LOC110522450 (LOC106608065)


Basic Information

Item Value
gene id LOC110522450
gene name LOC106608065
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29153474 ~ 29163882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600845.2
TGTCTATGACAAAGGTGTGAGAGAGCGGACACTCGCACACACGCACTGCCCGGTGTTCTCAAGACTGAGTTCACACTGTGCGGGAGAGCACGTCGCCAATTTGCCAtccacgcgcacacacaccacatcaaCTGCAACCTGcccagaaggagagaagaggtggtAGCACACACCTCAGCTGCAATCACAGAGATGGAAACAGCAGCATTGCGGTACTGACTAGCTGTGGTTGCTTTTTGAAGGAAACTAACTTCGGGAGAGAAACTTAACTTCTTCCCCACAGCGAATCGCCTGAGTCACGCAGAGCGTCGTTTCCGGCTCCCTGTCTGTCTTAGTATGTGCAGGGGAAACTCTGCTTCGCCGCCGGTGACGCTCACCAAAAACTCTCTCATCGTCTGAATTTAGAGAGGATAGAGTCTTAATTAAGCTGTACAATGCGTTCAGATAGCAGTTAACGAAACAGCCGTGACATTTTAATACGCAGCAAACCAGATGCGAACTCTCACATTCACCTGGAGATTTGCTGCATTCGCGATGATCGTGACTACGAGACACTGAGCagctgtatccctcctctctctcttgtctttttctctctctcgctctctctttgcgGGTTCACTACAAGGCTACCAGCCATTTAGCCATTTCGGCAGTGCAATGGAGCAGCTCAGATTCAGCACCTTGGACACCGCTGGAGTTCTACTGTGTTTGTTcgCGATCCTGGTCCGGTTTACGGTCACCGCCGAGCAGGAGGGAGAGAACCTCTCTGGTCTGTCCACCAACCCGGATAAAGACATATTCGTGGTCCGAGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGATGTCCTCGCACTCAACGGAATAGATCTTATCACGGAGAATGCGTATCTGGCTCTGCCTCGCGGGGCAGACATAGAGGGGAAATGCGGGAGCCAGGACGCCCATATACACATCTCGTGGAATGATAACGCCTACACACTCCGCATCTACTTCGTCAAGgaaaTCAGTGGCAAGGGACATGTGTGGAAAATTAGCAAGGTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCCTCAACCCATACAACCCTGGGAAGCACACAGCCAGCACCCACCATTTGTCAGCGTTAGAGACCCCTGCTGGCCGCTCATATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAGAAGGGAGTGACTGTTGCCATAAGTGACGTCCAGATCCAGCCCTTCGACATCAACTCAGATTTCATGTTCAGTGAAGCCTATAAGTGCATCACGGACCAGAGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGCTTCATCCTGGGCCTCATCATTGTCATCACACTGTCCGTCTACCACTTCCACCTTAAACTGACCGCTGCAGCTCAGTCTCAGCTGCCTTGCGACCGATCCATGTACAACAACATGTAAGGAACTGGACATTTAAACAGCCACTGTACCACAAATCTCCCTGGTCAAGAGGAATATGTAAGAAATCAGATATTATCATCACAATAATACAACTCCATGTTCAAGGTAATAGGACATTGAAACAAGCACAACATGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACATGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAATGTGATGTTCAAGACATTACAACCACTATACTATAAAATCAAGACATCATGACCACTCTCCATTCAAGGATTGGACATTAGAACAACAATCATTGACTACAATTATAACCGCAACGCTCCTGCCTCTCCAAAGTCAAACCAACGTGACTTCCCCTGCTCTGAACTTCACCATATATTGGAGAGTAGGCCAGAACTTGATGGAGGCCTAACTTGCAATATGGCTAACGTGAGATATGCTTTTGAGTAAAACCATGCATTGAAGTCAATTGGAGACTTGCGCAACATTTGATTTACGCACAGAGATTTTTCAGTTAGCATTCCACCCATAGATGGTGTTCTGTTGTTTGTGTCCATAAATCGTAGTTATGTGGAGAAGCCTGCAGTTTGTCATTCCccatcccctgtctctctctgtctttcctgtGAACACGCTGCAAAACAAGTTGTGAAAGTGGAGAGTGTTGTGCTTTGTGCAGGTGTTTCAACGACCTTCAGAAatcatgaaaaataaataattgcaGGCAGTGTATTTACTTTGGTTTGATGGATCCTTTTCCAGATCCCATTTTATGGAATTATATAaagaaaaaatatgaaatatgtaaataaaacaaagaaaacatgtTCTGTAAATAACTTGCAAAGAAATGATGTAATAATTTATCTTCAATCAGAATGTCAGAAGAACAAAGTGTATCATTGTGAAAGAAATGTGCGATATTTAAGCTTCAAAAAtaataaatgtaaaatattttCAGAAGAACTATGCTGATGCAAACTTTAATGTTCACTGAAATAAATTTCCTAGGAGATGTCCTAAACCTG
>XR_002473315.2
TGTCTATGACAAAGGTGTGAGAGAGCGGACACTCGCACACACGCACTGCCCGGTGTTCTCAAGACTGAGTTCACACTGTGCGGGAGAGCACGTCGCCAATTTGCCAtccacgcgcacacacaccacatcaaCTGCAACCTGcccagaaggagagaagaggtggtAGCACACACCTCAGCTGCAATCACAGAGATGGAAACAGCAGCATTGCGGTACTGACTAGCTGTGGTTGCTTTTTGAAGGAAACTAACTTCGGGAGAGAAACTTAACTTCTTCCCCACAGCGAATCGCCTGAGTCACGCAGAGCGTCGTTTCCGGCTCCCTGTCTGTCTTAGTATGTGCAGGGGAAACTCTGCTTCGCCGCCGGTGACGCTCACCAAAAACTCTCTCATCGTCTGAATTTAGAGAGGATAGAGTCTTAATTAAGCTGTACAATGCGTTCAGATAGCAGTTAACGAAACAGCCGTGACATTTTAATACGCAGCAAACCAGATGCGAACTCTCACATTCACCTGGAGATTTGCTGCATTCGCGATGATCGTGACTACGAGACACTGAGCagctgtatccctcctctctctcttgtctttttctctctctcgctctctctttgcgGGTTCACTACAAGGCTACCAGCCATTTAGCCATTTCGGCAGTGCAATGGAGCAGCTCAGATTCAGCACCTTGGACACCGCTGGAGTTCTACTGTGTTTGTTcgCGATCCTGGTCCGGTTTACGGTCACCGCCGAGCAGGAGGGAGAGAACCTCTCTGGTCTGTCCACCAACCCGGATAAAGACATATTCGTGGTCCGAGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGATGTCCTCGCACTCAACGGAATAGATCTTATCACGGAGAATGCGTATCTGGCTCTGCCTCGCGGGGCAGACATAGAGGGGAAATGCGGGAGCCAGGACGCCCATATACACATCTCGTGGAATGATAACGCCTACACACTCCGCATCTACTTCGTCAAGgaaaTCAGTGGCAAGGGACATGTGTGGAAAATTAGCAAGGTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCCTCAACCCATACAACCCTGGGAAGCACACAGCCAGCACCCACCATTTGTCAGCGTTAGAGACCCCTGCTGGCCGCTCATATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAGAAGGGAGTGACTGTTGCCATAAGTGACGTCCAGATCCAGCCCTTCGACATCAACTCAGATTTCATGTTCAGTGAAGCCTATAAGTGCATCACGGACCAGAGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGCTTCATCCTGGGCCTCATCATTGTCATCACACTGTCCGTCTACCACTTCCACCTTAAACTGACCGCTGCAGCTCAGTCTCAGCTGCCTTGCGACCGATCCATGTACAACAACATGTAAGGAACTGGACATTTAAACAGCCACTGTACCACAAATCTCCCTGGTCAAGAGGAATATGTAAGAAATCAGATATTATCATCACAATAATACAACTCCATGTTCAAGGTAATAGGACATTGAAACAAGCACAACATGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGATATTGAAACAAGCACAACGTGATGTTCAAGGTAATAGGACATTGAAACAAGCACAATGTGATGTTCAAGACATTACAACCACTATACTATAAAATCAAGACATCATGACCACTCTCCATTCAAGGATTGGACATTAGAACAACAATCATTGACTACAATTATAACCGCAACGCTCCTGCCTCTCCAAAGTCAAACCAACGTGACTTCCCCTGCTCTGAACTTCACCATATATTGGAGAGTAGGCCAGAACTTGATGGAGGCCTAACTTGCAATATGGCTAACGTGAGATATGCTTTTGAGTAAAACCATGCATTGAAGTCAATTGGAGACTTGCGCAACATTTGATTTACGCACAGAGATTTTTCAGTTAGCATTCCACCCATAGATGGTGTTCTGTTGTTTGTGTCCATAAATCGTAGTTATGTGGAGAAGCCTGCAGTTTGTCATTCCccatcccctgtctctctctgtctttcctgtGAACACGCTGCAAAACAAGTTGTGAAAGTGGAGAGTGTTGTGCTTTGTGCAGGTGTTTCAACGACCTTCAGAAatcatgaaaaataaataattgcaGGCAGTGTATTTACTTTGGTTTGATGGATCCTTTTCCAGATCCCATTTTATGGAATTATATAaagaaaaaatatgaaatatgtaaataaaacaaagaaaacatgtTCTGTAAATAACTTGCAAAGAAATGATGTAATAATTTATCTTCAATCAGAATGTCAGAAGAACAAAGTGTATCATTGTGAAAGAAATGTGCGATATTTAAGCTTCAAAAAtaataaatgtaaaatattttCAGAAGAACTATGCTGATGCAAACTTTAATGTTCACTGAAATAAATTTCCTAGGAGATGTCCTAAACCTG

Function

NR:

description
lysosome-associated membrane glycoprotein 5-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600845.2 False 2876 mRNA 0.45 6 29153474 29163882
XR_002473315.2 True 2837 mRNA 0.45 7 29153474 29163882

Neighbor

gene id symbol gene type direction distance location
LOC110522448 plcb4 coding upstream 13336 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 218721 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 516961 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 586174 28558200 ~ 28567300 (+)
LOC110522440 atad2b coding upstream 1191107 27800923 ~ 27962367 (+)
LOC118964462 NA coding downstream 11444 29174963 ~ 29176894 (+)
LOC118964461 NA coding downstream 18997 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 175654 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 258412 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 300073 29463955 ~ 29478206 (+)
G339719 NA non-coding upstream 6574 29142991 ~ 29146900 (+)
G339721 NA non-coding upstream 11123 29142007 ~ 29142351 (+)
G339781 NA non-coding upstream 130021 29016469 ~ 29023453 (+)
G339767 NA non-coding upstream 152360 28998955 ~ 29001114 (+)
G339747 NA non-coding upstream 172970 28979779 ~ 28980504 (+)
G339841 NA non-coding downstream 31929 29195811 ~ 29196058 (+)
G339844 LOC106608064 non-coding downstream 36441 29200323 ~ 29201127 (+)
G339848 NA non-coding downstream 44495 29208377 ~ 29208841 (+)
G339849 NA non-coding downstream 45115 29208997 ~ 29209272 (+)
G339693 NA other upstream 237935 28914599 ~ 28915539 (+)
G339660 NA other upstream 294319 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1551918 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1968504 27054628 ~ 27185449 (+)
G336464 NA other upstream 2258637 26892229 ~ 26894837 (+)
G339830 LOC100846954 other downstream 2636 29166518 ~ 29166996 (+)
G339928 NA other downstream 171487 29335369 ~ 29336939 (+)
G342538 NA other downstream 2217944 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2254073 31417955 ~ 31422086 (+)
G342571 NA other downstream 2287251 31451133 ~ 31451476 (+)

Expression


Co-expression Network