XLOC_022452 (camta1a)


Basic Information

Item Value
gene id XLOC_022452
gene name camta1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30061364 ~ 30431333 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044281
GAAATTGCAGCATACTTGATAACCTTTGAAAAGCATGAAGAATGGTTGACAACCTCCCCTAAAACAAGGCCACAGAATGGGTCGATGATCCTTTACAATAGAAAGAAGGTGAAGTACAGAAAGGACGGCTACTGCTGGAAAAAAAGGAAAGATGGGAAGACCACGCGGGAGGATCACATGAAGCTTAAAGTGCAAGGAGTGGAGTGTCTATATGGCTGTTACGTTCACTCCTCCATCATCCCCACCTTCCACCGCAGGTGCTACTGGCTTTTACAGAACCCAGACATCGTGCTGGTCCACTACTTGAATGTGCCAGCTATTGAGGATTGTGGGAAGCCATGCGGGCCCATCCTGTGCTCCATCAATACGGACAAGAAAGAATGGGCCAAATGGACGAAGGAGGAGCTAATTGGCCAGCTGAAACCCATGTTTCATGGCATCAAGTGGACTTGCAGCAATGGGAACAGCAGCTCTGGCTTCTCTGTGGAGCAGCTGGTGCAGCAGATACTGGACAGCCACCAGACCAAGCCCCCTCCCAGGACTCACAACTGCCTCTGCACTGGCACTCTGGGTGCTGGGAGCAGTGTGCATCATAAATGTAACAGCGCCAAACACCGCATTATCTCTCCCAAAGTTGACCCTCGTTCAGGAGGCTACAGCAGCACCCACTCTGAGCTCCAGAATAATGATGTGTCAGAGGGTAAGACAGAACACAGCCACAGCAGCAAGAACAGCAGCGGGTCAGGAGGAGGGAGCGTACGTGAGAAACGCAACGGCAAAGTTCACAAACCTGTTCTGCTGCACCAAAATAGCACTGAGGTCTCCTCCACCAatcaggtggaagtgccagacaCGACCCAGAACTCCCCTGTATCCATCAGCAGCGGGCTCAACTCAGACCCTGACATGGCTGACAGCCCAGCGGTAACAGGCATGGGCCATGTTGCCTCTGTCATGGGCAGCCTATCCCAGAGTGTTTTCATGTCTGAGGTGACTGGGGATCCCGTCTACAGTATGTCCCCCACCGGAGGCCCCAATACCCATATTATGGGCCCTGATGCCAATCCTCACAGCCTAGTTCTAGCCGTCACCTCTGACAGCCACAAGTTTGCCTTTCCAGGAAGCGGGAGCGCAGATGCAGGTGGTCCCGGAGCAGATGGTTTGTCAATGCTGTCTGCCTCCAGCGTCTCTGAGGAGCTTGTCCTCTCCAGCAGCCTAGACTCCAGCAGCATCAAGATCCCAGAAACCACTATGAACTTTGATCCTGACTGCTTCCTGAATAACCCGAAGCAGGGCCAGACATATGGGGGAAATGGACTGAAGCAGGAGAATGTCGCATCCAGTGCCTCATCCTCCTCAACAGCTAACACCAATGGTTTGCAACGTTCGCCAACTATATCAGATCCAACCTACAGCTTTAGTTCTGCACTAGTAAAAAACATCAAGACCGAGGACACCTCCTTCGAACAACAGCTTGCCAAAGAGGGGAACTACCAGGTAGGGCCAGTCGTAAGCTGTAGCGTATCTAATGGTGGTGGACAGAACTCACTCAGCTTGACTCCTGCTTCCTCTCTGCTGCCCTCTGGAGGTGGCCTAAGTCCAAGCACCACCTTGGAGCAGATGGACTTCAGTGCCATTGATGCAAAACAAGACTACTCCACCGGTCCCACCGCAGTAGGATATACACAGGCAATGAACAGCTTGGCCCACCAGAACCGATCTCCAAGCTTTTTCCTTCAAGAACCACCACAGCCATCCCAAAACCAGCAAGGTCGGCAGAGCTCCAGCCAGAAGGGCCACATGATGGAACATAGCACCCCTGATGGGACCTACATGGGTCTGCAGGTTGTCAAGACAGAATCGCCTGGGAGTAATGGTCACCTCCACCACCATCACGCCCACCAAGGCCAGCACAGACCCAACTGCAATGGAGGCTCACCCACTGAGGTGCAGGGACAGGCTGGCTCACTGCAGCTCCTCCAATATCAGGGAGGTTTCCCAGGTCTTGGTCCAGAGCATGAGGAAGTGGTCGGGATGGATCAGAGCCGCAATGTTGGTGCCGGTCAAGCTGGGGTCACTGAAAACGGAACAGATGGTTTGCTAAAGTCCGGGGATCATCTGCAAGCTTGCAGCGGAGGAGGAGAGACTGCAGGAGCAGATCACTTCATGCAGCAGAGCTCTGAGAATGGAGCAGGAGCTGAAGCTGTAGCTTTGAGGAATGGAAACAGCACAAACGGGCCCAACAACGGCTCACAACAACAACTCCAGCCACTGCTTCAGGGGGCTAATTTGGTTCAGGGGCTCTACAACACCCACCACGGGCTTAGTGGAACCGGAGCCAATGGTGGTGGAGGCACGGGAATGGAAATCAGCTTGGATCATTTCGACATCTCTTTTGGAAACCAGTTTTCAGATCTAATCAATGACTTCATCTCGGTGGACAGTGGAGCCACAGCTGTAGGGGCCACAGGGACGTTATATACCCACCAGTTGGTGGCCCCGCCTGGGTCTGATGGAACAGCCAACTCTGGGGGGAACCAACAGCAAGGTCAAGAGGATGCAAGCAACAGGACGGCAGGATACAGCTCCTCGGAACTCTGCCTCCAGTCGTGCTGCAGCCCCCAGTCTTTAGGTGGAGGCGCTGGTGCCGGTGGAGGGTCGGGAGAGACAGGCTCACTGGCATACATGCATGTCGCAGAAGTAGTGTCAGCAGCAGTGGCCCAGGGCACTCTAGGAATGTTGCAGGCCACCGGCCGACTTTTCATGGTCACAGACTACTCTCCAGAGTGGTCCTACCCAGAGGGTGGTGTGAAGGTCTTAATCACAGGCCCATGGCAGGAAGACAGCAGCAGCTACACTTGTCTGTTTGACCAGATTTCTGTCCCTGCTTCCCTCATCCAGCCTGGGGTTTTACGTTGCTACTGTCCCGCCCATGATACTGGCTTGGTGACTCTACAGGTGGCTGTTAGTAATCAAATCATCTCTAACTCAGTAGTGTTTGAGTATAAAGCCCGTGCGCTCCCCTCCCTGCCTTCATCCCAGCACGACTGGCTGTCACTTGACGATAACCAGTTCAGAATGTCCATCCTGGAGCGTCTGGAGCAGATGGAGCGCAGGATGGCTGAGATGGCCGGTCAGCAGCAGCAGGGCAGTGGAGGAACAGCTGGAactggaggaggtggaggaggaggaaacGGAGGTGCTAATAGCCAGTCTCAGTGTATTTCGGGACAGGCAGGAAGCTCTTTTGAGAGTCGTGTGGTGGTCGTTTGTGAGAAGATGATGAACCGGGCCTGCTGGGCCAAATCCAAACACCTGATTCACTCCAAGACCTTCCGGGGCATGACCTTGCTACACCTTGCCGCAGGCCAAGGCTATGCCACCCTCATTCAGACTCTCATCAAATGGCGCACGAAGCATGCAGACAGCATTGATCTGGAACTGGAGGTGGACCCTCTCAACGTGGATCACTTCTCTTGCACTCCATTGATGTGGGCTTGTGCATTGGGTCACCTGGAGGCAGCAGTGGTCTTATACAAGTGGGACCGGAGAGCACTGGCCATCCCAGATTCTCTTGGACGTCTGCCCCTCTCTATCGCTCGCTCCCGTGGCCACACCAAGCTGGCGGAGTGTTTGGAACAGCTCCAGAGGGAGGAACAGCAGCAGCAGACCCCGTCCTCTTTACCCCCCGCCTCCAGCATGTCTTTCTCTCCCAACCCTGACATCCCCACCTCCAACAGCTGGATGGTCAGCTGGGCCAGCGACAGTATGGTGGCGCCCAGCGGGCAGAACACTGGCACTGCCACCACTACTACAAACTCTTGCAGCAACCAGAACCCCGATTTGAGAAGGCCCAGATCAGAGCCCTCCAGCTACTACAGCAACGAATGCCAGAGGGATCTCCCCCTCGCCAAGAAACACAAGCCCAACCCTGAGCTGGTTCAAGCACAGCTGGATAAGCCCATGTCAGTTCCCTTGAACATGGAGCAACAGACACATAAACTGTCAACCAGCCCTAAGACCACCCCATCCAGCCCGGATAAGAGTGTCTCTGAGGAGGGTTTGGGCACAGGGAGCATCCCACAAATTAAGATGTCCTCTTTCCGTGGTGGACATAAATGGAGCACCAGAGAGGGGCTCAGGAAGAGCAGCATTAGCAACATGGGGAAGGAGAAGTTGGCCAACCGGTTGAGACAGCGTGGCGAGTCCCTCAGCATGCTGGGAATTGTGGAGAGGGAGATGGTAAACACTGAGATGCTTTCTTACAAGGAGGATCAAGAGAACCAGGACTGCCTCTCGCACATGGAAGACCTGCAGGCCAATATGATGAGCCTGGCAGAGCACATTATTGAGGCGACTCCAGAGCGGATCAAGCGGGAACATTTTCCAGCTGTAGAGTCTGTTCCTCTGGACAACAGTGGCCTCACCAACACCATGAGCTGGCTGGCCAGTTACCTGGGAGACGTGGAACACCTACCCAGCATCATTCACTTGAGCCCCATTTACAGTGAACCCCTGACCCCTCCCTCCAACCCTAGCCTGAGCCCGGGTAACTCGCCCATGCGTGAAGGCCCGTTTGAGAAGCCGACTTTGCCTGCTCCGGCCGAGTGGAGTGAGTTTCTTAGAGCCTCCAACAGCAAAGTGGAGCGAGAGCTTGCCCAGCTCACACTGTCCGACCCCGAGCAGAGGGAGCTCTACGAAGCCGCACGGCTGGTGCAGACTGCTTTCCGCAAGTACAAGGGACGGCCACTGCGCGAGCAACAGGAAGTAGCCACCGCTGTCATTCAGCGCTGTTACAGGAAGTACAAGCAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAGTTCCGCAGCTACCACGAGCAGAAAAAGTTTCAGCAGAGCCGGCGGGCGGCCGTACTGATCCAGCAGTGCTACCGCAGCTACAAAGAGTTCGGCCGGCTCAGGCCTCACCGCAGATCCGCCACCGCGGCACTGGTCCAGCACAAACTCAGAAGCAGTCTTCTCACCAAGAGGCAGGATCAGGCCGCCCGCAAGATCATGAGGTTTCTCCGCCGCTGCCGCCACAGAGTGAGAGAATTGAGAAAGGCCAGGGAACATGAGAGCGTCCAGAAGAGCTCCCTCACAATGTGACATTACTCTCCAGACTCTTCCTTTCAGTTTTTCGGTTTCAACCAGAGACGTTTtacaagaggaaaaaaaaaatacaaaaatagcaAGAACACTGCAACTCTTACTACTACTGTATGACTGATACTTCGGCTACTAAACAACTGCATTTTTTCATATCTCTTTATTCCTTCTATTTTTCTTTTACGAAGGAATGAGCCTATTGCTGTGGATCAAAATAAACTCAAAGGACGTTGTTTTAGAAGAAACAACATTCGCTTCGTGgcattttttgcactttttaaaggattgtttttgtcatttttggatgagcatttaaatgtttcatttgaaaaagggaaaaaaatggaAGAAGGGAAGCCCAGCTCTTCAGTGGCTTGTTGAAAGAGGATAAATGAAGATAGAAAGATGGTGACAAAATATATGGAGTCAACACAGAAACATGGCCGGACCTGTTCCGAGTGTTTTCAAAAGATGACAAGATGTGTTTAGTGgttaaaattatcaaaaaaaagaaaagataagaTGAATAATTGATGAAGTGTTTTTTGTACACGCTTTTCTCCACAGCCAGAGCAATTGATCAGAAACTTCCAATCTGTCCATTAAGGATTGTCCGTCTTCTCTTAGCCACAAGGAGAGACTGGCTTGCAAATGAATGTAAAAGGTAAACAAGCAGGCTTGGGTGACCTGTCAAATGCTGAAATTATTTTGCTAACAAGACGTGTGGATAACACAGCTATACGACAACTATTTTCAAATTGATGATATTCAGCCACTAGAAACAATTCCAAGTTAGCAAGACATCGCTCTAGGCAGATCTTGTCTTACGCATGCTTGAAACTAGGccacttttgttttttaactccATGAATGTACTGGAGACACCAAACGCCATCACCTCTGCCCGTTCTTTACTATTGGCACGTTTGTAATTCTTTCTGTTGTCAATCCAATGTTAAATAGTCATCGGTAAAGCCTTTATTTGCCTAAATAATGAGGTTTTCTAAGGGAAAGTTGCATACATTGCCTTGATATCTTTGACACCGTTTGAAAGGTCTCCACACTCGGGGTTAGACAAATCCATATTTTTGACAACTGAGCGGTTCCTGTATATAAAGAGGGTTGCCGGTACGTAAAGTAACACATTTATCTAAGCGGGATTgtattttagaaatatattattttactcaTTGAAAGGGATCAAAACAGATTAGCGGCGAAACCTGAatatttgtatagttttgtttgaaTGCCTAAGAAGTATGGTTGTATCGTTTGTACATAATGTAAATACCTGGGATAAAGTCAAGCTACTGTATGTGCATGACAAAAAcgaagatacaaaaaaaaaaaaagagttcaaaAGCATTAGTGGCTATGCTCTGTAAAACTATTTCACTATAagagtattttattttactttaaatgttcttgaGAAGAACATTTTGCTAAAGCATGACCTTCCTGCGATTATGAAATACTGTATTTATGAGATAGGAGAAAAAGGCAAAATGATCATTAGGTTATGTTTACATCTGTTTGTTTCCTTTGTTTTTCGGGGCTACCAAGAATCTTTTTGCCAACGGTGCCAAGTAATGTGAATGCTACTGCTTAAAGGAAGTTATTCATTGCTGAACAGATAATCACATGGTAAAACGTGACTCACTTGCATAACCGTTGAACGCAGCCGGTCAAGAAGAAAGGTGTATTTCACATATCGTGTTtggtttatttgtatatttgttagTTTCGTGCTTCATAAGCCCaaatacttttgtatttttttgtcagtGAAATGATATACAAATGTTTTCCTGTGATGAATGCAGAAGTAATGGACCTTACAGCAGCTTTAAGTAAGTCTACTTCAGCGAGGCGTGCAAAAAAAACACCCTGTGAGTTGAACGTGACGCTGAAATAACCACGTGCACAGAAAGATTACAGTAGGCTCCCTGTTATGCATGTAAATGCTATTCTTTTGGTGCTAAAACATTGGCGTCATACCTCCAAAGATCAATCTGTTTTAATGGGGCCGCGGTACTTTTAATAGCAGGTGTCGTCGTGGCTCTGGAAAAAGGAGAAAGTATTCCTGAAAGTGATGCACTAGAAATGTGTGTATTTCAGTTTCCCCTCATGTCGAAATGCTTCTTTTGTATTTGAGTCAATAGATTGTCACCTAAATGTTCTCTTGTGTTGGAAGTGCCTGATCGTATTCTAAATCCAGCGAGCCGTGTCAGTCTGCATGTGAGCTTTGCAAGAGACTGGCATTAGTGAGAAGTGAATTACAGTCTGCGTTTTGTTTGGTTCTTTTCCGTTTGGTACTTGTTTCTTTGTCCTTGCATTTTACCACACCAGGATTTTATGGCTTCGTCATAACTCACGTCCTCTATTGGAACTGCCAGATGAACCCGCGAGGACTGCAGATTTCAGTCCGGCTGGTTCTTGCCTTGCATTCATCATTCCGGTAGCAGTTTAGGTTGTCAGCTGATGCACTGAAGTGGCAACTCGAGTCTTATTATGCTTGCATGGGTAACATAGATAACCGGGTGGCTGAAACAGCACCCAAAGCATGCTTATTTTTGTAGATTTGGTAGTCAGGTAGACTTGTTGAAGAAATATTGTTCTGTAAAGCAGCTGGTTTCATGGGTTGCAGACATTTCACCAGAGAGAGGGCTTTGAAACGTAACTTTACAGtacaagaaatcaaaacatttacCCCTGCAGTGAGACCACATGTTAAAATCACAAGTGAAATGTttgattttgtaatattttatcgTGGGGGGAAAAAGCGAGGTCACATGTTCCAAAATTTCCATTTCACGTGTGATCTCACACTCATGTGGTTTTTCTGTAGGGCTACAGGGGCAgcatgaatatatttttttccaaatagaaTTTGGCTTTCTCTTTCGTTTTGGAATTGAGTTTCACTTCACTTTCCATTCCCATTCCTTCACAACTCCTCCACCGCAGAAACAGGTAAAAACAAACTTGCGTACCTCATAAGAAAAGACGCGCCTCAGAACTGTGTCCATATCTATCCACGTTAAAGTGTCCATGGCACTAGTGCAGTTGAAACCTCGGGTGTGAATCCGTCGGGTTCACTTTTGTATCTTAACTCAGGTGCCAAACTGGAGAAAAGGGGAAGAAGTAGAGCAGGTCACTTGAGATTTAGTTGCTGCTTATTGGGAAATGAGCCAGACTGTCCTGATCAAATTACTGTGATTCTGAACATGTCATGCTGTTCgcctttttttaaatcaactatgTGAGCTGAGTTGGCGTACCTTCGCTCCCCATTTGTTGAAAGAGCGGCACTCACTGCTGCTGTTGTATAAGAGCCCGATGGAATGCAGCAGGTCTACACGAATGCTAGTGTAAATACGCATGGATGTGTTTTAGTTCAGCGCAGCTTCTCCGGTTCCTATAGTCACTGCCGTGGACATACTGTATCACAATAAAGAATCAAAAGTGCTGCTCAGATTGATTCATTTTCACCGTCATCATATAGCCATAGATGTAGACGTTCAACAGGACAGCCGTAGTTTATTAGCGCAAGACGGTAACCTCACCTGGTTGCATACGGGTTCATTTTAATGGTATCGCAGCTCAGCCCACAGAAGATACCTCATCCACTTTTGTTTGTCACGTCACCAAGAGACAGAGACTGCCTTTCCGTGCGCATCCGTTCTTTAGAAAAGGGCAGAACAGGGCCCTAGAAAACACCCACCACCACCactcatggacacagagcaataAGCAATTCCTGAAGTGGAGACCTGTGTAGACCTAATGGGGACAGCGATCTGTTGGACACACGTAGCTGACTTACTCTTATGCAAATGCCAGTATTGTGAGATTAGAATGCAGTAGTTTAAGGACAGTGCTTATACGACACCCTTCATTGAGCTGCACGTTTTCATCCCTTTCAAACCCAGAAAATAGCGGCCCTGTCTTTATTACAAGCTACACTTGGGGCTCTCTACACTTTGCATGTTAAACTAGTGTTAGATCTACTTTCCTCTCCTCTCTAGCTGTCTTTTCTCTGTGTCTTTCCCAATTATGTAGCCCTTTCCTTTCCTACTaaaccctgatttttttttttttttgtttcttcttttttctaaATGTCTCTGTTTTTCCTCCTTCCCCCTGGTTTGAGCAATTTATTTTTGTAACTGCATGTTAAAGAGTCACTGAATCGATGGATATGTTAAAAAAGAGAATTCAGCTGCTGAAGCCATGCAAAATGTTTTGAATTGCCCTTAAAAATATGAAAGATGTTTTCTGAATGCTTTATATTCTCTctgctgtaaaataataaaaggggAAAAACTTAAGAAACG
>TCONS_00044282
ATGAGCTGGCTGGCCAGTTACCTGGGAGACGTGGAACACCTACCCAGCCCGTTTGAGAAGCCGACTTTGCCTGCTCCGGCCGAGTGGAGTGAGTTTCTTAGAGCCTCCAACAGCAAAGTGGAGCGAGAGCTTGCCCAGCTCACACTGTCCGACCCCGAGCAGAGGGAGCTCTACGAAGCCGCACGGCTGGTGCAGACTGCTTTCCGCAAGTACAAGGGACGGCCACTGCGCGAGCAACAGGAAGTAGCCACCGCTGTCATTCAGCGCTGTTACAGGAAGTACAAGCAGTATGCACTTTATAAGAAGATGACGCAGGCCGCCATCCTTATCCAGAGTAAGTTCCGCAGCTACCACGAGCAGAAAAAGTTTCAGCAGAGCCGGCGGGCGGCCGTACTGATCCAGCAGTGCTACCGCAGCTACAAAGAGTTCGGCCGGCTCAGGCCTCACCGCAGATCCGCCACCGCGGCACTGGTCCAAAGCAGTCTTCTCACCAAGAGGCAGGATCAGGCCGCCCGCAAGATCATGAGGTTTCTCCGCCGCTGCCGCCACAGGTATTCTCCCACTattcatttgtttccaaacccctccttagcgcgaatctaa

Function

symbol description
camta1a Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090312-183 Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1).

Ensembl:

ensembl_id ENSDARG00000077428

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044281 False 9500 mRNA 0.48 19 30061364 30431333
TCONS_00044282 True 603 mRNA 0.58 6 30070994 30076950

Neighbor

gene id symbol gene type direction distance location
XLOC_022451 NA coding downstream 2188 30054434 ~ 30059176 (-)
XLOC_022450 ccdc187 coding downstream 15631 30013240 ~ 30045733 (-)
XLOC_022449 NA coding downstream 50545 30009263 ~ 30010819 (-)
XLOC_022448 CU695073.1 coding downstream 160129 29900651 ~ 29901235 (-)
XLOC_022447 slc25a33 coding downstream 182721 29861243 ~ 29878643 (-)
XLOC_022453 CR456642.2 coding upstream 85866 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 coding upstream 176650 30607983 ~ 30608101 (-)
XLOC_022455 thap3 coding upstream 294383 30725716 ~ 30727596 (-)
XLOC_022456 pcmtd2a coding upstream 324471 30755804 ~ 30764319 (-)
XLOC_022457 myt1a coding upstream 335977 30767310 ~ 30787932 (-)
XLOC_022446 FP101914.1 non-coding downstream 217050 29841211 ~ 29844314 (-)
XLOC_022443 NA non-coding downstream 238799 29821201 ~ 29822565 (-)
XLOC_022458 NA non-coding upstream 475091 30906424 ~ 30921011 (-)
XLOC_022461 NA non-coding upstream 821967 31253300 ~ 31266621 (-)
XLOC_022466 NA non-coding upstream 989478 31420811 ~ 31423522 (-)

Expression


Co-expression Network