XLOC_022455 (thap3)


Basic Information

Item Value
gene id XLOC_022455
gene name thap3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 30725716 ~ 30727596 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044286
CAcacaggacttttattttgaaaggctCGGATGAATGGAACCACCAGGGAAACCgaagtaaatgtattttattaagaaaaaaaaactgatttagtGAATAACAAAAGAAATTCCGAATGGTCGTTTACTGCAGACTACactgtaatgtaaatatatatatcaaataatgCAAGAAAGATCTTCAGTTTGAATCATTTTGATACACTGCGGGGCTTTCGACATTCGCCATCTTTGTTCGGGGCAAATATGCCGAAAAGTTGTTCTGCATCTAATTGCACAAATAGGTACAATAACAAAAACCCAGAGATAACTTTTCACAGGTTCCCTTTCAGTAAACCATCGGTTCTGAAACAATGGCTTGATAACATTGGACGAGACGACTTTCAGCCAAGGAAACACATGGTCATCTGCTCTCTTCATTTCACTCCGGACTGTTTCAGTGGTTTGGGAAACCGGAAAAATCTGTTATGGAACGCAGTGCCAACCCTTTTTGCAGTGCCAACCCAGGATGCAAATCAAAATAATTCCAGAAAGAGGCAGAAGAGGGCTTTAAAATCTGCTGCTGAGAAATGGGATGGCATTACACCTGATGGGTTGCCTCTTTTCACTGAGGAGATGCATGAGGACACTCAAGACtgtaacaataatgaagtggctGACTGTCAAAGCACAAAGgtTTTTGCTGCTGCAGACCACACCTATGCCCTCTCGGATGCATGCACAACCAAAGCCCGTCTGTTTAATATTTTAGATGCCAACAGATGGCTGCGGAAAAGGTTGCAGGCCAAATgcagagtgataaaaaggatGAAACTTAAATTGAAAGATGCTCAAAGAGAACTTCTAACTTTGCGTCAACAGATCAGACATCGGCATGTAAATCACTAAAGACATTAACAGATAATAAAAAGTTGAAATCTTAAGTCTTGGCCTTAGAGAAAGAGATTAAACATGTATATTTATCCTAAAGCAGAAGTTTTCCTACTAACTTTTCTGTTCTTTGGATTAGGGCATTGTTTACAGTCTAATTTTTAACGCTTGATAATAAGGTCCCATTAGTTATTGCATTAACCATCACTGAGTAATAATTAGTTTacattgttatttgttattaaaaataaaatgtaaattagttTGTTACCTCAGAAAGCTTAATTATCCAATCAGATTAATTATTATATCTTTCAGCACATTAGAATTTTATGCTTTGAAGACAATGTAGTTGTTTTTGTTGCCCGTGCCTTTGATGCTAGTTCTCCCTGCACCGTTTCAACGTGACTGTCAGAGtctgcctcaatctccgccttgactgcgtcagataaactgcacagtgacagacatgaagcaaGCAGATCATCCTACTacagaactttaccaatgattatttgacagacacacacagcgtGCACATTTACTTTACAATGTTTTTGcacacaaatgtgacaggatacacgttaatatccactgatgtatggatatccgttctgttaatgtacaaaataaacctgatgtaacatccacaaaccgggaaTGAAGCATCTTTTCTAATTGTACTGACAcatggctgtggtgataaagatagtaaaatcgctgtaaatcattacaaacatgcactgttttaaaacga

Function

symbol description
thap3 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP3 (THAP domain containing 3).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-4 Predicted to enable DNA binding activity and metal ion binding activity. Orthologous to human THAP3 (THAP domain containing 3).

Ensembl:

ensembl_id ENSDARG00000041080

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044286 True 1627 mRNA 0.38 4 30725716 30727596

Neighbor

gene id symbol gene type direction distance location
XLOC_022453 CR456642.2 coding downstream 27029 30517199 ~ 30698687 (-)
XLOC_022454 CR456642.1 coding downstream 117615 30607983 ~ 30608101 (-)
XLOC_022452 camta1a coding downstream 294383 30061364 ~ 30431333 (-)
XLOC_022451 NA coding downstream 666540 30054434 ~ 30059176 (-)
XLOC_022450 ccdc187 coding downstream 679983 30013240 ~ 30045733 (-)
XLOC_022456 pcmtd2a coding upstream 28208 30755804 ~ 30764319 (-)
XLOC_022457 myt1a coding upstream 39714 30767310 ~ 30787932 (-)
XLOC_022458 NA coding upstream 178828 30906424 ~ 30921011 (-)
XLOC_022459 osbpl2a coding upstream 210161 30937757 ~ 30960506 (-)
XLOC_022460 si:ch211-197l9.5 coding upstream 313462 31041058 ~ 31060350 (-)
XLOC_022449 NA non-coding downstream 714897 30009263 ~ 30010819 (-)
XLOC_022448 CU695073.1 non-coding downstream 824481 29900651 ~ 29901235 (-)
XLOC_022461 NA non-coding upstream 525704 31253300 ~ 31266621 (-)
XLOC_022466 NA non-coding upstream 693215 31420811 ~ 31423522 (-)
XLOC_022472 BX927365.1 non-coding upstream 965772 31693368 ~ 31717710 (-)
XLOC_022474 BX927365.2 non-coding upstream 1027156 31754752 ~ 31754868 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_12496897_12497743 THAP3 coding CI01000001 null 12496753 ~ 12498096 (-)