epm2a (epm2a)


Basic Information

Item Value
gene id epm2a
gene name epm2a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 25085911 ~ 25105555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976000.1
AGCTGTTTTTTTTTCCAACCTAGGTTTATTTTTAGGGCAAATGAATATGATAGTCTGCCCAAAATTCAACGCAGTGGTAATGTCAAGTAAAGATAGCCTACACGTTGTAAACTATTGTACGCAATGGCATTGCTGTGCAGCCTTTATCGTAAAGGGAGTGAGCTATGAAAGCGCCGCGATTTAGCCTAGTAATTTACCAGTAGGCTACTAAACCGCGACAATATTGTATCTCGTAGTGACCTTTTAGTTTAGGGCGATGTTATACAGATTCGGCGTCATTCTCACTCCGGAGTGCCCGGACGTAGAGGTGTTTGTGTTAGGGTCCCGTCCGGAGATGGGTCACTGGGACCCAAACAATGCAGTTCTGATGAAACGGACGCAGGTGGTTTTGTCCATGCGCGAACCTTGCCTCTGGATCGCCGACGTGCATCTGGCAGAACCGTGCCAAGAGAGCCTGTGGTTGAAGTTCATCAAACGAGTGGGGGGCAATTTCATCTGGGAAGGCAACGGTTCCCACCACGACAGATGTTGTGTGTACGACCAGAGCAACCTGGTGGACGGGGTGTACTGCCACCCTATTGGCCACTGGATCGAGGAGACAGGTCATACGGACGAGATGAAGCACACGACTGACTTCTACTTTGGCGTGGCCGGCCAGCAGGCCATGCATTTCAACAGAGTCCTGCCCCGGGTGTTTCTGGGTAGCTGCCCTCGCCAGGTGGAGCATGTGACCCTCAAGCTGAAGGAAGAGCTGGGTGTTACCGCAGTAATGAACTTTCAGACGGAGGGGGATATGGTCAACAACTCGTCCGGCTGCCGCCGCGACCCCGGGCAAGAAATGACCCCAGAGACCATGATGCACCTGTACAGGGACTGTGGCCTGGCGTACGTGTGGATCCCAACACCAGACATGAGCACTGAAGGCCGGACTAGGGTGCTTCCCCAGGCTGTCTTCCTGCTGCACGGTCTCCTGGAGAACGGTCACACGGTCTACGTTCACTGTAACGCTGGCGTTGGGCGCTCCACCGCAGCCGTGTGCGGTCTTCTCATGTACGTCCTGGGCTGGAGCAAGAGGAAGGTGCAGTACTTTGTCACAGCCAGGAGGGCGGCGGTGTACATCGACGAGGAGGCACTGGTAAATGCCCAGGAGGACTTCATTCAGAAGTTTGGACGCCTGCGCACCTCCGTTTGCTACCCGCAAACATGAGGGTAGAACCCCCTGTGGTGTGGAGTGTTGCTGCCTAGCTGTGCATGGCTGTCTGCCAGTGTGCCATAGAGACAGTGGAGAAAATATATTTAGTTGAAGTACTGCATTAATCATCTGTACACCCGGCATGATTTGTGCGGAAGATGCCAGAAGGTGAAATAACTTAAGTGAATATCAACCTCTGCACTGATTTGATCCAATGCAAATGACCAGTTTAGTTGAGTGGCTGTCATAAACTGGTCAATGACGAGGTACCCGGAGGGAATTCTACTAGCTGCTGCCAACAGGTTCAGAAAGCTATTAATACTTATCATTGTGATGTGTTTGTTTTGTAgctttggggttgtttttcatttatttattgaaGGTATTATTTCTAATTGCGTCGTGAAAAGGCAGTTGAGTCCAGAACATTGTCTGTAGATTTCTGTTGTTATCTGCAGGGGTTTGAGAAGGACCTTTTGTTCAACCCTTGTTTTTATTCATCAATGAACAGAGCTGACATTTCAAAAAGGCACCTTGAAGCTGTTGTGGCGACTGCAGAGCTGCTAATGGAATACTTATGACTGACTGAGACATGTAGCTCCTGCAGGATCCAGCCTGAGTTGCGGATCCAGACAACAGTAAATATAAACTGGGTCAGGCACAAAGTCAGTGGCAAGGTGAGAATTTCACTGTCATGAGGGTGAGTTTAGGAAAGAAGAGAAATATAAACTGCTCCTCTTTTGCTCTCAGCCTATCTTCTCTCCACATTATACTCCTCGGTAAGAAGGGATTACTGCTGTGTCACCTCCGCTACCTTCTGAGAGAAATTGTGTCTTTTCATAGtcaatggtggctccctgcaaATACAAATGATGGTTGCTTTTGTTATGTAGAAGCCTTAATGCTGCTGCAAATAGGAAAATGTCATTTCctgcaaaataaaaataaataaaaagcca

Function

symbol description
epm2a Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in Lafora disease and progressive myoclonus epilepsy. Orthologous to human EPM2A (EPM2A glucan phosphatase, laforin).

NR:

description
laforin

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976000.1 True 2151 mRNA 0.49 4 25085911 25105555
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118964454 NA coding downstream 25201 25028611 ~ 25060710 (-)
LOC110522390 NA coding downstream 441547 24639723 ~ 24644364 (-)
LOC110522391 LOC106608006 coding downstream 456645 24624615 ~ 24629266 (-)
mthfd1l mthfd1l coding downstream 481209 24518361 ~ 24604702 (-)
akap12b akap12 coding downstream 577036 24444436 ~ 24508875 (-)
LOC110522383 LOC106607997 coding upstream 30030 25135585 ~ 25140437 (-)
LOC110522375 LOC106607984 coding upstream 1080851 26186406 ~ 26211003 (-)
cdc40 cdc40 coding upstream 1177053 26282608 ~ 26327662 (-)
LOC110522371 gpr6 coding upstream 1377033 26482588 ~ 26484715 (-)
fig4a fig4 coding upstream 1392959 26498514 ~ 26603349 (-)
G335434 NA non-coding downstream 25862 25058439 ~ 25060049 (-)
G335432 NA non-coding downstream 34294 25051317 ~ 25051617 (-)
G335424 NA non-coding downstream 40758 25044893 ~ 25045153 (-)
G335419 NA non-coding downstream 48867 25036603 ~ 25037044 (-)
G335418 NA non-coding downstream 50321 25035215 ~ 25035590 (-)
G336939 LOC106607995 non-coding upstream 90570 25196125 ~ 25198230 (-)
G336977 NA non-coding upstream 153571 25259126 ~ 25259333 (-)
G337093 NA non-coding upstream 325364 25430919 ~ 25431315 (-)
G337157 yo84 non-coding upstream 424935 25530490 ~ 25530847 (-)
G337161 NA non-coding upstream 428326 25533881 ~ 25534162 (-)
G334789 NA other downstream 1061408 24018472 ~ 24024503 (-)
G334252 NA other downstream 1146542 23938272 ~ 23939369 (-)
G333842 LOC100136772 other downstream 1697341 23387061 ~ 23388570 (-)
LOC110522343 LOC106607932 other downstream 2422004 22659885 ~ 22674233 (-)
G332867 pol3 other downstream 2588182 22496923 ~ 22497729 (-)
G337147 LOC106607991 other upstream 404955 25510510 ~ 25512780 (-)
G337207 NA other upstream 528162 25633717 ~ 25634063 (-)
G337894 NA other upstream 1661819 26767374 ~ 26770165 (-)
LOC110522434 fkbp1b other upstream 2624853 27730407 ~ 27757242 (-)
G339008 NA other upstream 2816894 27922449 ~ 27923104 (-)

Expression

epm2a(epm2a) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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epm2a(epm2a) Expression in each Bioproject

Bar chart with 21 bars.
epm2a(epm2a) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
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Co-expression Network