LOC110522479


Basic Information

Item Value
gene id LOC110522479
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 30796219 ~ 30797687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473324.2
ACTACCTAGCCAGGGTCTCTCTGACTGCTCTGCTGCAATGTGTCTTAATCTCACACCTGTCTGTCGACGCTGCAGGCATGAATCTCTTTGCTTACCCCACAGGGGCGGGTGGCGACTAGCTATGTAAGAGAGCTTCAAATGATTCCTCATAGGTATTAAAATGCATAGGCTATCTagctatggcaagacatgaaaaaacacatgaagaaaatgaacaacttaCATAACCGTAGCAATTCAATGGCTGTCGTTTTGACAAGAGGCTCGTGTCAGTCCCCATTGAAATAACAACTCTGGAATAGATCTCTTCAGTGAGGCAAAGCTATTTCAGAAATGCAGCTTAAGAAGCTCTTGATCCAGGCGTCCTTGAGTTTGGGCTCCTGCTTCATAAAACATCCTCCACCAACAAGCAGCGACAGGTCGCCATGGTGGGGCATCGTGAGTGTGTGCAAGAGGGAAGGCATTTCCATGGTGATCGGCGGCTGGCTGACCTGCATTTCAAATACAAACGCATGCGTCTATTCTGATATAACCTACATTTCCTGGGAAAGGATCCTGGCCTCTTCTACCCTGGAATCACAAAGCTGTCACTGCAGTCTTCCATGAATAATCTCCGGACTCTCAATGGCAGAGATGTTGTCACGGAAACCAGTCTGGCAGCCACTTTAGAACCGTCAACATGCATGACAGCTAATTTTCTACCCTgaatttttttacttttaaatgaATTAAATAGCCATTGATTCTCAAAGAATATGACATAAATGTCTAACAAGCTTAGTTGAACTGTCTTACCCATCAGAACCCCAACTATATGCTTGCTTTAGACAATTGTTTGTAAACCAAATCATTGTAAACAAtgtatagcttcaaaacatgATTAAAACTATGATTTTGATCTCTTGTatagtcagtccttgcatccatagctccatct
>XR_002473325.2
ACTACCTAGCCAGGGTCTCTCTGACTGCTCTGCTGCAATGTGTCTTAATCTCACACCTGTCTGTCGACGCTGCAGGCATGAATCTCTTTGCTTACCCCACAGGGGCGGGTGGCGACTAGCTATGTAAGAGAGCTTCAAATGATTCCTCATAGGTATTAAAATGCATAGGCTATCTagctatggcaagacatgaaaaaacacatgaagaaaatgaacaacttaCATAACCGTAGCAATTCAATGGCTGTCGTTTTGACAAGAGGCTCGTGTCAGTCCCCATTGAAATAACAACTCTGGAATAGATCTCTTCAGTGAGGCAAAGCTATTTCAGAAATGCAGCTTAAGAAGCTCTTGATCCAGGCGTCCTTGAGTTTGGGCTCCTGCTTCATAAAACATCCTCCACCAACAAGCAGCGACAGGTCGCCATGGTGGGGCATCGTGAGTGTGTGCAAGAGGGAAGGCATTTCCATGGTGATCGGCGGCTGGCTGACCTGCATTTCAAATACAAACGCATGCGTCTATTCTGATATAACCTACATTTCCTGGGAAAGGATCCTGGCCTCTTCTACCCTGGAATCACAAAGCTGTCACTGCAGTCTTCCATGTTGAAATTTAGACAAGAGAACAACGCCTCCTTATGCCTTTCCCTCAGGAATAATCTCCGGACTCTCAATGGCAGAGATGTTGTCACGGAAACCAGTCTGGCAGCCACTTTAGAACCGTCAACATGCATGACAGCTAATTTTCTACCCTgaatttttttacttttaaatgaATTAAATAGCCATTGATTCTCAAAGAATATGACATAAATGTCTAACAAGCTTAGTTGAACTGTCTTACCCATCAGAACCCCAACTATATGCTTGCTTTAGACAATTGTTTGTAAACCAAATCATTGTAAACAAtgtatagcttcaaaacatgATTAAAACTATGATTTTGATCTCTTGTatagtcagtccttgcatccatagctccatctatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473324.2 False 937 mRNA 0.43 3 30796219 30797684
XR_002473325.2 True 988 mRNA 0.43 3 30796219 30797687

Neighbor

gene id symbol gene type direction distance location
LOC110522472 rs30 coding upstream 838661 29952461 ~ 29957558 (+)
LOC110522470 prpf39 coding upstream 844092 29942176 ~ 29952127 (+)
LOC110522467 LOC106608085 coding upstream 953309 29838369 ~ 29842910 (+)
LOC110522463 LOC106608087 coding upstream 998079 29787568 ~ 29798140 (+)
LOC110522461 LOC106608092 coding upstream 1069018 29717778 ~ 29727201 (+)
LOC110522477 mgat2 coding downstream 18729 30816416 ~ 30823059 (+)
LOC110522488 hs90a coding downstream 371964 31169651 ~ 31182712 (+)
ppp2r5cb LOC106608134 coding downstream 389539 31187226 ~ 31227364 (+)
slc25a29 LOC106608124 coding downstream 594492 31392179 ~ 31401929 (+)
LOC110522495 NA coding downstream 611601 31408651 ~ 31412134 (+)
G341880 NA non-coding upstream 42015 30753318 ~ 30754204 (+)
G341878 NA non-coding upstream 44473 30751084 ~ 30751746 (+)
G341781 NA non-coding upstream 49904 30724762 ~ 30746315 (+)
G341339 NA non-coding upstream 311702 30482577 ~ 30484517 (+)
G341235 NA non-coding upstream 473969 30322043 ~ 30322250 (+)
G341912 NA non-coding downstream 2608 30800295 ~ 30802694 (+)
G341914 NA non-coding downstream 7706 30805393 ~ 30805615 (+)
G341909 NA non-coding downstream 15911 30813598 ~ 30814599 (+)
G341921 NA non-coding downstream 27866 30825553 ~ 30826284 (+)
G341922 NA non-coding downstream 28863 30826550 ~ 30826954 (+)
G339928 NA other upstream 1459280 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 1629223 29166518 ~ 29166996 (+)
G339693 NA other upstream 1880680 28914599 ~ 28915539 (+)
G339660 NA other upstream 1937064 28858716 ~ 28859155 (+)
LOC118964415 LOC106608050 other upstream 3194663 27537262 ~ 27601564 (+)
G342538 NA other downstream 584139 31381826 ~ 31382749 (+)
LOC110522493 LOC106608104 other downstream 620268 31417955 ~ 31422086 (+)
G342571 NA other downstream 653446 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 988178 31785865 ~ 31786206 (+)
G343958 NA other downstream 1897299 32694986 ~ 32704371 (+)

Expression


Co-expression Network