XLOC_022446 (FP101914.1)


Basic Information

Item Value
gene id XLOC_022446
gene name FP101914.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 29841211 ~ 29844314 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044273
GTACGTTGCTTGGCACTGCTTATTGTATTGTGCACCATatatttattacactgtaaaattaGAAAAATGCACTTCGTTTTATTACACGCTATTTAGTTTGAATTCTGCTAACCACACTAAAGCGCTGTAACGTCGCCTCCACGTTCCActaatgtttgtttatatatgttttttaaagctttaaaatgaaaaGCCTCTTTTACCTGTTGGTTATGTATTGTAATGTGTTTGCTGTTTTAGAGTGTGACATCATATGAGTGTATGACTATAGGTtgtatgtttctgtaggtttgcATCACTGTATTTCCCAAGTTACTGTATGCATGTGGCGTATGCTGTGAAGTTCATTTTTTGCTGTGATCAAAGTGCTTATTAATGTGACTTAGACATTAACTGTCTGCAGCTTTTGTGTTATTCAAATCAAGTCTTTTTCAAATTTTGTGAGTTTACCAAGCACTCATGTGTAATAATGGGATGGTTCACCCAGAAATTAACTTTCATTTTATGCAAGCTCGAATATTCCAAATGTTTCtatcttctgctaaacacaaaagatgatgtttTCATGAACATGCAGAACCAAATTGTTGACGTCTCTACTGAGTTATTATAAGGATCTCATTCTttacatcttattttgtgtttgtcaCAAGAAATTTCATAAAATTTTGAAGacttgagtaaataatgacagaattgtcatttttgggtgtacaAACTTTTTAGTCCATGCAGATTTAGTGGTACTTGTCCACTTTTGACAAACTGTAAGGTTCTCAACAAGCTTTTACATATTTAGAATTTCAAACTGCCAAAATTGAAATGTGCCTATGTAAAAAGCTCTAGTTAAAGCTCTGTCATCACTGACTTCTATAGCATGAacaaaaatactgtggaaatcaaaGGTTTCCGTCTACTTTCTGGTTATCAATGCTCTTCAAAAACACGTTCATCTGTGTTCAGCCAAAGAAAAGACTGGATAGAGCACAAATGAGGACcgaatttttttattgttatgataATGTgatctgtttgtggcacatttctgttatttaagtattttactgTAGACGTTCATATTCCTCGTCATCATAGTATGTTTTTACCAAAGTTGGTTGGTAAATACTAATAGTGTGTATTTGAATCTGACATTAATACTAGTATctcaaaataatgtaaaacatttaTGTAGCACAGTAGACTATTTTGTAAGTATACTCAATACTTCATTGACTacctattttatttttgtaatgtcaCCTCATGTCTCCCTCCCcaactttatattatttaatatagaaTGTGAGTGTAACTGAATGAAGCTGAATTTAACACTAAGGATTTATAAGGTAAGACTGAAAATACAGGTCTGTGCTTGTTGTATCAGAAGGCGCATGGTGATATTAAAGTCATAAAAGTAAATGGGTTTCTGTTGATAATGTCTACTGTTGAGGTCAATTAAAGGGTTAGATTTGGATTAGTTTAGTGCTTATAAGCAATTATGGTACCCTTAAACCTTTAAACTTCGCCTGGTATCAACGTGTTCATATGGATTTAATGTTGTAAATTATATTCAGATTTCATAGAGAACATTTGTTGTATTTCATTATGCTCTCCATCACTTTTCTTGTGAGTGTACGGATGAATTAATAAACCCACGTTACATAGCTTATAAGTAGGGCCAGGCAGAATCTGCtggcattttttgctatttctgcacaatTTAGGCTAAAATATTtcgagagtatcataactaaacacctaatatattaaataaaaaataataacttttttcttttcactgcaaatccatttagattcacttatttagtaaacaaatcaagtctctcatctaatatatctactaaaagacagaaaatataactttacaaactgtattgtgaattGATCAATTTCATATTAGGCAATAATACTGAAATTGATTTAAAAGCTGAATAGATAATGTACACATGTAAGTAAATACACTTGGTAAGCTAGAAATCTGCGGAGATCTGTGTGTGGacctatccacttgttaagtgtgacgtcacgcgaagtggcttccgggtccaagcactctattcaactgaatggggagactcatgaaatggtactaataaacgtttacaaagcgatttaaggcttttgaaaatcacgatcgcaatatatatgtccatgcctaatatccgatggccagaaagtgatacattttttgtaaattgttaaaattttggtatttgttatgcagcaagccaagagattgttgtgtacacaatgattttatataaaattaactttaatgtgtgataggaataaaacgtgatcataaactaatgatttctccactcaagtgagtggcggcttggacccggaaacagtattacatacgtcacaaacacgtcaccacttaacaagcggatttacAAGTAAGTGCGAAAGCGAGTGGTTGAAACTAAATTGAATGGAAACCAATATTTTGATTGTAAGagcttttgttttgatttgctttCTTGAAGCTCATCACATCATTAAGGTGAAATTAGGTCGTTTTTGTTTCGCTTCAGTTTGTATGCATTGAGCACATGAGCATTTACACTATGAAAGCAGTCTAATTAGGGCATTTTGAATACCTCTGAAGGAGTCCACTTTTTATCTGATTGGCAAGAATGTATCCTAATACGAGGTGTAAACAGCACCTAGAGCCTGTTTTGGCCGTTGACCATTACAGATCTAAAACATTCATTTGAGCTTTTTGGTTCTTCATTACAAATAGGCCTATTTATAGAAACCTCTAGTCAGAATATTTTTTTGCCATTGCTCTTTCTGGTATACCATCAACCCCAGATCAGTGTTTTTAGTTCTTTACCTGACCTCTCAGATATAATGTGAATTGCAATGCTGAATAGTGTGAAACCATTTCCGTCCAGAAACGTAAGCTAAAGTTTGTTATGATGTCTTTggagtgttgttgttgttttataattggagtaaAGCAGCATGTTGGAGTAATCGCTGTACTAAGATTGGATTGTATTGGATTCTTTTATACCTTGTATTGTTTAACCCTATTATGAAAGTGAAATAAAACACTTACAAAATCCAAA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048731 system development biological_process
GO:0045445 myoblast differentiation biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0045661 regulation of myoblast differentiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000100857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044273 True 3104 lncRNA 0.33 1 29841211 29844314

Neighbor

gene id symbol gene type direction distance location
XLOC_022444 zgc:194189 coding downstream 17065 29823286 ~ 29824146 (-)
XLOC_022443 NA coding downstream 18646 29821201 ~ 29822565 (-)
XLOC_022442 pik3cd coding downstream 28544 29756603 ~ 29812667 (-)
XLOC_022441 ctnnbip1 coding downstream 89481 29711569 ~ 29751730 (-)
XLOC_022440 NA coding downstream 134852 29674995 ~ 29706359 (-)
XLOC_022447 slc25a33 coding upstream 16929 29861243 ~ 29878643 (-)
XLOC_022448 CU695073.1 coding upstream 56337 29900651 ~ 29901235 (-)
XLOC_022449 NA coding upstream 164949 30009263 ~ 30010819 (-)
XLOC_022450 ccdc187 coding upstream 168926 30013240 ~ 30045733 (-)
XLOC_022451 NA coding upstream 210120 30054434 ~ 30059176 (-)
XLOC_022433 NA non-coding downstream 482997 29333853 ~ 29358214 (-)
XLOC_022432 CR677617.1 non-coding downstream 583495 29185852 ~ 29257716 (-)
XLOC_022427 NA non-coding downstream 1387508 28433175 ~ 28453703 (-)
XLOC_022453 CR456642.2 non-coding upstream 672885 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 non-coding upstream 763669 30607983 ~ 30608101 (-)

Expression


Co-expression Network