LOC110522467 (LOC106608085)


Basic Information

Item Value
gene id LOC110522467
gene name LOC106608085
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29838369 ~ 29842910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976075.1
AAAAAAATACTTGTGGGCAATAATAATTAATTCTCGGACAGGGTAATTATTATTGAACGGATGTGGAGCAACCGGTAGATGGGTCTGGGTGAAAAAAAGTGACAGATTGAGGCCGGTGGCCGTTACATATAAAAACGTATGAAGTATTGGGATGTGTGCGTGCACGAGAGGAGGAGGGAACTCGCAGTTGCAACTTCGATTCTACAGGTTTCGGTAGAAGAATTGAGAAGAATCCAACACTTGAGGACTAAACTAAAAAGGGTACTTTTCAACGCCTTTTTGTTTTCAAAATTCTCTGCAACTTTGCCCTTCAATCGGAGGCTAGAATGATGTCTTATCTGAAGCAGCCTCAGTACACAGTCAACGGTCTGAGTTTGTCTGCCTCAGGAATGGACCTTCTTCATCCGTCTATCGGCTATCCAGGCGCCCCTCGTAAACAGAGGCGCGAGAGGACGACCTTTACGCGCGCCCAGCTGGACATTCTGGAGAACTTGTTCGCCAAGACCCGCTACCCAGACATCTTTATGCGCGAGGAGGTGGCCCTGAAGATCAATTTACCTGAGTCTCGTGTTCAGGTATGGTTTAAAAACCGAAGGGCGAAGTGTCGCCAGCAGGCACAACAGTCCCAGAGCGGTGCGCAGAGCAAGACCAAACCCGTCAAAAAGAGAAGTTCCCCAATGAGAGAAGCCAGCTCCGAGAGCGGTGCCAGCGGACAGTTCACACCGCCTCCCAGCACCTCAATCCCGCTCGTAAACAGCAGTACTGCCCCGGTGTCCATCTGGAGCCCGGCCTCCATCTCCCCACTGTCTGACccactctctacctcttcctcctcttgtATGCAACGGTCCTACCCGATGACCTACACCCAGGCGTCCGGATACAGCCAAGGCTACACCGGATCCTCATCCTATTTCAGCGGGATGGACTGCGGATCTTACTTGGCGCCTATGCACCACCAGCTCTCCGCTGCGGGCTCCACCATGAGCCCCATGAGCAGCAACGGGGTCTCCAGCCACCTGAGCCCGCCTTCGTCCCTCTCCACGCCAGGGTATGGGGCAGCGGGACTGAGTTTCAGTGGTCCCACAGACTGCCTGGATTACAAGGACCAGGCCGCGGCCTGGAAACTCAACTTCAACACGGACTGTTTGGATTACAAAGACCAGTCCTCGTGGAAATTTCAGGTGTTGTGAGAAGAATGAGTGAGTGACATTATATTTTCACAATGTGGTGAAATAAACGTTAGTCAATCCGATGGGATTGAGTCGGCGAAAGGCATCGTTTTCCAATGGCTGGTCCTGGGCATCAAACTATTACCCCGAACAGCAGCAGTGTGAGTGGAGAGAAGCTGCCGCTTCGTCTCTCTGACAGCGTAACAACTGCTGAGTTAACTTATTGAAAATTCAGTGAACTCTCTTTAACTTTGATCAAGGACATGGAACAAAAGTGTTGTCCAAGAAGAAATTGATCAAGAGAAGCTGCAACCCTTGGCTAAGCGCGTGGAATGGGTCAGCTTTCCATAAGCTTCTTACGACTCCCCGATCCTCTCCTCTTGGTTGGCAAACTAAAGGGGCCCTTTGATCAAAGcattgtgtgcgtgcgtgtgcgcgcctGTGAGGCGAACCTGGATGCACTATTTAATTTATGAAAAATGTTTATAAGACACTAGTTCCAACAGACAATCAACAGTATGCGTGTGCTCATAAATGTCCCCTAAGTGTTTTGGCATTTTCTATTTGTGTTAGCTTTTTGAGACTGTGATTCCTTGTACCCGTATGCAATTCCGTGTTTCGCATCTGCGATCACCCAGCTGTGAATTGaatagtttttttaaatgtttaagtaTGATAAATTATTACGATGAAATATTAGTTGAAATAGGGAGTTTTCAAACAGTGTGAGTGGCCGAGTCAATGAGCAGCAACGTTGCCTGAAACATCAGTGTCCGTCAATGACCAAATACAGCTCAATGTTGTTATGCCAAACTGCTATGAAAAGGCTAAACACAAAAATAAAGAACGTTTGAACTGATT
>XM_021600887.2
gtgaggggtgggggggtagtaGGTGGCGCAAACGTTTGTAAGACAGACAGAGGATCCTCAGTCCACCAGGACAGCTGGGGGTCTCCGATCTGCTTTAAGAGCGCTGGCGGTGCAGGACGAcgctcattttttaaattaacctCACTGCGTAAAGAGCGAGTAACGCCTCCAACGAATAACCAAGGACTTATCCGTATTAACCAAAACCATCCTCGCTCTCTTTCCTGTTGTGTTCTGTTCAGGTTTCGGTAGAAGAATTGAGAAGAATCCAACACTTGAGGACTAAACTAAAAAGGGTACTTTTCAACGCCTTTTTGTTTTCAAAATTCTCTGCAACTTTGCCCTTCAATCGGAGGCTAGAATGATGTCTTATCTGAAGCAGCCTCAGTACACAGTCAACGGTCTGAGTTTGTCTGCCTCAGGAATGGACCTTCTTCATCCGTCTATCGGCTATCCAGGCGCCCCTCGTAAACAGAGGCGCGAGAGGACGACCTTTACGCGCGCCCAGCTGGACATTCTGGAGAACTTGTTCGCCAAGACCCGCTACCCAGACATCTTTATGCGCGAGGAGGTGGCCCTGAAGATCAATTTACCTGAGTCTCGTGTTCAGGTATGGTTTAAAAACCGAAGGGCGAAGTGTCGCCAGCAGGCACAACAGTCCCAGAGCGGTGCGCAGAGCAAGACCAAACCCGTCAAAAAGAGAAGTTCCCCAATGAGAGAAGCCAGCTCCGAGAGCGGTGCCAGCGGACAGTTCACACCGCCTCCCAGCACCTCAATCCCGCTCGTAAACAGCAGTACTGCCCCGGTGTCCATCTGGAGCCCGGCCTCCATCTCCCCACTGTCTGACccactctctacctcttcctcctcttgtATGCAACGGTCCTACCCGATGACCTACACCCAGGCGTCCGGATACAGCCAAGGCTACACCGGATCCTCATCCTATTTCAGCGGGATGGACTGCGGATCTTACTTGGCGCCTATGCACCACCAGCTCTCCGCTGCGGGCTCCACCATGAGCCCCATGAGCAGCAACGGGGTCTCCAGCCACCTGAGCCCGCCTTCGTCCCTCTCCACGCCAGGGTATGGGGCAGCGGGACTGAGTTTCAGTGGTCCCACAGACTGCCTGGATTACAAGGACCAGGCCGCGGCCTGGAAACTCAACTTCAACACGGACTGTTTGGATTACAAAGACCAGTCCTCGTGGAAATTTCAGGTGTTGTGAGAAGAATGAGTGAGTGACATTATATTTTCACAATGTGGTGAAATAAACGTTAGTCAATCCGATGGGATTGAGTCGGCGAAAGGCATCGTTTTCCAATGGCTGGTCCTGGGCATCAAACTATTACCCCGAACAGCAGCAGTGTGAGTGGAGAGAAGCTGCCGCTTCGTCTCTCTGACAGCGTAACAACTGCTGAGTTAACTTATTGAAAATTCAGTGAACTCTCTTTAACTTTGATCAAGGACATGGAACAAAAGTGTTGTCCAAGAAGAAATTGATCAAGAGAAGCTGCAACCCTTGGCTAAGCGCGTGGAATGGGTCAGCTTTCCATAAGCTTCTTACGACTCCCCGATCCTCTCCTCTTGGTTGGCAAACTAAAGGGGCCCTTTGATCAAAGcattgtgtgcgtgcgtgtgcgcgcctGTGAGGCGAACCTGGATGCACTATTTAATTTATGAAAAATGTTTATAAGACACTAGTTCCAACAGACAATCAACAGTATGCGTGTGCTCATAAATGTCCCCTAAGTGTTTTGGCATTTTCTATTTGTGTTAGCTTTTTGAGACTGTGATTCCTTGTACCCGTATGCAATTCCGTGTTTCGCATCTGCGATCACCCAGCTGTGAATTGaatagtttttttaaatgtttaagtaTGATAAATTATTACGATGAAATATTAGTTGAAATAGGGAGTTTTCAAACAGTGTGAGTGGCCGAGTCAATGAGCAGCAACGTTGCCTGAAACATCAGTGTCCGTCAATGACCAAATACAGCTCAATGTTGTTATGCCAAACTGCTATGAAAAGGCTAAACACAAAAATAAAGAACGTTTGAACTGATT

Function

NR:

description
homeobox protein OTX2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09326 OTX1; homeobox protein OTX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976075.1 False 2033 mRNA 0.48 4 29838369 29842910
XM_021600887.2 True 2068 mRNA 0.49 3 29839866 29842910

Neighbor

gene id symbol gene type direction distance location
LOC110522463 LOC106608087 coding upstream 40229 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 111168 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 131568 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 197252 29633676 ~ 29641117 (+)
LOC110522454 LOC105017530 coding upstream 205998 29480176 ~ 29632371 (+)
LOC110522470 prpf39 coding downstream 99266 29942176 ~ 29952127 (+)
LOC110522472 rs30 coding downstream 109551 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 953309 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 973506 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 1326741 31169651 ~ 31182712 (+)
G340182 NA non-coding upstream 11820 29826271 ~ 29826549 (+)
G340155 NA non-coding upstream 35228 29798259 ~ 29803141 (+)
G340153 NA non-coding upstream 67926 29769806 ~ 29770443 (+)
G340125 LOC106608091 non-coding upstream 99968 29737993 ~ 29738401 (+)
G340107 NA non-coding upstream 152763 29685352 ~ 29685606 (+)
G340193 NA non-coding downstream 8330 29851240 ~ 29851549 (+)
G340201 LOC107574485 non-coding downstream 16188 29859098 ~ 29890519 (+)
G340219 LOC106608084 non-coding downstream 40893 29883803 ~ 29887768 (+)
G340225 NA non-coding downstream 50838 29893748 ~ 29894413 (+)
G340224 NA non-coding downstream 52882 29895792 ~ 29896176 (+)
G339928 NA other upstream 501430 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 671373 29166518 ~ 29166996 (+)
G339693 NA other upstream 922830 28914599 ~ 28915539 (+)
G339660 NA other upstream 979214 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2236813 27537262 ~ 27601564 (+)
G342538 NA other downstream 1538916 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1575045 31417955 ~ 31422086 (+)
G342571 NA other downstream 1608223 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1942955 31785865 ~ 31786206 (+)
G343958 NA other downstream 2852076 32694986 ~ 32704371 (+)

Expression


Co-expression Network