opn8b (LOC106608041)


Basic Information

Item Value
gene id opn8b
gene name LOC106608041
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27624700 ~ 27664419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975468.1
ATGGCTGATATCTTCGCAGCTCTCAATCATCTCAATCAAAAGATGCAGGGCGGTGGAGTCAACATCATCGAAGCGGAGGAAAACCTGAAAGCTTTTCAAAAAAAGCTACCGTTATGGAAGCGACGAACAGAGAACGATAACTTTGCAAACTTTCACCTGCTGGACGACTGTGTAAGTAAGATCGAAGATGTATCTGGAATCGGAGACATTTCTGTACCCGCGGAACTGAAGCAAGCAATTGCCACGCACTTAGATGAGCTTGCAAAGTCTCTCGACGGATACTTCCATACAATATCCAGCGTGGctATATTGTCCATTGTGGGGAACCTGCTGGTGCTCATTATGGCATTTAAGCACTCATCTCACATGAAGCCCCCGGAGCTGCTGAGTGTCAACCTGGCAGTGACCGACCTGGGAGCTGCTGTCGCCATGTACCCTCTGGCTGTGGCCTCGGCCTGGAACCACCACTGGCTGGGAGGAGACACCACATGCATCTACTACGGCCTGGTAGGCTTCTTCTTTGGCACGGCCAGCATAATGACCATGACCGTGATGGCTGTGGTGCGTTTCGTCGTCTCCCTCAGCCTCCAGTCTCCCAAGGAGAAGATCAGCCGGAGGAACGTGAAGCTCCTGTGTTTGTGGACGTGGCTCTATGCCCTGCTGTGGGCCTGCTTCCCTCTCCTGGGCTGGGGCCGGTACGGTCCAGAGCCCTTTGGCCTTTCCTGCACCCTAGCCTGGGGAGAGATGAAGGAACAAGGCTTCTCCTTCGTCATCTCCGTCTTCTCCTTCAACTTGCTGGGGCCCTCCTTCATCATCCTTTGTTGCTACTTTGGCATTGCCTTGAAGCTGTACATTACCTACAAGTCCCTCGACAACAGCAAAAATATCCCAAACATCATCAAGATGCACCGCCGCCTTCTCATAATAGCAGTCCTGATCAGCCTGGGCTTCATCTTATCATGGGCTCCATACGGTTTGGTGAGCCTGGTGTCTGTCGTCAGGGGCAGTGAGTTCATCCGGCCAGAGGTGACCATGCTGCCCTGCCTGTTTGCTAAGTCCTCCACTCTTTACAACCCCCTGATCTACTATATCTTCAGCAAGACCTTTAAGCAGGAGGTGAAGCAGCTGTGTGGTAGATCCAACGCATGCCATGCTTCCAGAGCCAGGAACAACATCACGGACAACGCCATCTACCTGGTGTGTGACGGCAGCCGGACGGAGAATGAGGAGAAGGTGGTGGCCACGGTGGCTGGGAGGACCACTGAGGATAAGTTGTCCTCTGGGAAGAGCCGGAAGATGGAGACCAGGTTAAACTCATTCGACAGCCAATAGGAAGGCctcggggagggagggggggagggaggacatCATACAGTATATAATTTGAAATGAGCTAAGACCAATATCTATGATTTTATTGTTATATCAATTGCTGTTGGCATGAAAATAGTTTTTACATAAAGACAAGTTATACTTTAATAAGTACAACTGTTGTGTGCAACAACTTCCAGGGTAATATCAAATCCTGTATTGATGGTTACATGAAAGAGGGCGTTTGCACTACTGTATCTTAACTTAATGGATGTGAGTGAAAAATGGCATCCAATGAGAGGATATCTGGACTGAGTGAAGAGTGAAGAGGATTGACAATATGCTATAGCCAATAGGGAATCATAGACTGTATACGGTTTGAATGGACGGAGCGTACAGTAGGTGGGCTGTTTTCTTTAGACAAACACAGCTGCCATTGATCAATGCAGAGGAAGGAAGTGACCGTATTCccatggaggagaggatggatggagacaCTAAGCCTGGGgccaccctatcccctatgtagagccatatgggccctggtcaaaagtagtgccctgcaCTAAAGAGCACTGTTAGTGCTCAGGACTGAtccaatgaggagaggagaggatggagaaatGGATGCTTCTAGTGCTCAGGACTGATCccatgaggagaggaggggatggagaaatGGATGCTTCTAGTGCTCAGGACTGATcccatgaggagaggagaggagaggatggaggaacgGATGCTTCTAGTGCTCAGGACTGATCccatgaggagaagagaggatggagaaACGGATGCTTCTAGTGCTCAGGACTGATCCCAGCCCAGCCTCAAAGGTCACACGCCAGCCACTAAGGAGGTTGAAAAGTCATAGTTGAGGTCGGACGGAATCTGAATATGTGAAGGACGAATTGGGTGTCTGTTCATATTTACTTTTAATTCTGTTTAATATCCCCATGGCCACGTAGCTTGGCAAAACCACTTTACCATGACAGTAATTCCTTTTGGATAAAAGCATccgctaaatggcatatattctatataatactgtattattatattatatttgtcTTGAAACTTAGCAGGCACTCTTATCTAAATAGGATGCTAGCATGCTAAGTAGCAGTCAGCCAGGACTGCGAGCGGAGCCTGCTGAGGCTCCTCTGGGTGGGCAACCATGGATTGATGATGGGGATTTCATGCATCTAGTTGACTGGGCTATGCCATAGACTGTACACTAATCTCATAGGTGATGCATCTGGGTtcctactagaggtcgaccgattaatcggaatggccgattaattagggctgatttcaagttttcacaacaattggaaatctgtatttttggacactgatt
>TU382997
ACTGTATCTTAACTTAATGGATGTGAGTGAAAAATGGCATCCAATGAGAGGATATCTGGACTGAGTGAAGAGTGAAGAGGATTGACAATATGCTATAGCCAATAGGGAATCATAGACTGTATACGGTTTGAATGGACGGAGCGTACAGTAGGTGGGCTGTTTTCTTTAGACAAACACAGCTGCCATTGATCAATGCAGAGGAAGGAAGTGACCGTATTCccatggaggagaggatggatggagacaCTAAGCCTGGGgccaccctatcccctatgtagagccatatgggccctggtcaaaagtagtgccctgcaCTAAAGAGCACTGTTAGTGCTCAGGACTGAtccaatgaggagaggagaggatggagaaatGGATGCTTCTAGTGCTCAGGACTGATC

Function

NR:

description
PREDICTED: opsin-5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975468.1 False 2677 mRNA 0.49 4 27624700 27664419
TU382997 True 401 lncRNA 0.47 1 27663305 27663705

Neighbor

gene id symbol gene type direction distance location
LOC118964415 LOC106608050 coding upstream 23136 27537262 ~ 27601564 (+)
LOC110522432 otof coding upstream 100312 27402097 ~ 27524388 (+)
tcp1 tcp1 coding upstream 429349 27186465 ~ 27195351 (+)
LOC110522355 plekhg1 coding upstream 439251 27054628 ~ 27185449 (+)
LOC110522356 ostm1 coding upstream 620081 26998492 ~ 27004619 (+)
LOC110522435 wdcp coding downstream 93014 27757433 ~ 27764552 (+)
LOC110522440 atad2b coding downstream 136504 27800923 ~ 27962367 (+)
LOC118964460 NA coding downstream 206724 27871143 ~ 27872978 (+)
LOC110522445 LOC106608054 coding downstream 893781 28558200 ~ 28567300 (+)
LOC110522446 bmp2 coding downstream 965585 28630004 ~ 28636513 (+)
G338358 NA non-coding upstream 1030 27623375 ~ 27623670 (+)
G338328 NA non-coding upstream 22263 27601731 ~ 27602437 (+)
G336777 NA non-coding upstream 170363 27451518 ~ 27454337 (+)
G336742 NA non-coding upstream 187649 27395375 ~ 27437051 (+)
G336724 NA non-coding upstream 283701 27334124 ~ 27340999 (+)
G338376 NA non-coding downstream 1044 27665463 ~ 27665851 (+)
G338426 NA non-coding downstream 16788 27681207 ~ 27681450 (+)
G338448 NA non-coding downstream 41701 27706120 ~ 27709081 (+)
G338468 NA non-coding downstream 65992 27730411 ~ 27731682 (+)
G338506 ubxn2a non-coding downstream 133723 27798142 ~ 27799207 (+)
G336464 NA other upstream 729863 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 1567009 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 3201969 24420114 ~ 24422731 (+)
G339660 NA other downstream 1194297 28858716 ~ 28859155 (+)
G339693 NA other downstream 1250180 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 1502099 29166518 ~ 29166996 (+)
G339928 NA other downstream 1670950 29335369 ~ 29336939 (+)
G342538 NA other downstream 3717407 31381826 ~ 31382749 (+)
G338383 NA non-coding upstream 15037 27648047 ~ 27648268 (+)
G338379 NA non-coding upstream 22479 27640485 ~ 27640826 (+)
G338363 NA non-coding upstream 37448 27625543 ~ 27625857 (+)

Expression


Co-expression Network