Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964454 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 25028611 ~ 25060710 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: scavenger receptor cysteine-rich type 1 protein M160-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005051501.1 | True | 3318 | mRNA | 0.43 | 4 | 25028611 | 25060710 |
25,008,000
25,012,000
25,016,000
25,020,000
25,024,000
25,028,000
25,032,000
25,036,000
25,040,000
25,044,000
25,048,000
25,052,000
25,056,000
25,060,000
25,064,000
25,068,000
25,072,000
25,076,000
NC_048568.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522390 | NA | coding | downstream | 384247 | 24639723 ~ 24644364 (-) |
| LOC110522391 | LOC106608006 | coding | downstream | 399345 | 24624615 ~ 24629266 (-) |
| mthfd1l | mthfd1l | coding | downstream | 423909 | 24518361 ~ 24604702 (-) |
| akap12b | akap12 | coding | downstream | 519736 | 24444436 ~ 24508875 (-) |
| LOC118964453 | NA | coding | downstream | 594239 | 24433532 ~ 24434372 (-) |
| epm2a | epm2a | coding | upstream | 25201 | 25085911 ~ 25105555 (-) |
| LOC110522383 | LOC106607997 | coding | upstream | 74875 | 25135585 ~ 25140437 (-) |
| LOC110522375 | LOC106607984 | coding | upstream | 1125696 | 26186406 ~ 26211003 (-) |
| cdc40 | cdc40 | coding | upstream | 1221898 | 26282608 ~ 26327662 (-) |
| LOC110522371 | gpr6 | coding | upstream | 1421878 | 26482588 ~ 26484715 (-) |
| G335365 | NA | non-coding | downstream | 2478 | 25007009 ~ 25026133 (-) |
| G335410 | NA | non-coding | downstream | 6320 | 25021452 ~ 25022291 (-) |
| G335364 | NA | non-coding | downstream | 24715 | 25003479 ~ 25003896 (-) |
| G335398 | NA | non-coding | downstream | 26996 | 25001386 ~ 25001615 (-) |
| G335397 | NA | non-coding | downstream | 27434 | 25000945 ~ 25001177 (-) |
| G336939 | LOC106607995 | non-coding | upstream | 135415 | 25196125 ~ 25198230 (-) |
| G336977 | NA | non-coding | upstream | 198416 | 25259126 ~ 25259333 (-) |
| G337093 | NA | non-coding | upstream | 370209 | 25430919 ~ 25431315 (-) |
| G337157 | yo84 | non-coding | upstream | 469780 | 25530490 ~ 25530847 (-) |
| G337161 | NA | non-coding | upstream | 473171 | 25533881 ~ 25534162 (-) |
| G334789 | NA | other | downstream | 1004108 | 24018472 ~ 24024503 (-) |
| G334252 | NA | other | downstream | 1089242 | 23938272 ~ 23939369 (-) |
| G333842 | LOC100136772 | other | downstream | 1640041 | 23387061 ~ 23388570 (-) |
| LOC110522343 | LOC106607932 | other | downstream | 2364704 | 22659885 ~ 22674233 (-) |
| G332867 | pol3 | other | downstream | 2530882 | 22496923 ~ 22497729 (-) |
| G337147 | LOC106607991 | other | upstream | 449800 | 25510510 ~ 25512780 (-) |
| G337207 | NA | other | upstream | 573007 | 25633717 ~ 25634063 (-) |
| G337894 | NA | other | upstream | 1706664 | 26767374 ~ 26770165 (-) |
| LOC110522434 | fkbp1b | other | upstream | 2669698 | 27730407 ~ 27757242 (-) |
| G339008 | NA | other | upstream | 2861739 | 27922449 ~ 27923104 (-) |
