LOC118964462


Basic Information

Item Value
gene id LOC118964462
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29174963 ~ 29176894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051514.1
TTAGGCGTAAGTCCAAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTAAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAgtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGGGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACATGTAAGTTTTTAAAAATGAAGACTATTTATACaatgaaacaatgttttttttattcacaCTGTTTGTAAACAATAACGTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGCTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca
>XR_005051515.1
TTAGGCGTAAGTCCAAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTAAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAGGGGGACaacgattttttatttttttattttgtattttattttaggtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAAGGGCATTGCGCAGAATCACCAGAGGTATTAATTCTAGGCATTTACATGTAAGTTTTTAAAAATGAAGACTATTTATACaatgaaacaatgttttttttattcacaCTGTTTGTAAACAATAACGTTTGCCCTCTTAGGGTCTACTTGACCTGCTTATTGATTAGAAAGTATGATTAGAAACCAAGGCTGTGGAATATATTCGCTCTCACAGGCTATGAAAAAGACAAAAGCTAGGACATTGACTCCGGAGTGTTGAACTTATGCCCACTCTACAACAACCCCGGTTGTTATATGACCCCTGAGGATCATCTACGAACGTTGGAACATCTACAACTATTGAAGATGCAAAAAGGGGTTTTCAGAAACACATTTGGTTTACAGATATGTATTATTATAAAAATAATATAACATTATTATCATAATCTAAAACACTTTAAAGGATCTCTAATTCAAACATgcaaggatatatatatatatatgatacgATTAACCACTTTAAAACTGTTGCTGCAATATCACTTCTCAATGTGTGTACATTTCAAGCTTTCAACAACAATAAACAAACCAGCTCAATAATGTTTCTCAGACTTACAAACTGTTGAGTTTTCCTAGTTAGTAAAGAAACAACCACTAAGCCAAAACCCCAAAAGTTGTAATATAATCTGTATACAAGTCATTCTATACAGAAAACAGGTACATTTTGATTGATCAAGAATTCCCAATAggtttgtgtcacgccctgaccatagtttgctatgtatgtttataggttttgtttggtatgggtgtgatatgagtgggcattctatgatgtatgtctagtttgtctttTTTCAGTGTTTGGCCGGATATTGTTTTCAATCAGAGGCctgtgttagtcgttgtctctgattgggaaccatatttaggtagcctgtgttgTCATtgttgggtgattgtctatgttaggtgcttgtgtcagcacattgggtatatagcgtcacggtcgttgTTCATTTATTGGCTTGTTCAGTTTACTTTGTGTTTTCGTCATCCATTAAAacgatgcattcacacca
>TU384635
AACGCCCCCCAGGACCCCCCAAACAAAACGCATGACAGAACGGCTCTTTGAATTCACAGCCTTTTGGTCTAAAGCAAACATACAGTTAGTTGGTTGCATACAGGCTATCTCTCGAAACTCATTCCGTACTTTAACAAGTTAGGGACAGAACGTCTATTTTTAACACGTTTAGCACGGCTTTAGCGCAAACCCAAAGGCCCGAATATTTAACTGCCAGGACAGATAGCATAGTCTGTAAAGCCCTCCTAATGGATATTTCTGAAGGCTACTGGACATAAGTGATTGGGAAGCGACTGTTAGACGTAGATTCTCAGAAGCAAACGGCGCCCTGTCCTTTACGTAGCCCTTCACGATCACACATTTTTAGGCGTAAGTCCAAATAATCACATACCCAAGAATATTTATAtattaaaaaaagaaaagtgtGCACTCTAAACGACGTCGTAAGACAACAGGCAGCAGTCCCAGGACAGATAACAGAGTATGTGAAGCCCTCCTAATGGATATTTCGGGAGCTGAgtATGATGGACATCGGACACATAGGGTGACTTGGATGCATTAGGGACTCTGAACGATATCGGAGGAACCGATGAAACAGACAGTATTCGGTCTTTTTGTATGAACGTTTTTCCAAACACTCCAAGAACAGAGAATTTAAACGTCCCGACAACAACCCAGGGAACCACCACCCCCACACAACATAGTCCAGACCCCAACAACAAAAGCACAACGGTGGCCCAA

Function

NR:

description
zinc finger protein 391-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051514.1 False 1436 mRNA 0.38 2 29175326 29176894
XR_005051515.1 False 1481 mRNA 0.37 2 29175326 29176894
TU384635 True 741 lncRNA 0.45 2 29174963 29175836

Neighbor

gene id symbol gene type direction distance location
LOC110522450 LOC106608065 coding upstream 11444 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 35188 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 240573 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 538813 28630004 ~ 28636513 (+)
LOC110522445 LOC106608054 coding upstream 608026 28558200 ~ 28567300 (+)
LOC118964461 NA coding downstream 5985 29182879 ~ 29186037 (+)
LOC110522451 LOC106608077 coding downstream 162642 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 245400 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 287061 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 303282 29480176 ~ 29632371 (+)
G339719 NA non-coding upstream 28426 29142991 ~ 29146900 (+)
G339721 NA non-coding upstream 32975 29142007 ~ 29142351 (+)
G339781 NA non-coding upstream 151873 29016469 ~ 29023453 (+)
G339767 NA non-coding upstream 174212 28998955 ~ 29001114 (+)
G339747 NA non-coding upstream 194822 28979779 ~ 28980504 (+)
G339841 NA non-coding downstream 18917 29195811 ~ 29196058 (+)
G339844 LOC106608064 non-coding downstream 23429 29200323 ~ 29201127 (+)
G339848 NA non-coding downstream 31483 29208377 ~ 29208841 (+)
G339849 NA non-coding downstream 32103 29208997 ~ 29209272 (+)
G339854 NA non-coding downstream 39837 29216731 ~ 29217221 (+)
G339830 LOC100846954 other upstream 8330 29166518 ~ 29166996 (+)
G339693 NA other upstream 259787 28914599 ~ 28915539 (+)
G339660 NA other upstream 316171 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1573770 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1990356 27054628 ~ 27185449 (+)
G339928 NA other downstream 158475 29335369 ~ 29336939 (+)
G342538 NA other downstream 2204932 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2241061 31417955 ~ 31422086 (+)
G342571 NA other downstream 2274239 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2608971 31785865 ~ 31786206 (+)

Expression


Co-expression Network