XLOC_022450 (ccdc187)


Basic Information

Item Value
gene id XLOC_022450
gene name ccdc187
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30013240 ~ 30045733 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044276
TGCTGGTGGAGGGAGGGAGCAGAAGTTTGTCCGCTCAGGCTTACCATCCCTGTGGAAGTTTCATGCCATTGTTTCGTTGTCTTTCTGGTCGGAAACTTTGAAACTACGTAATTATAGTTCGCGTTTGGTTCAGAGACACTGCCAAATTCAGCTATGAGCTTATGAGAAGTGAGGCTTTTTGGTCGAGTAGCCCTAGTATGCAACATGTAGTTGAAGATACAAAGCGCATTTGTAGAGAAGAAAAGAGCTCAGAGACCAGGTGTTGCTGAATGCCATGAGCTGTTGAGCAGTGATGGCAGAGCTGGAGGTGGATCAATCCAACCTGCCCAGAGTCCAGGAGGTgtgccagtgttttgctgtactGGAGGATGGAGCTTTAGCTCATAATCTGCAAGAGCAGGAAATCGAGCAGTACTACAGCTCAAATGTGGAGAGGAGTCAGCTGGTGCAGAGGGACATCAGAGTAGCCAAGAGACTGCAGGATGAGGAGCAGCAGAGAGTGCAGACGCCACAGCATCAGACCACTCGTCAGCTGGAGGAACGGGATTCCGAATATGCACGCATGATTCAGGAGGAGATCCAGCGGTGTGCTGAGGAGGCTCGAAGGAGGGAAGTTGAGGACGAGgaaatCGCTAAAAGGATACAGGAAGAAGAACTTTGTTTGAGGCACAGGAGCAGTTACCAAAATAAAGATGTTAGAGGGCCTGCTTTTAGGAGTGGAACAACTGCTCTTGACTTGGTAGAACTGGAGCAGGTGTTAAGGGATGAGGAGCTGGCTCGCAGACTTCAGGAAGAGGAGGAGAGATTGGTCGCAGAGGCTCAGCATCTTTCCTCACCTCTCACCTCTAGAGATTGTCCGGTTGGAGACTTTAGAGCGGCACAGGTTGCTCAGGATGAGGAAATTGCACGTTTCATGCAGAAACAGGAGATAAAAGTTAAGCGGAGTTCCCGTGAGTTGGAATCTGCTGGGCAGGAATGCAGGGAGATTGAAAGAAGAGCAACATGTGACAGACAGAGGCGGAGACTGGATTCTGAAGGTCTTCGATCCCCGGTTGATGACTTCAGCCCAGACCATCCAGGTCAAATGTCTACACCAGTGCAAACACAAGCCATTAAGAATATCGCAGAAGAGCTTGACCCCACATTTCAAAGAAAAAACTCAGCCGATGATGGAAAAATCAATGGTCAAACTTCCCCACAGGCAGGCTCGTACAACCCATTGGATGAACCAACATTTGTTCCACCCACAAAACGACAGAGTGAAAAACTCGGACGAGTAAAGaccaaagagaaaaaagaaaatgtgaaaCAGAAAGAGAATTGCAAGCAGCAGTGATGCTGGACATGTGAAATGACCTGCATTAAATAAGTCATATATGCATGATATGCATGCTTGTCCCAACACTTGGGGATTTTCCAGTCTTCTGCTTTCACCAGTACTTGTTGGGATTCATTTGTAATAAACAAACTTGCAAAACAGGGGCACTCCAGATAATGCTGCTGTTACTAGCCAACATCTGTCATGCTGTATTTAGGTTTTCTGTTTCATTTTTGGTTTAGCAGCTGGCTAGAATGTCACCACAAAAGGGAAAGCTCCAATCTAACAGACAGTGCTGTTCAAAAAATGCATTCCTGTATGACTGGGAATATCAGAAATTATACTACGCTGAAGAAAAAGGAAGTTGACACACATTGTTGTCCAACATCCAAGCAGGCATTCTTTTACTATGGATTGTACTTTCCTCTTCTTGTATTCCAGGAACTACTTCAGCcttaaaaaaagtgttattttcgTTTTTGTGTGTTGCCTTCAAGAACACGTGTGTTAGCttcatgctttaaaatgtttactatTCTTAATATTATTACTGATAATATTTAGTAGTTTACAAGACCTGGAGTCTTGTTTCTCTTCTTCTGCCTCCTTTGTAGTGTACATCAGCATATTTTATATGCTTTACCAGGTTAGAGGAAATGAAACATTTTGTACTGATAAGTGCCATTTTTACACGTGTTTATTAGTGTCATTACATCAGTGTAAACAATGTGTTGTCAACAATCAGACCTTTAATGCttgtataaagtaaaaaaaaaatccttgtacAGAAgattaaaaaatctatataaatccA
>TCONS_00044277
TTCGTTGTCTTTCTGGTCGGAAACTTTGAAACTACGTAATTATAGTTCGCGTTTGGTTCAGAGACACTGCCAAATTCAGCTATGAGCTTATGAGAAGTGAGGCTTTTTGGTCGAGTAGCCCTAGTATGCAACATGTAGTTGAAGATACAAAGCGCATTTGTAGAGAAGAAAAGAGCTCAGAGACCAGGTGTTGCTGAATGCCATGAGCTGTTGAGCAGTGATGGCAGAGCTGGAGGTGGATCAATCCAACCTGCCCAGAGTCCAGGAGGGCATAGAGTATGTTGGCTGCTGAACAAAACAAACCAGCTACTGGGTCTGCAGAGCCTCCGGACGTCTCAAATGAGGACAAAGAAACTGACCATTACTTgtgccagtgttttgctgtactGGAGGATGGAGCTTTAGCTCATAATCTGCAAGAGCAGGAAATCGAGCAGTACTACAGCTCAAATGTGGAGAGGAGTCAGCTGGTGCAGAGGGACATCAGAGTAGCCAAGAGACTGCAGGATGAGGAGCAGCAGAGAGTGCAGACGCCACAGCATCAGACCACTCGTCAGCTGGAGGAACGGGATTCCGAATATGCACGCATGATTCAGGAGGAGATCCAGCGGTGTGCTGAGGAGGCTCGAAGGAGGGAAGTTGAGGACGAGgaaatCGCTAAAAGGATACAGGAAGAAGAACTTTGTTTGAGGCACAGGAGCAGTTACCAAAATAAAGATGTTAGAGGGCCTGCTTTTAGGAGTGGAACAACTGCTCTTGACTTGGTAGAACTGGAGCAGGTGTTAAGGGATGAGGAGCTGGCTCGCAGACTTCAGGAAGAGGAGGAGAGATTGGTCGCAGAGGCTCAGCATCTTTCCTCACCTCTCACCTCTAGAGATTGTCCGGTTGGAGACTTTAGAGCGGCACAGGTTGCTCAGGATGAGGAAATTGCACGTTTCATGCAGAAACAGGAGATAAAAGTTAAGCGGAGTTCCCGTGAGTTGGAATCTGCTGGGCAGGAATGCAGGGAGATTGAAAGAAGAGCAACATGTGACAGACAGAGGCGGAGACTGGATTCTGAAGGTCTTCGATCCCCGGTTGATGACTTCAGCCCAGACCATCCAGGTCAAATGTCTACACCAGTGCAAACACAAGCCATTAAGAATATCGCAGAAGAGCTTGACCCCACATTTCAAAGAAAAAACTCAGCCGATGATGGAAAAATCAATGGTCAAACTTCCCCACAGGCAGGCTCGTACAACCCATTGGATGAACCAACATTTGTTCCACCCACAAAACGACAGAGTGAAAAACTCGGACGAGTAAAGaccaaa
>TCONS_00044278
TATGTAGTGCAGGTTAGCAGGTGCTTAAGCTGTCCAGAAGAGTCccttttaaagtgacatttaacacaGGCATAGAGTATGTTGGCTGCTGAACAAAACAAACCAGCTACTGGGTCTGCAGAGCCTCCGGACGTCTCAAATGAGGACAAAGAAACTGACCATTACTTgtgccagtgttttgctgtactGGAGGATGGAGCTTTAGCTCATAATCTGCAAGAGCAGGAAATCGAGCAGTACTACAGCTCAAATGTGGAGAGGAGTCAGCTGGTGCAGAGGGACATCAGAGTAGCCAAGAGACTGCAGGATGAGGAGCAGCAGAGAGTGCAGACGCCACAGCATCAGACCACTCGTCAGCTGGAGGAACGGGATTCCGAATATGCACGCATGATTCAGGAGGAGATCCAGCGGTGTGCTGAGGAGGCTCGAAGGAGGGAAGTTGAGGACGAGgaaatCGCTAAAAGGATACAGGAAGAAGAACTTTGTTTGAGGCACAGGAGCAGTTACCAAAATAAAGATGTTAGAGGGCCTGCTTTTAGGAGTGGAACAACTGCTCTTGACTTGGTAGAACTGGAGCAGGTGTTAAGGGATGAGGAGCTGGCTCGCAGACTTCAGGAAGAGGAGGAGAGATTGGTCGCAGAGGCTCAGCATCTTTCCTCACCTCTCACCTCTAGAGATTGTCCGGTTGGAGACTTTAGAGCGGCACAGGTTGCTCAGGATGAGGAAATTGCACGTTTCATGCAGAAACAGGAGATAAAAGTTAAGCGGAGTTCCCGTGAGTTGGAATCTGCTGGGCAGGAATGCAGG
>TCONS_00044279
aaagtgacatttaacacaGGTGCGCTCCCTCTACCTCCTGGCTAGACTAAAATGGATGAGACATTCAGCGAGTGaatctGCATAGAGTATGTTGGCTGCTGAACAAAACAAACCAGCTACTGGGTCTGCAGAGCCTCCGGACGTCTCAAATGAGGACAAAGAAACTGACCATTACTTgtgccagtgttttgctgtactGGAGGATGGAGCTTTAGCTCATAATCTGCAAGAGCAGGAAATCGAGCAGTACTACAGCTCAAATGTGGAGAGGAGTCAGCTGGTGCAGAGGGACATCAGAGTAGCCAAGAGACTGCAGGATGAGGAGCAGCAGAGAGTGCAGACGCCACAGCATCAGACCACTCGTCAGCTGGAGGAACGGGATTCCGAATATGCACGCATGATTCAGGAGGAGATCCAGCGGTGTGCTGAGGAGGCTCGAAGGAGGGAAGTTGAGGACGAGgaaatCGCTAAAAGGATACAGGAAGAAGAACT
>TCONS_00044280
CTTTCTGGTCGGAAACTTTGAAACTACGTAATTATAGTTCGCGTTTGGTTCAGAGACACTGCCAAATTCAGCTATGAGCTTATGAGAAGTGAGGCTTTTTGGTCGAGTAGCCCTAGTATGCAACATGTAGTTGAAGATACAAAGCGCATTTGTAGAGAAGAAAAGAGCTCAGAGACCAGGTGTTGCTGAATGCCATGAGCTGTTGAGCAGTGATGGCAGAGCTGGAGGTGGATCAATCCAACCTGCCCAGAGTCCAGGAGGACGGGGTGgtgggtcaaatcaaaggttacgatgggccaactttggcccgtgggcccTACTGTGGGCATCGCTGTTCTACATGATACATATCCATGGCTTGATTGTTGATGCCGTGTGATAGGCAGAGATAGACTAGTCATATTTCATGTTCTGCATGTTTTTGCATCTGACATCTGATTATCATTCCAGACATCTGCTGTATCTCtctgaagtcttttttttttccattggagAAAGAAAGAACCTTTCCATATGGCTTTGTTTGCTCATATTTTGTCTCTTTGGTTCGAGTCCTACATAAAGGAGCTTGACCCAGTGTTTCTTTTGAAGGGGGAAATGTTGGTGATGATTTCCCTTTCCGTTCCCATTCTGTACACAATGAGTTCATTGTTTTGCTTTTGTATCTTTATGCTTAAACAAGCTCTAGATGTTGAACAAAGACCCTATTGGACCACCATACTGCCTGCCTGTATCA

Function

symbol description
ccdc187 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule anchoring. Predicted to be located in centrosome.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070410-81 No description available

Ensembl:

ensembl_id ENSDARG00000053857

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044276 False 2132 mRNA 0.43 12 30013240 30045733
TCONS_00044277 False 1313 mRNA 0.49 13 30014084 30045661
TCONS_00044278 False 807 mRNA 0.50 9 30016847 30041115
TCONS_00044279 False 492 mRNA 0.50 6 30023168 30041065
TCONS_00044280 True 736 processed_transcript 0.44 3 30042489 30045653

Neighbor

gene id symbol gene type direction distance location
XLOC_022449 NA coding downstream 2421 30009263 ~ 30010819 (-)
XLOC_022448 CU695073.1 coding downstream 112005 29900651 ~ 29901235 (-)
XLOC_022447 slc25a33 coding downstream 134597 29861243 ~ 29878643 (-)
XLOC_022445 tmem201 coding downstream 155153 29827134 ~ 29858087 (-)
XLOC_022446 FP101914.1 coding downstream 168926 29841211 ~ 29844314 (-)
XLOC_022451 NA coding upstream 8701 30054434 ~ 30059176 (-)
XLOC_022452 camta1a coding upstream 15631 30061364 ~ 30431333 (-)
XLOC_022453 CR456642.2 coding upstream 471466 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 coding upstream 562250 30607983 ~ 30608101 (-)
XLOC_022455 thap3 coding upstream 679983 30725716 ~ 30727596 (-)
XLOC_022443 NA non-coding downstream 190675 29821201 ~ 29822565 (-)
XLOC_022440 NA non-coding downstream 306881 29674995 ~ 29706359 (-)
XLOC_022458 NA non-coding upstream 860691 30906424 ~ 30921011 (-)
XLOC_022461 NA non-coding upstream 1207567 31253300 ~ 31266621 (-)

Expression


Co-expression Network