LOC110522451 (LOC106608077)


Basic Information

Item Value
gene id LOC110522451
gene name LOC106608077
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29339536 ~ 29348164 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600852.2
GCTGTCACctcaacaacacatcaacaaccgATACTATGGAAGGAAGCAACAGTATCTGGCCCAGTCAACAGCAACCAGGGGGTCCAGTCTGGCCGACACAGCCCAGCCAACAGCCCAGTCAACCCCAACCCCCATCCTGCTGGCCTGAGCAGCCCAGCATCCCCTGCTGGCCTGGTCCTCAATCATCCCAACCAGCCCCAGCTCAACCTCAGCCCATGCCTTGCTTTCCTGGGAACCCGAACACCCCCTGCTGGCCTGGGCAACAGCCAACCCAACAAGCCCCAGGTCCAGCCCAAAACTGGCCTGGGCCACAGCCATCACAACCATCCCCAGCTCCAGCCCAAAACTGGAACTGGCCTGGTCCTCAACCATCCAAACCATCCCCAGCTCCAGCCCAAAACTGGCCTGGTACTCAACCACAACATACCCATCCAGCCCCAACCCATCCCTGCCAGCCGTGCTGGCCTGGACCCCAGCCCCAGCCTTCCCAATTACAGCCCCAGCCTGCACCCCAGCCTTATCAACCTCCAGCCTCAATTCAAGCCCAGGCCCAGGGCCCCAGCCAGCCCAGTCCCCCAGTGTGGCCAGTCCCAGGCTTTAACCCAGGAGTTAACCCAGGGTCTGGATGGCCATTCGGACCTGGTCAGGACCCAGGTGTACAGTCTAGTTGGCCTGATCAGGACCCAGGTGGTTTCCCACCTGCTACACAGTGGAATCCGACACCAACtggacagAATGTGCCCTACAACCTGAACCTACAAAGAGGCATCTACGACAAGATGATGCTCACCATCATGGGCCAGGTCAAACCAAACGCTAAGCAGTTCACAGTGAACTTTCTGCGAGGTAATGACATCGCCTTCCACCTCAACTCTCGGTTCAATGAGGGGGGCAAGCAGGCAGTGGTGAGGAACCACAAGATGGGAGAGCactgggggaaggaggagaggcacACACAGGGAGGCTTCCCCTTCATGGCCGGTCAGTCCTTCGAGATGAAGATTTTGGTTACGTCTGGCGAGTTTAAGGTGGCTGTGAACGGAACTCAGCTGTTTGAGTTTAAACACCGCATCAGAGAACTCAACCAGATCGATCGCATCAACATCCTCCATGATGTCATCCTCACCTCTGTCAACGTAGACACGATACCATGACAACCATACATATGACATCCCAATATTATACAACACTCAGCATAGGCTACATGCATAACATGGTATCAATCTGCAGTTAAAGTCTTTGCAACTTTTTTatgataatggtgatgatgattaAGATGgtgataatggtgatgatgattatgatggtGATAATGGTGACGAGCTGCAAACATAATACTGCATTAATACCCACTAACTCCACAAAAAAACAATCATTTTGCAAATGTGTGTAATTTACAAGGTATGAAGGACTAAGAATTAAGCAATGCCATTTCGTTTAAATGTGTATAATATTTTATATCTATTTTCTGTTGAACATCTATGTAAATAAACATACTTTATGCTTA

Function

NR:

description
galectin-3-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600852.2 True 1507 mRNA 0.51 6 29339536 29348164

Neighbor

gene id symbol gene type direction distance location
LOC118964461 NA coding upstream 153499 29182879 ~ 29186037 (+)
LOC118964462 NA coding upstream 162642 29174963 ~ 29176894 (+)
LOC110522450 LOC106608065 coding upstream 175654 29153474 ~ 29163882 (+)
LOC110522448 plcb4 coding upstream 199398 28958084 ~ 29140138 (+)
LOC110521072 plcb1 coding upstream 404783 28699067 ~ 28934753 (+)
LOC110522452 LOC106608075 coding downstream 74130 29422294 ~ 29461382 (+)
LOC110522453 LOC106608073 coding downstream 115791 29463955 ~ 29478206 (+)
LOC110522454 LOC105017530 coding downstream 132012 29480176 ~ 29632371 (+)
LOC110522456 LOC106608096 coding downstream 285512 29633676 ~ 29641117 (+)
LOC110522458 mmsa coding downstream 337868 29686032 ~ 29706801 (+)
G339864 NA non-coding upstream 105994 29233340 ~ 29233542 (+)
G339856 NA non-coding upstream 118633 29220617 ~ 29220903 (+)
G339855 NA non-coding upstream 119766 29219347 ~ 29219770 (+)
G339854 NA non-coding upstream 122315 29216731 ~ 29217221 (+)
G339849 NA non-coding upstream 130264 29208997 ~ 29209272 (+)
G339937 NA non-coding downstream 7667 29355831 ~ 29356698 (+)
G339938 NA non-coding downstream 8033 29356197 ~ 29356662 (+)
G340011 NA non-coding downstream 149983 29498147 ~ 29498534 (+)
G340081 NA non-coding downstream 299298 29647462 ~ 29647784 (+)
G339928 NA other upstream 2597 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 172540 29166518 ~ 29166996 (+)
G339693 NA other upstream 423997 28914599 ~ 28915539 (+)
G339660 NA other upstream 480381 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 1737980 27537262 ~ 27601564 (+)
G342538 NA other downstream 2033662 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 2069791 31417955 ~ 31422086 (+)
G342571 NA other downstream 2102969 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 2437701 31785865 ~ 31786206 (+)
G343958 NA other downstream 3346822 32694986 ~ 32704371 (+)

Expression


Co-expression Network