LOC110522470 (prpf39)


Basic Information

Item Value
gene id LOC110522470
gene name prpf39
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 29942176 ~ 29952127 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976080.1
TCTTGGTTACGTTGTAGTGAACCCACCCGCATGACACTACAGTACGCATGTGCGTCTACTGTGCCTTTCCTCGAAGTTGTCGCTGGAGAATGAGAGTAGAAACGCGGCTACATGTTGTTGGTTAGATTAGTTTGAAGTATATGAAATACGCATTTGTCTCATCTAATTTTCATGGAAGATACTGACGAGCCCATGACAGGGATGTTGGACACAGACAGCTCTGAGAGTGGGGACTCCCCAGCCATGGAGGGCAACGGAGATGGCTTCCTCCCAGACCTGCCTGTCCTCGCGCACCCTGCTGAATGGACCATGGACCAGGTTCCCCCTGACAACCTCACCACAGTTATCCACGACACTGACTCAGAGTCAGATCAGTCATCACCGGAGGTAGAACAACAGAACCAAATGGAAGCTTTGTCAGAAGAAGAAAGCAAGGAAGGACAGAACAACCAAGAGGATGCCACAGAGTCTCTAATGCAGGGTGAGAAGATGTCAGAGGCTGTAGAACAGCAACAAGATCCAGCCCAAGCCCAGCCACCAATGGTTGCGGAAGATGGAAGCCCAGCTAACATGGAGCTGGAAGAATCCAAAGAGATGACAGAGCAGGGGGAAcctgttgaggtaccagctgaGGAACCAGCTGTCCCCACAGAGCCCCTCATCCCTGCTGAATACGAGAAGCTGGCTAAAGGGTGTGAGGAGAACCCTGAAGACTTCAATGGTTGGGTCTACCTGCTGCAGTATGTGGAGCAAGAGAATCATCTCGGTGTTGTGAGAAAGGCGTTTGATGCGTTTTTCCTGCACTACCCCTACTGCTACGGCTACTGGAAGAAGTTTGCTGATACTGAGAAGAAGCATGGCAATGTGCAGGTGGCAGAGGAGGTGTACCGGCGAGGTGTGCAGGCCATCCCCCTCAGTGTGGATCTGTGGCTTCACTACATGTCCTTCATCAAGGACAACGCTGACCATGAAGACCCAGAGACACCAGGACGCATTAGAGCTGCGTATGAGCATGCTGTGTTGGCAGCAGGGACAGACTTCCGCTCTGACCGTCTATGGGAGGCCTACATCAACTGGGAGATGGAGCAGGAGAAACTGGCTAATGTCACGGCCATCTACGACCGCATCCTGGGCATCCCCACCCAGCTCTACTCACAGCACCTCCAGAGGTTCAAAGAGCATGTGCAGAACAACAACCCCAAACACTTCCTGTCAGAGGAGGAGTTTGTCCAACTGAGGGTGGAGCTAGCCAAAGCCAACGTAGCAGCTGCAGCCAATGGGGAAGGAGAGGACACAACACCTGCCGACGAGCTCCCGCCAGGCACCGAAGACCTCCCAGATCCTGCAAAGAGAGTGACGGAGATTGAGAACATGCGACACAAGGTGATCGAGTCACGCCAGGAGGTGTTCAACCAAAACGAGCAGGAGGTCAGCAAACGCTGGGCCTTCGAGGAAGGGATAAAACGCCCCTACTTCCATGTCAAAGCCCTGGAGAAGACCCAGCTCAGCAATTGGAAGGAGTACCTGGACTATGAGATCGAAAACGGCACTCCCGAACGTGTGGTCGTTCTGTTCGAACGCTGCCTCATCGCCTGTGCTCTTTACGAGGACTTCTGGACAAAGTATGCAAAATATATAGAAGGCTACAGCATTGATGGAGTAAGACATGTGTACAAGAAGGCGTGTACCATCCACCTGACCAAGAAGCCCAACATTCACCTGCTGTGGGCTGCGTTCGAGGAGCAACAGGGGAACATAGCGGAGGCGCGCCGTATCCTGAAGGCTCTGGAGGCTACGGTACCAGCCCTAGCTATGGTGCGTCTGCGGCGGGTCAGCCTGGAGCGGCGCCACGGCAACCTGGAGGAGGCGGAGGCCCTGCTGAGGGAGGCGATTGCGGCGGGGAAGAACACCAGTGAGACGTCGTTCTACGCCGTGAAGCTGGCCCGGCAGCTGCTGAAGGTGCAGAGAAGCCTCGCCAAGGCCCGCAAGGTGCTGCTGGACGCCATAGAAAAGGACCAGGCCAGTGCTAAACTGTATCTGAACCTGCTGGAATTGGAGTACAGTGGGGATGTGCAGCAGAACGAAGCGGACATCTTGGCCTGCTTCGACCGTGCACTGAGCAGCCCGCTGCCCCTCGACTCCCGTCTCACCTTCTCTCAGCGCAAGGTTGAGTTCCTCCAGGACTTTGGCAGCGACATCAACAAGTTAGTGACTGCGTACGATGAACACCAGAAGCTTCTGAAAGAAAACGAGTCGGCAAAGAGGAAAGCGGAGAATGGCTCACAGGAAACCGAATCGAAGAGACAGCGTACAGACGAGCACTCAGGCTCAGGGCACATGATGCAGGGAGATGTGCAGGGTAACAACTCTGCCTACAACTACAACTGGTACCAGCAACAGTACAACAACTGGGGACAGAACTCCTGGGGACAGTACAACCAGTATTCCCAGCAGTATAACCAGTACTACCCCCCTCCACCCACATAAGGTCTTGCAGACCgaaagggagatgagaggaagcaTCTTTCTACCCAGCCCAATTGCTCATCTCAGCTAGCCCCGCCTCCTGTGTGACGTAATTTGTTTCAATTGGCCATTAGATTGGCACATTTACTGTCATCACCATTGTCATTCATTCATTGGCCGGCTGCTTTTTGTGTTGCTTGCACATGTGTTGATGCGGACTTCATTTTCTCAGTTGAAAAAAGCAACGATGTTTTCAATTTTTTGATTGACTGCATAATTTGGTTCCTCTTCGATATCTCAGTGGGGGGAATCTAGTTATGTTTGATACAGATTATATATTTGTATGGaggtagtggtaccagctatgcTCCTCCCTGAGCCTCTTCTCTGCTTtcctaaaatgtgagatttttaaGATGAAGGTTTTTGTTTCCTGGGACAAAAACAGAAATGAATGgaaatgtttgtttatttcataATAAAGAGATGAATATCATA
>XM_021600894.2
CTTGGTTACGTTGTAGTGAACCCACCCGCATGACACTACAGTACGCATGTGCGTCTACTGTGCCTTTCCTCGAAGTTGTCGCTGGAGAATGAGAGTAGAAACGCGGCTACATGTTGTTGGTTAGATTAGTTTGAAGTATATGAAATACGCATTTGTCTCATCTAATTTTCATGGAAGATACTGACGAGCCCATGACAGGGATGTTGGACACAGACAGCTCTGAGAGTGGGGACTCCCCAGCCATGGAGGGCAACGGAGATGGCTTCCTCCCAGACCTGCCTGTCCTCGCGCACCCTGCTGAATGGACCATGGACCAGGTTCCCCCTGACAACCTCACCACAGTTATCCACGACACTGACTCAGAGTCAGATCAGTCATCACCGGAGGTAATCAAGCAGCACCAGGACCAGCAgtctgatctgggatcagttgaACAAGCAGTGCAGCACTTCCAGCTAGCGAGTGCCAAGCTCTTCCAAGAGGAGGATTCAGATGATCAGTTTTGTTCTCCCCAGGTAGAACAACAGAACCAAATGGAAGCTTTGTCAGAAGAAGAAAGCAAGGAAGGACAGAACAACCAAGAGGATGCCACAGAGTCTCTAATGCAGGGTGAGAAGATGTCAGAGGCTGTAGAACAGCAACAAGATCCAGCCCAAGCCCAGCCACCAATGGTTGCGGAAGATGGAAGCCCAGCTAACATGGAGCTGGAAGAATCCAAAGAGATGACAGAGCAGGGGGAAcctgttgaggtaccagctgaGGAACCAGCTGTCCCCACAGAGCCCCTCATCCCTGCTGAATACGAGAAGCTGGCTAAAGGGTGTGAGGAGAACCCTGAAGACTTCAATGGTTGGGTCTACCTGCTGCAGTATGTGGAGCAAGAGAATCATCTCGGTGTTGTGAGAAAGGCGTTTGATGCGTTTTTCCTGCACTACCCCTACTGCTACGGCTACTGGAAGAAGTTTGCTGATACTGAGAAGAAGCATGGCAATGTGCAGGTGGCAGAGGAGGTGTACCGGCGAGGTGTGCAGGCCATCCCCCTCAGTGTGGATCTGTGGCTTCACTACATGTCCTTCATCAAGGACAACGCTGACCATGAAGACCCAGAGACACCAGGACGCATTAGAGCTGCGTATGAGCATGCTGTGTTGGCAGCAGGGACAGACTTCCGCTCTGACCGTCTATGGGAGGCCTACATCAACTGGGAGATGGAGCAGGAGAAACTGGCTAATGTCACGGCCATCTACGACCGCATCCTGGGCATCCCCACCCAGCTCTACTCACAGCACCTCCAGAGGTTCAAAGAGCATGTGCAGAACAACAACCCCAAACACTTCCTGTCAGAGGAGGAGTTTGTCCAACTGAGGGTGGAGCTAGCCAAAGCCAACGTAGCAGCTGCAGCCAATGGGGAAGGAGAGGACACAACACCTGCCGACGAGCTCCCGCCAGGCACCGAAGACCTCCCAGATCCTGCAAAGAGAGTGACGGAGATTGAGAACATGCGACACAAGGTGATCGAGTCACGCCAGGAGGTGTTCAACCAAAACGAGCAGGAGGTCAGCAAACGCTGGGCCTTCGAGGAAGGGATAAAACGCCCCTACTTCCATGTCAAAGCCCTGGAGAAGACCCAGCTCAGCAATTGGAAGGAGTACCTGGACTATGAGATCGAAAACGGCACTCCCGAACGTGTGGTCGTTCTGTTCGAACGCTGCCTCATCGCCTGTGCTCTTTACGAGGACTTCTGGACAAAGTATGCAAAATATATAGAAGGCTACAGCATTGATGGAGTAAGACATGTGTACAAGAAGGCGTGTACCATCCACCTGACCAAGAAGCCCAACATTCACCTGCTGTGGGCTGCGTTCGAGGAGCAACAGGGGAACATAGCGGAGGCGCGCCGTATCCTGAAGGCTCTGGAGGCTACGGTACCAGCCCTAGCTATGGTGCGTCTGCGGCGGGTCAGCCTGGAGCGGCGCCACGGCAACCTGGAGGAGGCGGAGGCCCTGCTGAGGGAGGCGATTGCGGCGGGGAAGAACACCAGTGAGACGTCGTTCTACGCCGTGAAGCTGGCCCGGCAGCTGCTGAAGGTGCAGAGAAGCCTCGCCAAGGCCCGCAAGGTGCTGCTGGACGCCATAGAAAAGGACCAGGCCAGTGCTAAACTGTATCTGAACCTGCTGGAATTGGAGTACAGTGGGGATGTGCAGCAGAACGAAGCGGACATCTTGGCCTGCTTCGACCGTGCACTGAGCAGCCCGCTGCCCCTCGACTCCCGTCTCACCTTCTCTCAGCGCAAGGTTGAGTTCCTCCAGGACTTTGGCAGCGACATCAACAAGTTAGTGACTGCGTACGATGAACACCAGAAGCTTCTGAAAGAAAACGAGTCGGCAAAGAGGAAAGCGGAGAATGGCTCACAGGAAACCGAATCGAAGAGACAGCGTACAGACGAGCACTCAGGCTCAGGGCACATGATGCAGGGAGATGTGCAGGGTAACAACTCTGCCTACAACTACAACTGGTACCAGCAACAGTACAACAACTGGGGACAGAACTCCTGGGGACAGTACAACCAGTATTCCCAGCAGTATAACCAGTACTACCCCCCTCCACCCACATAAGGTCTTGCAGACCgaaagggagatgagaggaagcaTCTTTCTACCCAGCCCAATTGCTCATCTCAGCTAGCCCCGCCTCCTGTGTGACGTAATTTGTTTCAATTGGCCATTAGATTGGCACATTTACTGTCATCACCATTGTCATTCATTCATTGGCCGGCTGCTTTTTGTGTTGCTTGCACATGTGTTGATGCGGACTTCATTTTCTCAGTTGAAAAAAGCAACGATGTTTTCAATTTTTTGATTGACTGCATAATTTGGTTCCTCTTCGATATCTCAGTGGGGGGAATCTAGTTATGTTTGATACAGATTATATATTTGTATGGaggtagtggtaccagctatgcTCCTCCCTGAGCCTCTTCTCTGCTTtcctaaaatgtgagatttttaaGATGAAGGTTTTTGTTTCCTGGGACAAAAACAGAAATGAATGgaaatgtttgtttatttcataATAAAGAGATGAATATCATA

Function

symbol description
prpf39 Predicted to be involved in mRNA 5'-splice site recognition. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U1 snRNP; U2-type prespliceosome; and commitment complex. Orthologous to human PRPF39 (pre-mRNA processing factor 39).

NR:

description
pre-mRNA-processing factor 39-like

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976080.1 False 2964 mRNA 0.52 16 29942176 29952127
XM_021600894.2 True 3092 mRNA 0.52 15 29942177 29952127

Neighbor

gene id symbol gene type direction distance location
LOC110522467 LOC106608085 coding upstream 99266 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 144036 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 214975 29717778 ~ 29727201 (+)
LOC110522458 mmsa coding upstream 235375 29686032 ~ 29706801 (+)
LOC110522456 LOC106608096 coding upstream 301059 29633676 ~ 29641117 (+)
LOC110522472 rs30 coding downstream 334 29952461 ~ 29957558 (+)
LOC110522479 NA coding downstream 844092 30796219 ~ 30797687 (+)
LOC110522477 mgat2 coding downstream 864289 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 1217524 31169651 ~ 31182712 (+)
ppp2r5cb LOC106608134 coding downstream 1235099 31187226 ~ 31227364 (+)
G340247 NA non-coding upstream 2060 29939828 ~ 29940116 (+)
G340245 NA non-coding upstream 8302 29933621 ~ 29933874 (+)
G340244 NA non-coding upstream 8781 29933158 ~ 29933395 (+)
G340243 NA non-coding upstream 9481 29932476 ~ 29932695 (+)
G340242 NA non-coding upstream 9873 29931825 ~ 29932303 (+)
G340258 NA non-coding downstream 20035 29972162 ~ 29972386 (+)
G340259 NA non-coding downstream 21220 29973347 ~ 29974350 (+)
G340260 NA non-coding downstream 23015 29975142 ~ 29975459 (+)
G340263 NA non-coding downstream 25948 29978075 ~ 29978330 (+)
G340267 NA non-coding downstream 36268 29988395 ~ 29989043 (+)
G339928 NA other upstream 605237 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 775180 29166518 ~ 29166996 (+)
G339693 NA other upstream 1026637 28914599 ~ 28915539 (+)
G339660 NA other upstream 1083021 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 2340620 27537262 ~ 27601564 (+)
G342538 NA other downstream 1429699 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 1465828 31417955 ~ 31422086 (+)
G342571 NA other downstream 1499006 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 1833738 31785865 ~ 31786206 (+)
G343958 NA other downstream 2742859 32694986 ~ 32704371 (+)

Expression


Co-expression Network