LOC110522463 (LOC106608087)


Basic Information

Item Value
gene id LOC110522463
gene name LOC106608087
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29787568 ~ 29798140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600884.2
ACGCGCTCAATCACAGAGCAGATCGAGGCACTCTGCCAGTTGAGGCGCGCGCATGCACACGCACTCCGAAGCGTAGCCTACATTGTGTGATCAGCACATTAATAAAGACTAGGCTATTCCTTAAGCTTGCTTCCGGATCGATATTGGCAGCTTATTGATATGATATTGGTACAGTTGTAATATACACCCGTTATTTAAAGGAAAGGCTGGGGAGAAATATATACCGCCCTGTGCAATGAGGTGAACATCATTCCCGTCTACGACTCCGGCAGCTGAATCGCCATACCATCTCCATACCTGCCCCCGTCATCTGACCACCCCGTTCTAGCCACTGCGACCCTTCTCTACGTCTCCATGTTTACTTTGTGGTGAGTAATGGGAAAGATGCTCTTCCCTGCAACTCTCCATCACCTCCTATTGGTAGGGGTCTGTCTCTGCGTCTACAGCACCCCAGTCCCACCCCTCCACGACTACGCACCCGCCTCACAGGACAGTGGCTGTGATGGACAAGCTGGGGAGCCAATGGAGGGAGAGCCCTGTGTAACACCAGCAACACCTGTCAGTGTGACATCAACAAGTGTCCAATCTGGGCCCTCTGATCCCGGCAGACTGTCCTATGGAATGGCAGAACACATGACTGGCAGCTGGACTGACCTATCAGAGAATGTTGGAGCAGGGGGAGGCACTGGCCCTGATGTGATGGGACGCAAACCAGGGGGGATAGAGCCGGTGACGCAGGCACGAAACGTGGACAGTCATGAGGGTATATCTGGACCGGGAGGGGCTAAGAGccaagggagggaggcagagacaggGGTTGCCTCTGAGAGCTTCTCTGAGGGGAAGGAGACTCACAGACTGCCTGTAGAAGCTCCAGAACTCTACACAGACAAAGAGATGAAAGTTGGGCCCGAAGAGGATCCTATGGAGGATGTACCTACTGTCACCACTGGTGCCATGATAGCTTCCCTAGGAGAGAGGCAAGGGATGACAGTGGCCATGAAAACACCCAGAGCTGCTCTACATGGTGCTTCCACAGCAgccagagccccagaaccagatAGCCAGACAGGGACGCACCTTGCTGGGGATAGAAGAGACCTCATCCTGGAAGAGAGGCCAGATCTCCAAGGAGGAAAGGAAGGGGAACTCAGAGAGAGCTTGCCCGACCTCGGAGCTCTTCTTCTGGGGCAGGAGACAGAGACAACCAGACCGAGCTCCTCATCTCCCCATAGTATCCTTACAAACTCCCCATTGACCTCGATCTCTCCGTCAGTATGGAGATCCAGCAGAGACGCTTCATCGCTGCCCCCTAGTGGTCTGGAGGCCGCTGGCCCTGCATCTCCACACCCCCAAGATGGAGAGACAGCGTTTGCTCTCCCAGACCCCCTCCTGCCCGACCTTGGACCAGCCCTGACAGGATCCTCCAGACAGGATGACCCTGACAGCCTCTGGACTGAACCACTACAGCAAAATGGGGCCGTGGATGCCAGTGCCCCTCCCTTGCAGGACGCGTCCACAGAGGGCACAATGTCATCAGAGGACCTCCCTCTCATCTTCGAGCCCTTTGATGATGTCACACCTGAAGGGGCGGGGGTAGCGACAGCCGTTCTCGCGCCCGGCAACTCACagctgtctgtctccatgtctacCACGGGGACGCTACTGTCAGAGGTGGAGTTCGACCAGGTGGGCACAGGTGACACGGGGCCATCCCGTGTCCCACCACTGGTGCTACCAGATTGGACGTCGCCATGGCAGACATCCGGGGCTGAGATCTCTGAGCCTATCTGTCCTTCTGGTCCACCCATAGACCCTCCCCCTTCAGAGACAGAACAGCCAGGTGGTAGTGAGACCATACAGAACCCAGAGGAAACCCCGCCCACCTCCGAACCCAACCCTACAAGCATCGCCTCCCAGCAGATCACCATGACAACGGTCACCAAGACAACCAATCTGCCTGTGGTCAAATCAGGTCTGGAGGAACTGGAGTCTGAAGAGGAGCCAGAGGTGGATGAGGAGGATGAGAACACAGAGGAGTCAGAGGACAGCGAAGAGGAACAGAAGGAGACCCCTATCCCAGCCCCCACTCAACCTCCCTACAGCCTCATCCCCCCGCCTTCTGTCTGGGTGCAGCGCAATCAGGGCCTGATGCGTAGCTGGGTGGAACTGATCAGAGAAAAGGCAGGGTATGTGTCTGGGATGTTGGCCCCGGTGGGCATTGGCATCATGGGGGCCCTGCTCATCGTTGGGGCCCTCTACAGCATCAGGATGATCCACCGTAAGAGGAGGAACAGCTTCAAACACCAGCGCAGGAGGAAGGCCAGGCACACTGAGCAACCCAGGGAGCCAAGCAGCAACGGCCAGGACCAAGCCATGCTATTGGCTGACAGCTCTGAGGACGAGTTCTGATCCTGCCCACAGCGCTGTGCCTGTAACTGATGAGACTCGGCCCGCGTCGTCGTCGTCATCATATCTCCATGACTACCACATCTCCAATCACTGTGGGTCGATTGGCTATAATTCATCAGAGAGTATTTGACTGTCTAACCAACAAGACGGGTGGGTATTTGACATGTAAAACAGGGTTGAACATTTTAACACCTATGTAGTTACAGGTGCATAGAGGGATAACAATACAATATTTGAAAAATAAACTCCAGGCTATTGACATTCTTGTATGATCCACAATGTGTTTGAGATCCTTTAAACCAACAGTGTGTAGAGCATACAAGAATGACCGTGTGCTGAAGCCTCTTTTTCAATTACTTTCTATGTAATAAAAAGGCTAGAGCAGAAtccatttaataggatctctgtttATGTAGCTGACGAGGAGTGCATTTCAATAGTCTGAAGTGGCTTCCTCTTCTTGTCTCGTTTCCTACATTTAGGAAGCCACTTCAGAAATGAAGCCACTACAGGCTATAGAGATGCACTCACGGTTACTGGAGTAAGATTGTCACACACTATTGAGTTCATAACACATCACAGACACTGAAAAAACGTAAGCTGTCAACACCAGTGTGCATTAATGCACGGTAGATACTTTCATAGACAGCCATTGCTTGATTCAGCCTTGTCGACTGTTTAAGGCCAAATGAATATCATCCTCCTTTAAAAAGCATTCAGCAGGAAACCAGCTCTCTCTGTGTGAAGTTACAGGAAACTGATAATTCTATTGTTGCTCCTCCTGACAATGTTTTTCCTCCAGTGCGTGGCAGGCAACCTCTTTTATGAATGTATATACCAGGCTAATACTTATTTAATCATCTCCATATCATTTACTATTGAATAGCCTACTCTACAGAAAGTCCAAGTCATTCAGAATCATTACATCCCATAGCCATGCTGAGGGATTTGTTAAAGGGAGACTACTTGTATTTTCACTCAACCTCTCTCTTCTGTACTGTTGTTTCTCCTAATTGCCTAACAATCCACTTTTCTTATTTTGCACTGGGACCTGAAAGAACTGAAATGAAAGCCAAAACTCTAAGGAGAAACAGGACGCTTGCTGCTAGTGTACGCACTTAATGTTGAAAAGGTTTCCATTCCCCCTGGTTGATGCCGTTGTGATCCAAATGTATATATTATTGATTTCTGTGGTTGATGCATCTAGTGTCTGCAATTTAGCACTAAATATTAAAGGTGTTTTGAAAAGTCTAATTCAATGTAATTGAGTAATCTTGCATTGTACTGTAGTCATTCAAGTTTGAAATGTGTCACATTTTGCGTGACCATCCCCTGGTAGGATGCTTGAGATACATTGCCTGTGAATATGCAATAATAATGTAATGTACGGGTTCTTCTGTAAAATGATGGCCACATTTCGGGCTTTCTTTCTATAGATACCAAATGTGCAGTGTTACCAATAAAGCTCTCTCTTACCCAGAAGGAT

Function

NR:

description
uncharacterized protein C14orf37 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600884.2 True 3898 mRNA 0.50 8 29787568 29798140

Neighbor

gene id symbol gene type direction distance location
LOC110522461 LOC106608092 coding upstream 60367 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 80767 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 146451 29633676 ~ 29641117 (+)
LOC110522454 LOC105017530 coding upstream 155197 29480176 ~ 29632371 (+)
LOC110522453 LOC106608073 coding upstream 309362 29463955 ~ 29478206 (+)
LOC110522467 LOC106608085 coding downstream 40229 29838369 ~ 29842910 (+)
LOC110522470 prpf39 coding downstream 144036 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 154321 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 998079 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 1018276 30816416 ~ 30823059 (+)
G340153 NA non-coding upstream 17125 29769806 ~ 29770443 (+)
G340125 LOC106608091 non-coding upstream 49167 29737993 ~ 29738401 (+)
G340107 NA non-coding upstream 101962 29685352 ~ 29685606 (+)
G340106 LOC106608094 non-coding upstream 103355 29683820 ~ 29684213 (+)
G340081 NA non-coding upstream 139784 29647462 ~ 29647784 (+)
G340155 NA non-coding downstream 119 29798259 ~ 29803141 (+)
G340182 NA non-coding downstream 28131 29826271 ~ 29826549 (+)
G340193 NA non-coding downstream 53100 29851240 ~ 29851549 (+)
G340201 LOC107574485 non-coding downstream 60958 29859098 ~ 29890519 (+)
G340219 LOC106608084 non-coding downstream 85663 29883803 ~ 29887768 (+)
G339928 NA other upstream 450629 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 620572 29166518 ~ 29166996 (+)
G339693 NA other upstream 872029 28914599 ~ 28915539 (+)
G339660 NA other upstream 928413 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2186012 27537262 ~ 27601564 (+)
G342538 NA other downstream 1583686 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1619815 31417955 ~ 31422086 (+)
G342571 NA other downstream 1652993 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1987725 31785865 ~ 31786206 (+)
G343958 NA other downstream 2896846 32694986 ~ 32704371 (+)

Expression


Co-expression Network