTGTACATTCAAATCTAATGATAAGAAACATTTTCCATGCAATAAGAGGACTGAGCGCCATTTTCTGCATGCAGTCTGTGTGCTGTTTCCCCGATTAGACAAAAAGCCGTGATGTGCCTTtctctacagtatgtgttgtgGCATGCTTCTCTGCTCACCATATTGGAATAGACTACTACTAGACCAAGCTCACCATGAGGATCAAATAATGTGATGGGCAATCCCAGCATGCATCACTGCTGCATCCCTCCCTGGTTTTGACTAAATGGTTTTCAGCTACGGACAGATTTGACTTTTTGTAGCAGGCTAGGAGAACTcacacagcaggttaggataattaggttaaggttaggaaaagggttagggttagctaaaatgcaaaaaCTCCCGGCACGACTAGAACATACAACTAGAACATACAACTAGAACATACGACTAGAAAATATACCATCTAgtataccatctagccacacccctcccttctcatTCATGGCCAGGAGAAACTTCCTGTATTCCAGTTTTCATGGTTTCCAACAATTTTGCCAGCAGCCGAGGTGCTTTTGGGACTGTGACAGAAACTAATTCAACAGACATTGTTAACATGAGATCTGCTGTTGTATGTGCCTGTGTAAATGTGTGTTGGTGCTTTAATAAGATAGCAGTGAGTTATTGAAGAatcattttatttcattttcataGCAAAAACACTgattgttttgtgtgtgattGCAATTGTATATTTTAATTCCAAACAGAATCAGGCTTTCCACTTGTAGGTGGTTCGACTTGGACAATCCTTTCATTTAAATATGTGCCTTTATTTTCAAATCTACTTAGTCCCTTCTTCCACAGCCACGTTTGTGCACAGATATGGGTTCCTTGCCACGATGGCTGTTAAGAGCTTCTGTATTTACTAAAAAGAAGGGTCACATTTGTTCAGAAGAATAAAGACCTGCCCTGCCTGGATTGTTTGGATCTGCTTATTTCAACAAGGTGTCGTTGTGTTCACTCCTAGGTAAATGCATGGTCAGATTTACTGTGTCGGACTTCAACAACGGAATAGTTTACAATGTGGAGAAACATGCAGGAACACTCTCCTTCATACAGCCTAGCCGCTTGCTAGCCAACTAGCTTACATTGGCTGTCATGACTGTTTAGGACTCCTGTTATGAATGCTCTATGCATGGCCTTAACCTCAGACGGAGGGTTCATGTGAATGTTGCCGAACATACTCTGCTCAGTCTCCTGTGATCTGCATGGGTGTTAAGGCTCCATGTCATATTGTAGTGGATTTTATAAGGACAAAGGTCAGATGATTCCCATAGCAACCACAGCCATGAATGCCTTTATTATAATTAGTTCGCTTCCATCACAGGAAATTAATGATTATACCAACAACAGTAGCCAACTATAAGTTACATCTCAGTTGGAATGTCAAAGCAATATTACAACCCCCCCCATAAAGTCATGTTCCCATTTCATTACTGTCTACTTGAAAGTTCTGACAAAAGGTGTATCGTAAAAAGTCATTGTTACAG

Function

symbol description
tdrp Acts upstream of or within spermatogenesis. Located in cytosol and nucleus.

NR:

description
testis development-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600791.2 True 3386 mRNA 0.45 4 23778611 23801507
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522416 NA coding upstream 7607 23768487 ~ 23772991 (+)
ccdc167 ccdc167 coding upstream 30218 23745535 ~ 23748393 (+)
nhsl1b nhsl1 coding upstream 58945 23542449 ~ 23719666 (+)
trnaa-ugc-7 NA coding upstream 227781 23550757 ~ 23550830 (+)
LOC110522421 LOC106608030 coding upstream 240458 23529912 ~ 23538153 (+)
acp1 NA coding downstream 65233 23866740 ~ 23879587 (+)
LOC110522408 LOC106608020 coding downstream 223427 24024934 ~ 24034274 (+)
LOC110522407 gen1 coding downstream 251041 24052548 ~ 24060425 (+)
msgn1 LOC106608038 coding downstream 260170 24061677 ~ 24063116 (+)
si:ch211-51e12.7 NA coding downstream 262324 24063831 ~ 24072963 (+)
G333528 kif25 non-coding upstream 40471 23735093 ~ 23738140 (+)
G333508 NA non-coding upstream 93746 23684555 ~ 23684865 (+)
G333507 NA non-coding upstream 97059 23681353 ~ 23681552 (+)
G333506 NA non-coding upstream 98142 23680211 ~ 23680469 (+)
G334078 fbxo25 non-coding downstream 7347 23808854 ~ 23809760 (+)
G334105 NA non-coding downstream 19074 23820581 ~ 23820857 (+)
G334110 NA non-coding downstream 23795 23825302 ~ 23825540 (+)
G334116 NA non-coding downstream 34130 23833821 ~ 23837875 (+)
G334132 NA non-coding downstream 56048 23857555 ~ 23857813 (+)
G333079 smyd2 other upstream 820415 22955879 ~ 22958196 (+)
G332507 NA other upstream 1185249 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1279615 22498500 ~ 22498996 (+)
LOC110522308 LOC106607893 other upstream 2076997 21683716 ~ 21701617 (+)
G334475 NA other downstream 616075 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 618607 24420114 ~ 24422731 (+)
LOC110522376 sash1 other downstream 2249546 25761890 ~ 26057813 (+)

Expression

si:ch211-225h24.2(tdrp) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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si:ch211-225h24.2(tdrp) Expression in each Bioproject

Bar chart with 20 bars.
si:ch211-225h24.2(tdrp) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network