Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110522440 |
| gene name | atad2b |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048568.1 |
| NCBI id | CM023222.3 |
| chromosome length | 46841314 |
| location | 27800923 ~ 27962367 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| atad2b | Predicted to enable ATP hydrolysis activity; chromatin binding activity; and histone binding activity. Predicted to be involved in negative regulation of chromatin silencing and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATAD2B (ATPase family AAA domain containing 2B). |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036976043.1 | False | 7509 | mRNA | 0.50 | 28 | 27800923 | 27962367 |
| XM_036976044.1 | False | 7382 | mRNA | 0.50 | 28 | 27800924 | 27962367 |
| XM_036976045.1 | False | 7486 | mRNA | 0.50 | 29 | 27800954 | 27962367 |
| TU383128 | True | 970 | lncRNA | 0.36 | 2 | 27961361 | 27962363 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522435 | wdcp | coding | upstream | 36371 | 27757433 ~ 27764552 (+) |
| opn8b | LOC106608041 | coding | upstream | 136504 | 27624700 ~ 27664419 (+) |
| LOC118964415 | LOC106608050 | coding | upstream | 199359 | 27537262 ~ 27601564 (+) |
| LOC110522432 | otof | coding | upstream | 276535 | 27402097 ~ 27524388 (+) |
| tcp1 | tcp1 | coding | upstream | 605572 | 27186465 ~ 27195351 (+) |
| LOC110522445 | LOC106608054 | coding | downstream | 595833 | 28558200 ~ 28567300 (+) |
| LOC110522446 | bmp2 | coding | downstream | 667637 | 28630004 ~ 28636513 (+) |
| LOC110521072 | plcb1 | coding | downstream | 736700 | 28699067 ~ 28934753 (+) |
| LOC110522448 | plcb4 | coding | downstream | 995717 | 28958084 ~ 29140138 (+) |
| LOC110522450 | LOC106608065 | coding | downstream | 1191107 | 29153474 ~ 29163882 (+) |
| G338506 | ubxn2a | non-coding | upstream | 1716 | 27798142 ~ 27799207 (+) |
| G338468 | NA | non-coding | upstream | 69241 | 27730411 ~ 27731682 (+) |
| G338448 | NA | non-coding | upstream | 91842 | 27706120 ~ 27709081 (+) |
| G338426 | NA | non-coding | upstream | 119473 | 27681207 ~ 27681450 (+) |
| G338376 | NA | non-coding | upstream | 135072 | 27665463 ~ 27665851 (+) |
| G338504 | NA | non-coding | downstream | 346 | 27962713 ~ 27964402 (+) |
| G338564 | klhl29 | non-coding | downstream | 48552 | 28010919 ~ 28035031 (+) |
| G338605 | NA | non-coding | downstream | 50657 | 28013024 ~ 28040623 (+) |
| G338608 | NA | non-coding | downstream | 57473 | 28019840 ~ 28020286 (+) |
| G338724 | NA | non-coding | downstream | 238051 | 28200418 ~ 28201053 (+) |
| LOC110522355 | plekhg1 | other | upstream | 615953 | 27054628 ~ 27185449 (+) |
| G336464 | NA | other | upstream | 906086 | 26892229 ~ 26894837 (+) |
| LOC110522376 | sash1 | other | upstream | 1743232 | 25761890 ~ 26057813 (+) |
| G334473 | armt1 | other | upstream | 3378192 | 24420114 ~ 24422731 (+) |
| G339660 | NA | other | downstream | 896349 | 28858716 ~ 28859155 (+) |
| G339693 | NA | other | downstream | 952232 | 28914599 ~ 28915539 (+) |
| G339830 | LOC100846954 | other | downstream | 1204151 | 29166518 ~ 29166996 (+) |
| G339928 | NA | other | downstream | 1373002 | 29335369 ~ 29336939 (+) |
| G342538 | NA | other | downstream | 3419459 | 31381826 ~ 31382749 (+) |
| LOC118964460 | NA | coding | upstream | 88383 | 27871143 ~ 27872978 (+) |
| G338570 | NA | non-coding | upstream | 2612 | 27957453 ~ 27958749 (+) |
| G338569 | NA | non-coding | upstream | 6948 | 27954159 ~ 27954413 (+) |
| G338568 | NA | non-coding | upstream | 7374 | 27953688 ~ 27953987 (+) |
| G338567 | NA | non-coding | upstream | 7815 | 27953046 ~ 27953546 (+) |
| G338555 | NA | non-coding | upstream | 35367 | 27925780 ~ 27925994 (+) |
