LOC110522445 (LOC106608054)


Basic Information

Item Value
gene id LOC110522445
gene name LOC106608054
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 28558200 ~ 28567300 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600837.2
TGTGCCTCCCTCTACTTCTCAGACTACAAGAGTCCAGCTACCGCAGCAGAACCCACACAACCGCTCCTACACACACGGATGGAGAACGGGAGCTGGCTTGGCGGTGATGTGGTTAGACTTTGTGCTCTATTTATCAGCTCTTTCTTAGGTCATTTCTACGGGGAGAAAATCTAAGTCTTCCATGATGAAACTGGTGTTTGTTTTTGCCGTGGTTGCGTATTTCTTTGCAGAACATCTAGCACTTCCCGTTGGAGAAGAACGACAGCGAGAGGATGTGGTAACACGGTGCTTGGTTGAGGTCCTGTCCAAGGCGTTGACCAAACCTGACTCTCACCCTCTGGATCAGGAATGTAAAGATATTCTCAAAGCAGGTGCCCAACATGCTGCTCCTGTGGAGAAGAAAAGTGATGAGGTGCTGACTAATGAAGAGGAGGGCAAAGAACATGAACCTGAGGCACCAGGAGCCGACGTGAAAGACATCGAGGCCCTCTTGAAGtctgtggaggagaagagggagacacCGGAGGACGAAGATCGCAGCCAGGAGTCATGGGACCTCAACTACGAGAAGGAGAAAAGGATTTGGAAACCAACGCACAGGTATCATTATAAGAAACCCAATCACAAACGTGATGAGGAGGTTTCTGAAGAAGTGAGAGAAGAGCCAGACGAAGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCACCAAAAAACACCACAAACGAGACGAAGAGGgtttagaggaagagagagaagagccaGAAGAGGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCACCAAAAAACACCCCAAACGAGACGAAGAGGgtttagaggaagagagagaagagccaGAAGAGGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCCCCAAAAAACACCCCAAACGAGACGAAGAGGgtttagaggaagagagagaagagccaGAAGAGGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGAAACACCACAAACGAGACGAAGAGGgtttagaggaagagagagaagagccaGAAGAGGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGAAACACCACAAACGAGACGAAGAGGgtttagaggaagagagagaagagccaGAAGAGGAACGTAGTCAGGAATCCTGGAGCCTGGGCGATGAGAAGGAGAAGAGATATAGGCCTACCTATCGGTACACCCCAAAGAAACACCACAAACGAGACGAAGAAGACGAAGAGCGCAGTCAAGAGTCCTGGAGTCTGGGCgatgagaaagaaaagagagaggaggatgatgaggaaAGAAAGAAGAGGATCTGGAAACCCACCCATCGGTACCACCACAAGAAGCACCACAAACGCAGTGAAGAtccttcagaggaagaggaggaggagaaagataaGAGAATTTGGAAACCCACACACAGATATCACCACAAGAAACACCACAAACGAGGTGCTGACTCATCGGACGAGGAATCAGAGGAGAAGAGATCAGAAgagtcagaggaagaggaggaagaggatagagagaagagaatcTGGAAGCCCACACACAGATACCACCACAAAAAACACCACAAACGTGATGAGGAGCTTtcagaagaagggagagaggagccagATGAAGAACGCAGCCAAGAGTCCTGGAGTCTGGGTGatggaaaggagaagagagatgaggataTGATGAGagatgaggatgagagagaaaagaggattTGGAAACCAACTCACAGGTACCACCACAAGAAGCATCACAAACGCAATGGGgattcctcagaggaggaagacgaggaacGAAGGAGTGATTCGGACGAACACGAGGAGGAGAAGAGGCATGGAGATGCCGAGGAGgacgagagacagagggataggcAGGAGGCTCTGAGGTACCTGGCAGAGAAGAGTCGTCTCCTGGGGGAGGGTGAGGTGTATGAGAAACGTTCTCCCTGGGCTTACAGAGGATACTACCACCCCGCCTGGTGGAAGAGAAGCATAGACCCACACACACCATTGCATAAGATGGAGGAACTGGCGAAGTTGCTGTCCTATAAGAATCACCAGCTGGCCAGCCAATCAGAGCTGGCAGACGAGGAAAAGAAGAGGAGCGTATCTCTAACCCCAGAGGAGGAGAAGGAGCTGGAGAACATAGCAGCTATGGACATGGAGTTACAGAAGATATCTGAGAAGATGCAGGAGGACAGGAGTGACtagatagacaggcagaggcatgCAGACAGGGATGCTAAGATACACAAGGTTAGCACACTGAGATAGTAACAAAAGActagagagagatagactgaccCGTCAGCGTTCCGGACAAAAAAACACTAACATCCAAGAGCCTTGCTGCAAATTCTGCTGTGTTAACCTTTGTACCTGTGAAATGTTGATGTTCTCAAAAGAGACTGTTTAGTTAATATATAAGTATAATAGTATAAAGATAAAGTAGATGCTTTGCTAATTTGTCCGGATATCTATATATTTAAAGTACGCATGACAGTTTtgttcaaacttttgaatggttgtttgtttgttcagTCTGCATTTAATAAAATTAATTATTCTGGGACCAAAATTAA

Function

NR:

description
PREDICTED: trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600837.2 True 2808 mRNA 0.48 7 28558200 28567300

Neighbor

gene id symbol gene type direction distance location
LOC110522440 atad2b coding upstream 595833 27800923 ~ 27962367 (+)
LOC118964460 NA coding upstream 685222 27871143 ~ 27872978 (+)
LOC110522435 wdcp coding upstream 793648 27757433 ~ 27764552 (+)
opn8b LOC106608041 coding upstream 893781 27624700 ~ 27664419 (+)
LOC118964415 LOC106608050 coding upstream 956636 27537262 ~ 27601564 (+)
LOC110522446 bmp2 coding downstream 62704 28630004 ~ 28636513 (+)
LOC110521072 plcb1 coding downstream 131767 28699067 ~ 28934753 (+)
LOC110522448 plcb4 coding downstream 390784 28958084 ~ 29140138 (+)
LOC110522450 LOC106608065 coding downstream 586174 29153474 ~ 29163882 (+)
LOC118964462 NA coding downstream 608026 29174963 ~ 29176894 (+)
G339362 NA non-coding upstream 5887 28545713 ~ 28552313 (+)
G339334 LOC100194698 non-coding upstream 60438 28491256 ~ 28497762 (+)
G339265 NA non-coding upstream 162098 28395892 ~ 28396102 (+)
G339254 NA non-coding upstream 172310 28385605 ~ 28385890 (+)
G338813 NA non-coding upstream 203513 28338033 ~ 28354687 (+)
G339376 NA non-coding downstream 4019 28571319 ~ 28572767 (+)
G339562 NA non-coding downstream 88892 28656192 ~ 28656552 (+)
G339583 NA non-coding downstream 136831 28704131 ~ 28704994 (+)
G339590 NA non-coding downstream 145663 28712963 ~ 28713614 (+)
G339591 NA non-coding downstream 146601 28713901 ~ 28714105 (+)
LOC110522355 plekhg1 other upstream 1373230 27054628 ~ 27185449 (+)
G336464 NA other upstream 1663363 26892229 ~ 26894837 (+)
LOC110522376 sash1 other upstream 2500509 25761890 ~ 26057813 (+)
G334473 armt1 other upstream 4135469 24420114 ~ 24422731 (+)
G339660 NA other downstream 291416 28858716 ~ 28859155 (+)
G339693 NA other downstream 347299 28914599 ~ 28915539 (+)
G339830 LOC100846954 other downstream 599218 29166518 ~ 29166996 (+)
G339928 NA other downstream 768069 29335369 ~ 29336939 (+)
G342538 NA other downstream 2814526 31381826 ~ 31382749 (+)

Expression


Co-expression Network