LOC110522407 (gen1)


Basic Information

Item Value
gene id LOC110522407
gene name gen1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 24052548 ~ 24060425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600783.2
TTGGATTCGGAAGCGTGTTTGTTTTAGCAGGAAGTGCTGCTAAATTAAATAACTAAGTGATCAACAAAGTGCATTTCTTGTGAAATACTGCACATTTATcatttttttactttttacttATAAAAAGGTAAACAACGATTTGCGCGATGGGTGTGCACGACCTGTGGTCCATTCTGGGACCGGTTCGGGAGTCGGTGCCGTTGTACAGCCTCACCGGAAAGACCCTGGCCGTGGACCTTAGCCTGTGGGTCTGCGAGGCCCAGCACGTCCAAGCAATGATGGGGAAAGTCACCAAACCTCACCTCCGGAATCTGTTTTTCAGAGTTTCCTCTCTCACACTGATGGGGGTAAAGCTAGTTTTTGTCATGGAGGGAGAGGCCCCCAAACTCAAAGCAGAGACCATGAGCAAGAGGACAGACATGAGATTTGGGGGGTTCGACAAGTCAGCCCCTAAAAAACAAACTACAAAGACCACCAACAGGGGTCGCTTCAATGCTGTGCTGAGAGAGtGTGCAGAGATGCTGGACTGTCTGGGTGTCCCCTGGGTGACAGCGGCAGGGGAGGCCGAGGCCATGTGTGCCTTTCTGGATGCCCAGGGCCTGGTGGACGGCTGCATCACCAACGATGGGGACGCTTTTCTCTACGGAGCACAGACCGTCTACAGAAActtcaacatgaacaccaagGATCCACAGGTGGATTGTTACAGGACTTCTAGGGTGGAGACAGAGCTGCAGCTAGCCAGGGAGACACTCGTGGGTCTGGCCATCCTTCTGGGCTGTGATTATATTCCTAAGGGTATACCAGGAGTTGGGAAAGAGCAAGCTCTAAAACTCATACAGACATTGAAAGGGCAAACACTTTTACAAAGATTCAgccagtggagggaggagggcgtGGTTGCGCCAGAGTGGGTCCTAAAGAAGGTCCCTCACTGCCATTTGTGTTGCCATCCTGggTCAGCCAAGGCTCACGAGCGCAGTGGCTGTGTGTTGTGTGACAGCAAGCACTTCTGTGAGCCTCAAGACTATGACTACCAGTGTCCTTGTCACTGGCACTGCTGTGAGCAGACACGACAGGCCTCTTCAACAGATGCCAGCATCAGGAAGAAAACACTGGCAAGTGATAAATTCCCTTTTACAGAGATCATAAATGAATTTCTGGTAGACAAAGACAAGCCTGTCCACAATTTCAAATGGAGGAAACCGAACATGCTATTAATgcagAACTTTGCGTACAATAAGATGTTGTGGCCTAAACACTATACCAGTGAGAAGGTTCTGGTCCTGATGACGTACACTGAGCTGATGAACAGAAAACATGGAAGAGCGACGTCGTCTCTGATAAAACCTCTACGTATATGGAAGCCAAGAGTAAGGAATGCAATCGCCAGCTTTGAAATCATCTGGAGTAAGCCAGATCACTATGTGTTTTCTGAGGACCACCCTGAGGACAGTCAGGACGAGGTGAGGACGGTGGAGGAAGAGGCTCTGTTCCGCCTGGCCTACCCACATGTGGTGGAGCTGTACCTCAGGGAGAAGGCTGAGAACAAGACCAAGAAGAAGAAACCAAAGGGTAAGAAAGACAAGCCTTTGGATCACTGTGATGTTTCTGACCTCCTGGCCAAGATGTCTTTGCACAGTTCCATTGCTGACAACAACACCCAACAACCCTCTGCCGTGGCAGCAGCACTGACCATTACAACAAGTAACAACTCAGTGTGGGTCCTGGAGGGTCCAGAGTCAGAGTCTCCAAAAAGGCATCTGGATCCTGGTAAAGACCATCCCCGCTTAGAAGTAAGTCTTGGAGCTCAGatacaggaagtgatgtcacctCCGTCTTTCACTTCCTCTGGGAAGATTCCAGAAGCAGCGGCCTCCTCTCCGTCTGTTTCCGTGGTGATGGATGCTCTTCACCTGAGTGACATCGACTGGGAGTCTCAGTCATTCACGTCCTCCCCGCCCCCACAGGCTGTTGGCGCTCGCACTGCCACTGACCCCAAGTCACTCCAAACCACAAATGATAGTGTCGAAGAAAGGATCACAAAACTGGGCCCCTCTACTGATCTCAGAGCAGCAGAGGCCGTACCAGGGCCATGTTATGCAGAGTGTTCGCTGAGGGACAGGGTCCTAATGAGAAACACATGCAAGTCTGTGAACATGGCGGACAATGATGACGTCACCATCATACACGTAAACTCCCAGTCAGCAGCACCCCCTGATTTAATTGATTCTAACAACAGTGGCCCCAAGCCAATGGCACTGATACCCATTAAAAGCAGCAATGCTTCCAAGCCATCAGAACAGCCGCTGGTGTGTGGCAAGAAAGCCACACTTGTTGATAAGGACCAGAGCATTGCATTGCTCCATAAGCCTCAACCTGCTCATCACATCTCAAAACCTATCTCATTGAACGCAACACAAACAAGCCCAGTCACAGCAACACAAACAGGCCCAGTAACAGCAACACAAACACAAGGGGCTAAACAACATGGTGCCGGTGAACCAAAGCCTCCACAGAAGTACAGATTCGTAAAGAAGGCCATATCATCTTCTTCCGCTCTGCCACAAAGGAGCCACTCTGAACCTAGCGACACACAGCCTGGTCGGGATGACAGGAACATGAAGTCACATCAAGAAACCAAGAAGAGTGTGTGTGCCAGAGTGTGTTCATCGAGTGAGGACAGTGACACAGTGAACCAGTGTCGGGGAGGAGGGCAGAGCAGGGCCAAAGTCAAACCCAAAAGCAGGCACAGGTGCCAATACCTCACAGACTACTCACTGAAACCCACCTCCAAACCCAGCACCTCTACAAAGGCAGTCTGGGACACAGTGACAGCCCAGCCCCTCAGGCCTAGAGCTGTGTCTGCCAGTATGGGTGAACAACCAATACGAGGCAGCTCTGTGTCTACCATAGGGAAGTGCCAGGATGTTCATCCAATTAGAGTTGATGATGACATTGTGTTCATTCCAAGCCCCGTTTCCCCAGTGACTATGTCTGATGGTGATGACTCAGTGATTTGCAGCAAGAGCCCACTGCCATTGGCAGAGAGGGTGAAGCTGAAGTTCCTGAAATGAGTGATGTGATATACCAGAGGTGTTAGGACAGAAAAAAAGAAATACTATTTCCTAATATTATTATTTAATAGTATTCTATCACAACTTTATCTAGTTTGTTCAGTAAGTGTATTTTTAACCTTTGATATTGGCCTTTCCTTTTGTCTTCTATGTACACAATTGTAGTTTTCTGCTGCTATATCTTTAATGGACTTACAGTAGGAAATGGAGAAATATTTTACTCATGCAGTTAGGGAGAGGGCATGTAGAAATGCTCATGTTCTGtgataatgttttatttttataaaactCTATACTTTTCAA
>XM_036975980.1
TTGGATTCGGAAGCGTGTTTGTTTTAGCAGGAAGTGCTGCTAAATTAAATAACTAAGTGATCAACAAAGTGCATTTCTTGTGAAATACTGCACATTTATcatttttttactttttacttATAAAAAGGTAAACAACGATTTGCGCGATGGGTGTGCACGACCTGTGGTCCATTCTGGGACCGGTTCGGGAGTCGGTGCCGTTGTACAGCCTCACCGGAAAGACCCTGGCCGTGGACCTTAGCCTGTGGGTCTGCGAGGCCCAGCACGTCCAAGCAATGATGGGGAAAGTCACCAAACCTCACCTCCGAGTTTCCTCTCTCACACTGATGGGGGTAAAGCTAGTTTTTGTCATGGAGGGAGAGGCCCCCAAACTCAAAGCAGAGACCATGAGCAAGAGGACAGACATGAGATTTGGGGGGTTCGACAAGTCAGCCCCTAAAAAACAAACTACAAAGACCACCAACAGGGGTCGCTTCAATGCTGTGCTGAGAGAGtGTGCAGAGATGCTGGACTGTCTGGGTGTCCCCTGGGTGACAGCGGCAGGGGAGGCCGAGGCCATGTGTGCCTTTCTGGATGCCCAGGGCCTGGTGGACGGCTGCATCACCAACGATGGGGACGCTTTTCTCTACGGAGCACAGACCGTCTACAGAAActtcaacatgaacaccaagGATCCACAGGTGGATTGTTACAGGACTTCTAGGGTGGAGACAGAGCTGCAGCTAGCCAGGGAGACACTCGTGGGTCTGGCCATCCTTCTGGGCTGTGATTATATTCCTAAGGGTATACCAGGAGTTGGGAAAGAGCAAGCTCTAAAACTCATACAGACATTGAAAGGGCAAACACTTTTACAAAGATTCAgccagtggagggaggagggcgtGGTTGCGCCAGAGTGGGTCCTAAAGAAGGTCCCTCACTGCCATTTGTGTTGCCATCCTGggTCAGCCAAGGCTCACGAGCGCAGTGGCTGTGTGTTGTGTGACAGCAAGCACTTCTGTGAGCCTCAAGACTATGACTACCAGTGTCCTTGTCACTGGCACTGCTGTGAGCAGACACGACAGGCCTCTTCAACAGATGCCAGCATCAGGAAGAAAACACTGGCAAGTGATAAATTCCCTTTTACAGAGATCATAAATGAATTTCTGGTAGACAAAGACAAGCCTGTCCACAATTTCAAATGGAGGAAACCGAACATGCTATTAATgcagAACTTTGCGTACAATAAGATGTTGTGGCCTAAACACTATACCAGTGAGAAGGTTCTGGTCCTGATGACGTACACTGAGCTGATGAACAGAAAACATGGAAGAGCGACGTCGTCTCTGATAAAACCTCTACGTATATGGAAGCCAAGAGTAAGGAATGCAATCGCCAGCTTTGAAATCATCTGGAGTAAGCCAGATCACTATGTGTTTTCTGAGGACCACCCTGAGGACAGTCAGGACGAGGTGAGGACGGTGGAGGAAGAGGCTCTGTTCCGCCTGGCCTACCCACATGTGGTGGAGCTGTACCTCAGGGAGAAGGCTGAGAACAAGACCAAGAAGAAGAAACCAAAGGGTAAGAAAGACAAGCCTTTGGATCACTGTGATGTTTCTGACCTCCTGGCCAAGATGTCTTTGCACAGTTCCATTGCTGACAACAACACCCAACAACCCTCTGCCGTGGCAGCAGCACTGACCATTACAACAAGTAACAACTCAGTGTGGGTCCTGGAGGGTCCAGAGTCAGAGTCTCCAAAAAGGCATCTGGATCCTGGTAAAGACCATCCCCGCTTAGAAGTAAGTCTTGGAGCTCAGatacaggaagtgatgtcacctCCGTCTTTCACTTCCTCTGGGAAGATTCCAGAAGCAGCGGCCTCCTCTCCGTCTGTTTCCGTGGTGATGGATGCTCTTCACCTGAGTGACATCGACTGGGAGTCTCAGTCATTCACGTCCTCCCCGCCCCCACAGGCTGTTGGCGCTCGCACTGCCACTGACCCCAAGTCACTCCAAACCACAAATGATAGTGTCGAAGAAAGGATCACAAAACTGGGCCCCTCTACTGATCTCAGAGCAGCAGAGGCCGTACCAGGGCCATGTTATGCAGAGTGTTCGCTGAGGGACAGGGTCCTAATGAGAAACACATGCAAGTCTGTGAACATGGCGGACAATGATGACGTCACCATCATACACGTAAACTCCCAGTCAGCAGCACCCCCTGATTTAATTGATTCTAACAACAGTGGCCCCAAGCCAATGGCACTGATACCCATTAAAAGCAGCAATGCTTCCAAGCCATCAGAACAGCCGCTGGTGTGTGGCAAGAAAGCCACACTTGTTGATAAGGACCAGAGCATTGCATTGCTCCATAAGCCTCAACCTGCTCATCACATCTCAAAACCTATCTCATTGAACGCAACACAAACAAGCCCAGTCACAGCAACACAAACAGGCCCAGTAACAGCAACACAAACACAAGGGGCTAAACAACATGGTGCCGGTGAACCAAAGCCTCCACAGAAGTACAGATTCGTAAAGAAGGCCATATCATCTTCTTCCGCTCTGCCACAAAGGAGCCACTCTGAACCTAGCGACACACAGCCTGGTCGGGATGACAGGAACATGAAGTCACATCAAGAAACCAAGAAGAGTGTGTGTGCCAGAGTGTGTTCATCGAGTGAGGACAGTGACACAGTGAACCAGTGTCGGGGAGGAGGGCAGAGCAGGGCCAAAGTCAAACCCAAAAGCAGGCACAGGTGCCAATACCTCACAGACTACTCACTGAAACCCACCTCCAAACCCAGCACCTCTACAAAGGCAGTCTGGGACACAGTGACAGCCCAGCCCCTCAGGCCTAGAGCTGTGTCTGCCAGTATGGGTGAACAACCAATACGAGGCAGCTCTGTGTCTACCATAGGGAAGTGCCAGGATGTTCATCCAATTAGAGTTGATGATGACATTGTGTTCATTCCAAGCCCCGTTTCCCCAGTGACTATGTCTGATGGTGATGACTCAGTGATTTGCAGCAAGAGCCCACTGCCATTGGCAGAGAGGGTGAAGCTGAAGTTCCTGAAATGAGTGATGTGATATACCAGAGGTGTTAGGACAGAAAAAAAGAAATACTATTTCCTAATATTATTATTTAATAGTATTCTATCACAACTTTATCTAGTTTGTTCAGTAAGTGTATTTTTAACCTTTGATATTGGCCTTTCCTTTTGTCTTCTATGTACACAATTGTAGTTTTCTGCTGCTATATCTTTAATGGACTTACAGTAGGAAATGGAGAAATATTTTACTCATGCAGTTAGGGAGAGGGCATGTAGAAATGCTCATGTTCTGtgataatgttttatttttataaaactCTATACTTTTCAA

Function

symbol description
gen1 Enables several functions, including endodeoxyribonuclease activity; magnesium ion binding activity; and protein homodimerization activity. Involved in DNA metabolic process and regulation of cell cycle process. Located in centrosome.

NR:

description
flap endonuclease GEN homolog 1

GO: NA

KEGG:

id description
K15338 GEN1, GEN; flap endonuclease GEN

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600783.2 False 3380 mRNA 0.49 13 24052548 24060425
XM_036975980.1 True 3365 mRNA 0.49 13 24052548 24060425
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522408 LOC106608020 coding upstream 18274 24024934 ~ 24034274 (+)
acp1 NA coding upstream 172961 23866740 ~ 23879587 (+)
si:ch211-225h24.2 tdrp coding upstream 251041 23778611 ~ 23801507 (+)
LOC110522416 NA coding upstream 281544 23768487 ~ 23772991 (+)
ccdc167 ccdc167 coding upstream 304155 23745535 ~ 23748393 (+)
msgn1 LOC106608038 coding downstream 1252 24061677 ~ 24063116 (+)
si:ch211-51e12.7 NA coding downstream 3406 24063831 ~ 24072963 (+)
tulp4a tulp4 coding downstream 22430 24082855 ~ 24138549 (+)
tmem181 tmem181 coding downstream 78534 24138959 ~ 24148337 (+)
syne1a syne1 coding downstream 123540 24183965 ~ 24396666 (+)
G334325 NA non-coding upstream 475 24051711 ~ 24052073 (+)
G334313 cssa06h1orf115 non-coding upstream 28057 24018489 ~ 24024491 (+)
G334312 NA non-coding upstream 35344 24016737 ~ 24017204 (+)
G334311 NA non-coding upstream 38663 24013668 ~ 24013885 (+)
G334162 NA non-coding upstream 121292 23930888 ~ 23931256 (+)
G334369 serac1 non-coding downstream 95296 24155721 ~ 24159410 (+)
G334375 NA non-coding downstream 106026 24166451 ~ 24183626 (+)
G334414 NA non-coding downstream 195085 24255510 ~ 24256286 (+)
G334116 NA other upstream 218126 23833821 ~ 23837875 (+)
G333079 smyd2 other upstream 1094352 22955879 ~ 22958196 (+)
G332507 NA other upstream 1459186 22592930 ~ 22593362 (+)
G332458 LOC106584613 other upstream 1553552 22498500 ~ 22498996 (+)
G334475 NA other downstream 357157 24417582 ~ 24418946 (+)
G334473 armt1 other downstream 359689 24420114 ~ 24422731 (+)
LOC110522376 sash1 other downstream 1990628 25761890 ~ 26057813 (+)
G336464 NA other downstream 2832710 26892229 ~ 26894837 (+)

Expression

LOC110522407(gen1) Expression in all Baseline Samples

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LOC110522407(gen1) Expression in each Bioproject

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LOC110522407(gen1) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 60.
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Co-expression Network