LOC110522372 (wasf1)


Basic Information

Item Value
gene id LOC110522372
gene name wasf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 26327551 ~ 26465676 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976021.1
GGGACTAGCATTTGATTTTGTCTCATTATCTGAATCTGAATCGGTCCCGTACGAAACGAGGGACTCCACGGTGGCAGCCATCTTGGATGTTGTGAATGTCCAACCGGAAATGTCTTAAAAgTGTGGTAGCCGTGGTCTCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACAGTGCTGCCGCGGGCCATTAAGAATGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAACGTCATACGGCAGCTCAGCAGCCTcagTAAGTATGCAGAGGACCTGTTTGGGGAGCTATTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTGCAGGAGCGCGTGGACCGCCTCTCTATCAGCGTCACACAGCTAGATCCTAAAGAGGAGGAGCtatccCTCCAGGACATCACTATGAGGAAGGCGTTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGCCCGCCAGTCGCTGCCCATCCCCCTGCAAGAGACCTTTGACCTCTGCGAGCAGCCGCCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACCAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACAGAGGacaagaggaaggagaagaggaaaCAGAAGTTGCAGGACCCCCACCTGTATGATCAGGTCTATAGGTACTTAGACCTCCCAGGACAGGTTAGGGGAAACGACCGTACTCTGGAGACTGAGAAGATCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTCGGGGCGGAGCTAGCTGAGGACGACCCTGAAGAGGCCCTGAAACACAGAGAGCCTAATGGCTCCGCTCCCTACCACGACAGgtctggaGCTCCTAGTTACTTGGATGGGATGGACGGGCCATTCTCCCTAGCAGCGCTGCCCTACAGCCAGATGAATGAGCTGCTGAACCGCCCTGGGGACAGAATGTACACACGACCCCAtgaccccccaccaccaccccctatGCACCATCTGGGAGACATCAAACCCCCCTCCATGATCAGCTCCAGTTCAGGTTTTTCAGACAGCAGACCCCAATCTCCAGCACAGACTCACGGCTTCAACTCCAACACACCTCCCCCTCCGCCACCTCCCttgccccctccacctcctcccttgCCTTCCATGTCTGGTTTTGGCCCTCGGggcacccctcctcctcctattcctcctctaccCATCCAGCAGCAGCCCCCggccatcccccctcctcctgcaCCTCTCCAGATCGCCCCTGGCGTCCTCCACCCTGCCCCTCCCCCAGTGGCACCTCCCCTCCACATCTCCTCCCCAGCCCGTCTCCAGCAGGTCCTGGACAGGGGCCCGACCCCTGGCCAATCAGATGGCACCGTGCTGCCTCCTCCGCCCCCTCCCCCGCCCCTCCCAGGAGTACGGAGCTCCTCCCCCTGCCCGCCGGGCCCACCCCCCGTGCCTTCCTTCCTGTCAGGTGCCATGGCGTCCCCGCTCTCTCACTCAGGGGGGAAGAAACACTCCGCCAACCTGCCGCCCATCAGCGATGCACGCAGTGTCCTATTGGAGGCCATCCGCAAAGgtATCCAGCTCCGGAAGGTGGAGGAGCAAAGAGAGCAGGAGGCAGCCAAACACGAGCGTGTTGGGAACGACGTGGCCACCATCCTGTCTCGACGCATTGCCGTCGAGTACTCCGACTCAGAGGACGAGTCCGAGTTCGACGAGGGAGACTGGATGGAGTgaatgagatggagggagaggaaaagaaaagagagggggacaaAAGGCAGAACTGTCACCCAACTGTACCCCCTTTAGAGATGTCAGAATCCATCCTTACAACCACTATCCTCTGTCAGTCCTGTTTTACCCCCTCACCTGTCatcctctacacctctctctctctcgccctcttgctctctctccccctctttctcactccccattctttctatcctctctccccctatttttcctccatctctctctttttctctctctacacctccct
>XM_036976022.1
TTGGCTCTCAAACAATAGAAAGTGGTATGTACCATCATGGTCTCTACGATAGGTACATTTCCCTACGAAGTCAAAGATGGTCATTTCTACTTTGCATTTATAAAACACAGTTTCTTCGCGTGTCGATCAATATATGTGGATGAATTCATCTGAAAATCTGCCGTCAACTCAACTTCGCCCGTTGTACTGTCCGTTGCGTTAGATTGTGCCCCCGGGATCCCTTTTTGAAGGGGAATTGTGCCTTGATCCTTCGCTGCTACCTTTCTAACGGGATTCATTTTGCCCCGGCTATATGATAACCACAGCATGGAATGAGGCTGGATATTTGAATTGATTGAAACAGCGAATTGCACTGTACTGCAGTAGAGATGACAAGAACATAGGAGGAATTGAACAAACATTTAAGgTGTGGTAGCCGTGGTCTCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACAGTGCTGCCGCGGGCCATTAAGAATGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAACGTCATACGGCAGCTCAGCAGCCTcagTAAGTATGCAGAGGACCTGTTTGGGGAGCTATTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTGCAGGAGCGCGTGGACCGCCTCTCTATCAGCGTCACACAGCTAGATCCTAAAGAGGAGGAGCtatccCTCCAGGACATCACTATGAGGAAGGCGTTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGCCCGCCAGTCGCTGCCCATCCCCCTGCAAGAGACCTTTGACCTCTGCGAGCAGCCGCCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACCAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACAGAGGacaagaggaaggagaagaggaaaCAGAAGTTGCAGGACCCCCACCTGTATGATCAGGTCTATAGGTACTTAGACCTCCCAGGACAGGTTAGGGGAAACGACCGTACTCTGGAGACTGAGAAGATCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTCGGGGCGGAGCTAGCTGAGGACGACCCTGAAGAGGCCCTGAAACACAGAGAGCCTAATGGCTCCGCTCCCTACCACGACAGaGCTCCTAGTTACTTGGATGGGATGGACGGGCCATTCTCCCTAGCAGCGCTGCCCTACAGCCAGATGAATGAGCTGCTGAACCGCCCTGGGGACAGAATGTACACACGACCCCAtgaccccccaccaccaccccctatGCACCATCTGGGAGACATCAAACCCCCCTCCATGATCAGCTCCAGTTCAGGTTTTTCAGACAGCAGACCCCAATCTCCAGCACAGACTCACGGCTTCAACTCCAACACACCTCCCCCTCCGCCACCTCCCttgccccctccacctcctcccttgCCTTCCATGTCTGGTTTTGGCCCTCGGggcacccctcctcctcctattcctcctctaccCATCCAGCAGCAGCCCCCggccatcccccctcctcctgcaCCTCTCCAGATCGCCCCTGGCGTCCTCCACCCTGCCCCTCCCCCAGTGGCACCTCCCCTCCACATCTCCTCCCCAGCCCGTCTCCAGCAGGTCCTGGACAGGGGCCCGACCCCTGGCCAATCAGATGGCACCGTGCTGCCTCCTCCGCCCCCTCCCCCGCCCCTCCCAGGAGTACGGAGCTCCTCCCCCTGCCCGCCGGGCCCACCCCCCGTGCCTTCCTTCCTGTCAGGTGCCATGGCGTCCCCGCTCTCTCACTCAGGGGGGAAGAAACACTCCGCCAACCTGCCGCCCATCAGCGATGCACGCAGTGTCCTATTGGAGGCCATCCGCAAAGgtATCCAGCTCCGGAAGGTGGAGGAGCAAAGAGAGCAGGAGGCAGCCAAACACGAGCGTGTTGGGAACGACGTGGCCACCATCCTGTCTCGACGCATTGCCGTCGAGTACTCCGACTCAGAGGACGAGTCCGAGTTCGACGAGGGAGACTGGATGGAGTgaatgagatggagggagaggaaaagaaaagagagggggacaaAAGGCAGAACTGTCACCCAACTGTACCCCCTTTAGAGATGTCAGAATCCATCCTTACAACCACTATCCTCTGTCAGTCCTGTTTTACCCCCTCACCTGTCatcctctacacctctctctctctcgccctcttgctctctctccccctctttctcactccccattctttctatcctctctccccctatttttcctccatctctctctttttctctctctacacctccct
>XM_036976019.1
TGGCTCTCAAACAATAGAAAGTGGTATGTACCATCATGGTCTCTACGATAGGTACATTTCCCTACGAAGTCAAAGATGGTCATTTCTACTTTGCATTTATAAAACACAGTTTCTTCGCGTGTCGATCAATATATGTGGATGAATTCATCTGAAAATCTGCCGTCAACTCAACTTCGCCCGTTGTACTGTCCGTTGCGTTAGATTGTGCCCCCGGGATCCCTTTTTGAAGGGGAATTGTGCCTTGATCCTTCGCTGCTACCTTTCTAACGGGATTCATTTTGCCCCGGCTATATGATAACCACAGCATGGAATGAGGCTGGATATTTGAATTGATTGAAACAGCGAATTGCACTGTACTGCAGTAGAGATGACAAGAACATAGGAGGAATTGAACAAACATTTAAGgTGTGGTAGCCGTGGTCTCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACAGTGCTGCCGCGGGCCATTAAGAATGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAACGTCATACGGCAGCTCAGCAGCCTcagTAAGTATGCAGAGGACCTGTTTGGGGAGCTATTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTGCAGGAGCGCGTGGACCGCCTCTCTATCAGCGTCACACAGCTAGATCCTAAAGAGGAGGAGCtatccCTCCAGGACATCACTATGAGGAAGGCGTTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGCCCGCCAGTCGCTGCCCATCCCCCTGCAAGAGACCTTTGACCTCTGCGAGCAGCCGCCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACCAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACAGAGGacaagaggaaggagaagaggaaaCAGAAGTTGCAGGACCCCCACCTGTATGATCAGGTCTATAGGTACTTAGACCTCCCAGGACAGGTTAGGGGAAACGACCGTACTCTGGAGACTGAGAAGATCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTCGGGGCGGAGCTAGCTGAGGACGACCCTGAAGAGGCCCTGAAACACAGAGAGCCTAATGGCTCCGCTCCCTACCACGACAGgtctggaGCTCCTAGTTACTTGGATGGGATGGACGGGCCATTCTCCCTAGCAGCGCTGCCCTACAGCCAGATGAATGAGCTGCTGAACCGCCCTGGGGACAGAATGTACACACGACCCCAtgaccccccaccaccaccccctatGCACCATCTGGGAGACATCAAACCCCCCTCCATGATCAGCTCCAGTTCAGGTTTTTCAGACAGCAGACCCCAATCTCCAGCACAGACTCACGGCTTCAACTCCAACACACCTCCCCCTCCGCCACCTCCCttgccccctccacctcctcccttgCCTTCCATGTCTGGTTTTGGCCCTCGGggcacccctcctcctcctattcctcctctaccCATCCAGCAGCAGCCCCCggccatcccccctcctcctgcaCCTCTCCAGATCGCCCCTGGCGTCCTCCACCCTGCCCCTCCCCCAGTGGCACCTCCCCTCCACATCTCCTCCCCAGCCCGTCTCCAGCAGGTCCTGGACAGGGGCCCGACCCCTGGCCAATCAGATGGCACCGTGCTGCCTCCTCCGCCCCCTCCCCCGCCCCTCCCAGGAGTACGGAGCTCCTCCCCCTGCCCGCCGGGCCCACCCCCCGTGCCTTCCTTCCTGTCAGGTGCCATGGCGTCCCCGCTCTCTCACTCAGGGGGGAAGAAACACTCCGCCAACCTGCCGCCCATCAGCGATGCACGCAGTGTCCTATTGGAGGCCATCCGCAAAGgtATCCAGCTCCGGAAGGTGGAGGAGCAAAGAGAGCAGGAGGCAGCCAAACACGAGCGTGTTGGGAACGACGTGGCCACCATCCTGTCTCGACGCATTGCCGTCGAGTACTCCGACTCAGAGGACGAGTCCGAGTTCGACGAGGGAGACTGGATGGAGTgaatgagatggagggagaggaaaagaaaagagagggggacaaAAGGCAGAACTGTCACCCAACTGTACCCCCTTTAGAGATGTCAGAATCCATCCTTACAACCACTATCCTCTGTCAGTCCTGTTTTACCCCCTCACCTGTCatcctctacacctctctctctctcgccctcttgctctctctccccctctttctcactccccattctttctatcctctctccccctatttttcctccatctctctctttttctctctctacacctccct
>XM_036976020.1
TGGCTCTCAAACAATAGAAAGTGGTATGTACCATCATGGTCTCTACGATAGGTACATTTCCCTACGAAGTCAAAGATGGTCATTTCTACTTTGCATTTATAAAACACAGTTTCTTCGCGTGTCGATCAATATATGTGGATGAATTCATCTGAAAATCTGCCGTCAACTCAACTTCGCCCGTTGTACTGTCCGTTGCGTTAGATTGTGCCCCCGGGATCCCTTTTTGAAGGGGAATTGTGCCTTGATCCTTCGCTGCTACCTTTCTAACGGGATTCATTTTGCCCCGGCTATATGATAACCACAGCATGGAATGAGGCTGGATATTTGAATTGATTGAAACAGCGAATTGCACTGTACTGCAGTAGAGATGACAAGAACATAGGAGGAATTGAACAAACATTTAAGcaggaagcgGTCTCCTGCATGCCGGAGAAAGCAGTAGATGTCCTGATCCAGTTTGGCACCAAATACgTGTGGTAGCCGTGGTCTCCCAGGATGCCGTTGGTGAAGAGGAGTATCGAGCCCAGGCACCTGTGCCACACAGTGCTGCCGCGGGCCATTAAGAATGAGCTGGAGTGTGTGACCAATGTGTCCCTAGCTAACGTCATACGGCAGCTCAGCAGCCTcagTAAGTATGCAGAGGACCTGTTTGGGGAGCTATTCAACGAGGCCCACTCCTTCTCCTTCCGGGTCAACTCCCTGCAGGAGCGCGTGGACCGCCTCTCTATCAGCGTCACACAGCTAGATCCTAAAGAGGAGGAGCtatccCTCCAGGACATCACTATGAGGAAGGCGTTTAGGAGCTCCACCATCCAGGACCAGCAGCTGTTTGCCCGCCAGTCGCTGCCCATCCCCCTGCAAGAGACCTTTGACCTCTGCGAGCAGCCGCCACCCCTCAACATCCTCACACCCTACAGGGATGATGGTAAGGAGGGGCTGAAGTTCTACACCAACCCCTCCTACTTCTTTGACCTGTGGAGAGAGAAGATGCTGCAGGACACAGAGGacaagaggaaggagaagaggaaaCAGAAGTTGCAGGACCCCCACCTGTATGATCAGGTCTATAGGTACTTAGACCTCCCAGGACAGGTTAGGGGAAACGACCGTACTCTGGAGACTGAGAAGATCCCGCGGGCGCCTCACGACCGGAAGAAGGAGTGGCAGAAACTGGCGCTCGGGGCGGAGCTAGCTGAGGACGACCCTGAAGAGGCCCTGAAACACAGAGAGCCTAATGGCTCCGCTCCCTACCACGACAGgtctggaGCTCCTAGTTACTTGGATGGGATGGACGGGCCATTCTCCCTAGCAGCGCTGCCCTACAGCCAGATGAATGAGCTGCTGAACCGCCCTGGGGACAGAATGTACACACGACCCCAtgaccccccaccaccaccccctatGCACCATCTGGGAGACATCAAACCCCCCTCCATGATCAGCTCCAGTTCAGGTTTTTCAGACAGCAGACCCCAATCTCCAGCACAGACTCACGGCTTCAACTCCAACACACCTCCCCCTCCGCCACCTCCCttgccccctccacctcctcccttgCCTTCCATGTCTGGTTTTGGCCCTCGGggcacccctcctcctcctattcctcctctaccCATCCAGCAGCAGCCCCCggccatcccccctcctcctgcaCCTCTCCAGATCGCCCCTGGCGTCCTCCACCCTGCCCCTCCCCCAGTGGCACCTCCCCTCCACATCTCCTCCCCAGCCCGTCTCCAGCAGGTCCTGGACAGGGGCCCGACCCCTGGCCAATCAGATGGCACCGTGCTGCCTCCTCCGCCCCCTCCCCCGCCCCTCCCAGGAGTACGGAGCTCCTCCCCCTGCCCGCCGGGCCCACCCCCCGTGCCTTCCTTCCTGTCAGGTGCCATGGCGTCCCCGCTCTCTCACTCAGGGGGGAAGAAACACTCCGCCAACCTGCCGCCCATCAGCGATGCACGCAGTGTCCTATTGGAGGCCATCCGCAAAGgtATCCAGCTCCGGAAGGTGGAGGAGCAAAGAGAGCAGGAGGCAGCCAAACACGAGCGTGTTGGGAACGACGTGGCCACCATCCTGTCTCGACGCATTGCCGTCGAGTACTCCGACTCAGAGGACGAGTCCGAGTTCGACGAGGGAGACTGGATGGAGTgaatgagatggagggagaggaaaagaaaagagagggggacaaAAGGCAGAACTGTCACCCAACTGTACCCCCTTTAGAGATGTCAGAATCCATCCTTACAACCACTATCCTCTGTCAGTCCTGTTTTACCCCCTCACCTGTCatcctctacacctctctctctctcgccctcttgctctctctccccctctttctcactccccattctttctatcctctctccccctatttttcctccatctctctctttttctctctctacacctccct

Function

symbol description
wasf1 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF1 (WASP family member 1).

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 1 isoform X1

GO: NA

KEGG:

id description
K05753 WASF1; WAS protein family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976021.1 False 2068 mRNA 0.59 10 26327551 26465676
XM_036976022.1 False 2348 mRNA 0.56 10 26332687 26465676
XM_036976019.1 False 2353 mRNA 0.56 10 26332688 26465676
XM_036976020.1 True 2419 mRNA 0.56 11 26332688 26465676

Neighbor

gene id symbol gene type direction distance location
LOC110522374 mettl24 coding upstream 46987 26216401 ~ 26280564 (+)
LOC110522377 LOC106607986 coding upstream 149734 26059992 ~ 26177817 (+)
LOC110522376 sash1 coding upstream 269738 25761890 ~ 26057813 (+)
LOC118964400 NA coding upstream 530396 25773001 ~ 25797155 (+)
LOC110522379 LOC106607987 coding upstream 727670 25580399 ~ 25599881 (+)
ak9 ak9 coding downstream 137720 26603396 ~ 26624669 (+)
ppil6 ppil6 coding downstream 159236 26624912 ~ 26642218 (+)
LOC110522366 cd164 coding downstream 185827 26651503 ~ 26667757 (+)
sesn1 sesn1 coding downstream 220466 26686142 ~ 26756544 (+)
snx3 snx3 coding downstream 470159 26935835 ~ 26961848 (+)
G336098 NA non-coding upstream 45535 26269455 ~ 26282016 (+)
G336062 NA non-coding upstream 163357 26161680 ~ 26164194 (+)
G336055 NA non-coding upstream 177486 26149671 ~ 26150065 (+)
G336010 NA non-coding upstream 243685 26083458 ~ 26083866 (+)
G336006 NA non-coding upstream 246594 26078125 ~ 26080957 (+)
G336221 NA non-coding downstream 24032 26489708 ~ 26490154 (+)
G336234 NA non-coding downstream 37621 26503297 ~ 26503561 (+)
G336244 NA non-coding downstream 48275 26513951 ~ 26514547 (+)
G336295 NA non-coding downstream 131016 26596692 ~ 26631463 (+)
G336318 NA non-coding downstream 180839 26646515 ~ 26716267 (+)
G334473 armt1 other upstream 1904820 24420114 ~ 24422731 (+)
G334475 NA other upstream 1908605 24417582 ~ 24418946 (+)
si:ch211-51e12.7 NA other upstream 2257875 24063831 ~ 24072963 (+)
G334116 NA other upstream 2493129 23833821 ~ 23837875 (+)
G336464 NA other downstream 427459 26892229 ~ 26894837 (+)
LOC110522355 plekhg1 other downstream 710705 27054628 ~ 27185449 (+)
LOC118964415 LOC106608050 other downstream 1125176 27537262 ~ 27601564 (+)
G339660 NA other downstream 2393040 28858716 ~ 28859155 (+)
G339693 NA other downstream 2448923 28914599 ~ 28915539 (+)

Expression


Co-expression Network