LOC118964461


Basic Information

Item Value
gene id LOC118964461
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29182879 ~ 29186037 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051513.1
GACTTACGCCTAAAAATGTGTGATCGTGAAGGGCTACGTAAAGGACAGGGCGCCGTTTGCTTCTGAGAATCTACGTCTAACAGTCGCTTCCCAATCACTTATGTCCAGTAGCCTTCAGAAATATCCATTAGGAGGGCTTTACAGACTATGCTATCTGTCCTGGCAGTTAAATATTCGGGCCTTTGGGTTTGCGCTAAAGCCGTGCTAAACGTGTTAAAAATAGACGTTCTGTCCCTAACTTGTTAAAGTACGGAATGAGTTTCGAGAGATAGCCTGTATGCAACCAACTAACTGTATGTTTGCTTTAGACCAAAAGGCTGTGAATTCAAAGAGCCGTTCTGTCATGCGTTTTGTTTGGGGGGTCCTGGGGGGCGTTGATTAGATATCCAGGTTTAACCCCGGGCGGTCGGCCGATACCTTGACATGTCATATGCTGGATAGTTCAAACTTTGAATTTCAAACGATTCTCTACAGATGGGACCCCATGTTGAACCCACACAAACAAACCCTTTGTTTtttgaaacgcacacacacacactcctgctgctcCGTCACACGCACACTCATGCACGCACCCTGATTTTCAATGTCTTTTTCTTCGCGACAGAGTTGGCTGAAGATGTGAAATACCGTTTCACATAGTTACGGACCGGGTTGATGGCTGGAAAGGACATTTTCCCTTCGTTAAAGGATAGATGGTCCGGTTAGCCACGACCATTATCCATTTCAAATTCATCAACTCAAAGACGCTTGTCCGCTCCATCAAAACTCCGTAAGTTTTCCCTCCATGTGTAGATCAACCGTTCCTGCCTGTAAATCCTGGGTATGCCCACATCATTAATGAATAAGATGTGTAGAAAACTGTTTAGCCATAGTTAAAGGCCTTTCATAAAGAGTCTGTCATGATTGCCTGTGCCACACTTATTGCTTGTTACCTAATAATACTGTTGTACATTTAATATCCACTAGCAGATTTCGTCGCATTTGCACAAATTCGGTCATGTTACTGTGGTCTTTTTAAATGTCAGTAAATATGTGTGTAAAGTGTATATGTTTGTTTCACTGTAGATTTGTTTAAGCCCTCCTAGAAACACCTAATTAAAGGCCTTTTCATAAAGAGGCTGTCATGATTGCCTGTGCCACATGTTTAACACGTATTGCTTATTACAGAATACTACTGTTGTACATTTAATATCCCCTAGCAGATTTCGTTGCATTTGCACAAATTCTGTCATGTTACTGTGGTATTTTTAAAAGTCAATAAATATGTGTGTAAAGTGTACATGTTTGTTTCACTGTAGATTTGTTTAAGCCCTCCTAGAAACACCTCATTTCATCCCACAGCCTTAATTAATAAGCTGTGCAGAAGCTGTTTAGCCATAAGTAAAGGCCTTTCATAAAGTGGCTGTCATGATAAACCTGAAATTACCTTTAGGATCTTTTCTTTGGGGTTCTAATCTCCCCAGGTGTACATGCACTGAAAATCCTTAGGCTGGAGCCATCTTGAAGCTCTGTGCCTGTACATATAAAGAGAACTAAATAGGAAACTAGGCTGAGAAACATTATTTAGATGGCTGTTTAATTgttgtttaaagcctgaaatggaCACAATGCCAAGGGACcttgtttctaacacacacacacacatacagacacacattccTGCTCCATAGATAACAAACATAAGGGCAATAAAACTGGGGGGGTCATACCCGGTCCAAAAGTTCaaacacaacaaccacagttcAACCAGGCCCCTAGACATCCATCAACTGGACTACTTCAAAGGATGACATAGAGAtctgaaataacacaaaataacacgTGACCACGGGAACAGGGGGGACGGGGAGGGGGCACATATTCGGACACGCAAAGGTCAAAATGACGTAAGGTCATCAATCAATCATTTTGACGCGtgccgtctactttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051513.1 True 1935 mRNA 0.42 3 29182879 29186037

Neighbor

gene id symbol gene type direction distance location
LOC118964462 NA coding upstream 5985 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 18997 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 42741 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 248126 28699067 ~ 28934753 (+)
LOC110522446 bmp2 coding upstream 546366 28630004 ~ 28636513 (+)
LOC110522451 LOC106608077 coding downstream 153499 29339536 ~ 29348164 (+)
LOC110522452 LOC106608075 coding downstream 236257 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 277918 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 294139 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 447639 29633676 ~ 29641117 (+)
G339719 NA non-coding upstream 35979 29142991 ~ 29146900 (+)
G339721 NA non-coding upstream 40528 29142007 ~ 29142351 (+)
G339781 NA non-coding upstream 159426 29016469 ~ 29023453 (+)
G339767 NA non-coding upstream 181765 28998955 ~ 29001114 (+)
G339841 NA non-coding downstream 9774 29195811 ~ 29196058 (+)
G339844 LOC106608064 non-coding downstream 14286 29200323 ~ 29201127 (+)
G339848 NA non-coding downstream 22340 29208377 ~ 29208841 (+)
G339849 NA non-coding downstream 22960 29208997 ~ 29209272 (+)
G339854 NA non-coding downstream 30694 29216731 ~ 29217221 (+)
G339830 LOC100846954 other upstream 15883 29166518 ~ 29166996 (+)
G339693 NA other upstream 267340 28914599 ~ 28915539 (+)
G339660 NA other upstream 323724 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1581323 27537262 ~ 27601564 (+)
LOC110522355 plekhg1 other upstream 1997909 27054628 ~ 27185449 (+)
G339928 NA other downstream 149332 29335369 ~ 29336939 (+)
G342538 NA other downstream 2195789 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2231918 31417955 ~ 31422086 (+)
G342571 NA other downstream 2265096 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2599828 31785865 ~ 31786206 (+)

Expression


Co-expression Network