tcp1 (tcp1)


Basic Information

Item Value
gene id tcp1
gene name tcp1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27186465 ~ 27195351 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600692.2
TGCTGGGAAATATATTTCATCATATAGCAGTTGAATAAAAAGTGAGAAATGTATATCCTATATACAGTCTTACGCATACATTGGTTTCGTAATGAAAATTATTTTTGTCCGATGCCATTATTGTTTTAAAGTTTAATCTTCTAGAATGTTCTCGTCTATTCTCGGTTCTTAATCTTTACCCAGAAGCCCTGGTTCCCCACCGGTTTACCCATAGTTCATTACTTCGTTTCCTTTCTTCTGTCTCTTTAGCTTGTCCAAGATGTCGTTAATGGATGGAGCGTTAAACGTGTTCGGCACGAGAACGACCGGCGAGTCCGTTCGTTCTCAAAATGTCATGGCCGCATCATCCATTGCCAACATCGTCAAGAGTTCCCTTGGCCCGGTCGGGCTGGACAAGATGTTGGTGGATGACATCGGGGACGTGACTATCACCAACGATGGGGCTACCATCCTGAAGCTGCTGGAGGTGGAACACCCAGCAGCCAAGGTGCTGTGTGAACTGGCTGAGCTGCAAGACAAGGAGGTTGGGGATGGGACAACTTCAGTGGTGATCATTGCAGCAGAGCTGCTGAAGAGCGCAGATGAACTGGTGAAGCAGAAGATCCATCCAACTTCAGTCATCAGTGGATACCGCCTGGCCTGCAAGGAGGCAGTACGCTACATCAATGAGAACCTGACCATCGCAACAGATGACCTGGGAAGGGAGTGTCTGGTCAACGCAGCCAAGACCTCCATGTCCTCCAAGATCATCGGAGTTGATGCAGACTTCTTTGCCAACATGGTGGTGGACGCTACTCTGGCAGTGAAGTTTGTAGATCAGAAGGGTGTGGCGAGGTACCCCATCAACTCCGTTAACGTGCTCAAAGCCCACGGACGCAGCCAGAAGGAGAGCTATCTTGTCAATGGATACGCACTCAATTGCACTGTAGGGTCTCAAGGCATGGTGAAGCGTTTGACCAACGCCAAGGTGGCGTGTCTGGACTTCAGCCTGCAGAAGACCAAGATGAAGATGGGAGTCCAGGTCCTCATCAATGACCCAGAGAAACTAGACCAGATCAGACAGAGGGAGTCTGACATCACCAAAGAGAGGATTCAGAAGATTCTGGCGTCTGGTGCTAACGTGATCCTGACAACTGGGGGCATCGATGACATGTGCCTCAAGTACTTTGTGGACGTGGGAGCTATGGCTATCAGGAGGGTCCTCAAGCGGGACCTCAAACGCATCGCCAAGGCAACGGGAGCCACCATCTGCCCATCCCTGTCTaacctggagggagaggagacgttTGAGACAGCCATGTTGGGCCACTGTGAGGAGGTGGTGCAGGAGCGTGTGTGTGACGATGAGCTCATCCTGGTCAAAAATACCAAGGCCCGTACCTGCGCCTCCATCATCCTGCGTGGGGCTAATGACTTCATGTGTGATGAGATGGAGCGGTCCCTGCATGATGCTCTGTGTGTGGTTAAGAGGGTGCTGGAGTCCAAGTCTGTTGTACCAGGAGGTGGTGCTGTGGAGGCAGCCCTGTCCATCTACCTGGAGAACTATGCCACTAGTATGGGTTCTCGTGAGCAGCTGGCCATAGCAGAGTTTGCCCGTTCCCTCCTGGTCATTCCCAAGACCCTGGCTGTGAACGCTGCTCAGGACTCCACTGACCTGGTCGCCAAGCTCCGAGCCTTCCACAACGAGGCCCAGGTCAACCCCGAACGCAAAAACCTCAAATGGATTGGTCTGGACCTGGTGAATGGTAAACCCAGGGACAACAAGCAGGCTGGTGTGTACGAGCCCACCATGGTGAAGACCAAGAGCCTCAAGTTTGCCACAGAGGCCGCCATCACTATCCTCCGTATCGATGACCTCATCAAGTTGTTCCCAGACCAGAAGGAGGGTGGGCCTTCGTACCAGGACGCCGTTGCATCAGGACAGATGGACGGGTAGACATTCCTGTATCCTGTAACTGGTTCCAGTTCTGGAATCTGCCCTGGGTTTCTTAGATCCCAAATGTGGTTCTGGTCCGCTTGGCTTTGTCTCTGTATTTATACATACAAGCTCTTGGCTGTTCCGTCATAGGTTGTGCACTCTGCTTGTTCCCATGTGGTAACCTGTTTAATCTGGGAAATGTAACTGATTCTGTTGGACACAAATAAACCCTGCTGGATTA

Function

symbol description
tcp1 Predicted to enable unfolded protein binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be part of chaperonin-containing T-complex. Orthologous to human TCP1 (t-complex 1).

NR:

description
PREDICTED: T-complex protein 1 subunit alpha

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09493 CCT1, TCP1; T-complex protein 1 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600692.2 True 2159 mRNA 0.51 12 27186465 27195351

Neighbor

gene id symbol gene type direction distance location
LOC110522355 plekhg1 coding upstream 1016 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 181846 26998492 ~ 27004619 (+)
snx3 snx3 coding upstream 224617 26935835 ~ 26961848 (+)
sesn1 sesn1 coding upstream 429921 26686142 ~ 26756544 (+)
LOC110522366 cd164 coding upstream 518708 26651503 ~ 26667757 (+)
LOC110522432 otof coding downstream 206746 27402097 ~ 27524388 (+)
LOC118964415 LOC106608050 coding downstream 341911 27537262 ~ 27601564 (+)
opn8b LOC106608041 coding downstream 429349 27624700 ~ 27664419 (+)
LOC110522435 wdcp coding downstream 562082 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 605572 27800923 ~ 27962367 (+)
G336550 NA non-coding upstream 140772 27044702 ~ 27045693 (+)
G336519 NA non-coding upstream 208066 26978187 ~ 26978399 (+)
G336464 NA non-coding upstream 291628 26892229 ~ 26894837 (+)
G336466 NA non-coding upstream 297282 26888641 ~ 26889183 (+)
G336463 NA non-coding upstream 301127 26885134 ~ 26885338 (+)
G336650 wtap non-coding downstream 11478 27206829 ~ 27213254 (+)
G336705 NA non-coding downstream 101195 27296546 ~ 27298077 (+)
G336709 fndc1 non-coding downstream 107321 27302672 ~ 27305939 (+)
G336723 NA non-coding downstream 132528 27327879 ~ 27371054 (+)
G336724 NA non-coding downstream 138773 27334124 ~ 27340999 (+)
LOC110522376 sash1 other upstream 1128774 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 2763734 24420114 ~ 24422731 (+)
G334475 NA other upstream 2767519 24417582 ~ 24418946 (+)
G339660 NA other downstream 1663365 28858716 ~ 28859155 (+)
G339693 NA other downstream 1719248 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1971167 29166518 ~ 29166996 (+)
G339928 NA other downstream 2140018 29335369 ~ 29336939 (+)

Expression


Co-expression Network