LOC110522493 (LOC106608104)


Basic Information

Item Value
gene id LOC110522493
gene name LOC106608104
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 31417955 ~ 31422086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600924.2
GGCCTGTTGTGATAGAATTGATGTCATCATCCTTGCACATCAACTTCAAATCGAAGAAGAGGGTATTAGCCAATCTAAGAAGTGAAGTCTGGTTCGTAAAAACAAGACAAATCCAACACCACACAGAACAGAGAAAGAAACGGTTACGGAAGGCAGAGCAAGAGCAACATGGCTGGGGCCCATCACACTCTCATTCCACTGCTGATCCTAAAGCTTATCAATGCAGGTGTGCATGGAAAACAATTATCTCAATACGTCAATGAGGGGGCTGATGTCAGTCTGCTGTGTGACAATGTGGTTAATTCAGACTGCTCCTTAATTATGTGGCTTCACAGCAGAGAGAGTTTTCTAAATGCTATTCAAGAGGTTTTTAACGGGAAGGTGAGCGTTAACTCAAAGAGAGCTAAAAAACTGAGTGTGGACGCTGACTGTTCTCTACATATTCACAATGTCACAGCTGAGGATGCTGGACGCTACACATGTCGAATTTTAAAACACCAAAATCCCTTTTCAGACACTGATACCTATCTGTCTGTTCTAACCATCTTCTTGTCCACACTACTGACATATCTAAAGCCTGATAGACCAGTAACAATAAGGTGCTCTCTGCACACCAATGAAGGACCTGGAAACTGTAGGTTATTTCTCAATAGTGAAGTTCATCTGAGCTGGATGGATGAGACTGGTCGGAAGCTGCAGGGAGACTCCAGATACCAGCTCACAGGGCCTCGCTGTGACATCACTCTGAATATGACATTCCAGAAGGAGGACAACAACAGGAAGTGGACGTGCACGCTGACAGACAAGGGAAAAGTGAAgatctccattgacttcacattCTCAGATATTAAAGACACGGATGATGACGGTGGAGAGGAAAATGACGGTCTTAAACAGTCGCTGCTGATCTGGGTGCCAatgggggtggtggtgtgtgtggctgtgtgtgtggccgCAGTCACCTTCAGAAGGAGGGCGTATTATGTTTCAGGAAATCAGATGGCAGTCAACCCAGGAAATATGGTGCAAGCAAACAACAGGGATgaccaGAGAGCAGACATGACCTATGCTGAGGTCAACCTTCCCACTAGTAGGAGGGTGGTGGAGAAAGACCAACAGACAGAGTATGCAACCATCAGAACATGACCCTGAATCATAAACTGTTCCGTATTGAGGCTGTAAAGAAGTGGTATTCAAATCCTACCCTGCAGGTCTGGAGTACTGTTGGCTTTCTGGAATACCCGGTGTCCTGGGTCTAAATGAAACTAATAAGAatggaactggcttcaaggtccacattttaatttgatttgatttgatttgatttgacattttaaTTTGAGGGGCTATGAAGTGGAGATGTAAGAACTGCACGGTTC
>TU387623
GTAGCCATCCTTTTGATGTAGCCAGCCTTTTGATGTAGCCATCCTTTTGATGTAGCCATCCTTTTGATGTAGCCATCCTTTTGATCTTCTATTTGAGGTTGGTGATGTGGGAATGTCCAGCACAGTCAGATGCTGATgggagaatggctcataatagTGGCTGGAagggaAACAGAGAAAGAAACGGTTACGGAAGGCAGAGCAAGAGCAACATGGCTGGGGCCCATCACACTCTCATTCCACTGCTGATCCTAAAGCTTATCAATGCAGGTGTGCATGGAAAACAATTATCTCAATACGTCAATGAGGGGGCTGATGTCAGTCTGCTGTGTGACAATGTGGTTAATTCAGACTGCTCCTTAATTATGTGGCTTCACAGCAGAGAGAGTTTTCTAAATGCTATTCAAGAGGTTTTTAACGGGAAGGTGAGCGTTAACTCAAAGAGAGCTAAAAAACTGAGTGTGGACGCTGACTGTTCTCTACATATTCACAATGTCACAGCTGAGGATGCTGGACGCTACACATGTCGAATTTTAAAACACCAAAATCCCTTTTCAGACACTGATACCTATCTGTCTGTTCTAACCAGTGAGTATTACAGTAAAGTAAAACATAAAGTAAAACATATgcaatacagtattatac
>TU387625
GGTCTTAAACAGTCGCTGCTGATCTGGGTGCCAatgggggtggtggtgtgtgtggctgtgtgtgtggccgCAGTCACCTTCAGAAGGAGGGCGTATTATGTTTCAGGAAATCAGATGGCAGTCAACCCAGGAAATATGGTGCAAGCAAACAACAGGGATgaccaGAGAGCAGACATGACCTATGCTGAGGTCAACCTTCCCACTAGTAGGAGGGTGGTGGAGAAAGACCAACAGACAGAGTATGCAACCATCAGAACATGACCCTGAATCATAAACTGTTCCGTATTGAGGCTGTAAAGAAGTGGTATTCAAATCCTACCCTGCAGGTCTGGAGTACTGTTGGCTTTCTGGAATACCCGGTGTCCTGGGTCTAAATGAAACTAATAAGAatggaactggcttcaaggtccacattttaatttgatttgatttgatttgatttgacattttaaTTTGAGGGGCTATGAAGTGGAGATGTAAGAACTGCACGGTTCCCTTGAAATAAACTTTCTGAGTTAAGCTA

Function

NR:

description
uncharacterized protein LOC110522493

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600924.2 False 1379 mRNA 0.45 7 31418466 31422057
TU387623 False 645 TUCP 0.42 4 31417955 31419256
TU387625 True 523 lncRNA 0.45 3 31421187 31422086

Neighbor

gene id symbol gene type direction distance location
LOC110522495 NA coding upstream 6332 31408651 ~ 31412134 (+)
slc25a29 LOC106608124 coding upstream 16537 31392179 ~ 31401929 (+)
ppp2r5cb LOC106608134 coding upstream 191102 31187226 ~ 31227364 (+)
LOC110522488 hs90a coding upstream 235754 31169651 ~ 31182712 (+)
LOC110522477 mgat2 coding upstream 595407 30816416 ~ 30823059 (+)
LOC110521075 NA coding downstream 760 31422817 ~ 31455326 (+)
LOC118964493 NA coding downstream 33957 31456014 ~ 31459259 (+)
LOC110522497 sn25a coding downstream 48091 31470148 ~ 31505600 (+)
LOC110521077 LOC106608119 coding downstream 185808 31607865 ~ 31623080 (+)
LOC110521078 LOC106608118 coding downstream 210611 31632668 ~ 31749603 (+)
G342515 NA non-coding upstream 11204 31405040 ~ 31407262 (+)
G342540 NA non-coding upstream 32665 31385544 ~ 31385801 (+)
G342539 NA non-coding upstream 32996 31384964 ~ 31385470 (+)
G342537 NA non-coding upstream 37097 31380954 ~ 31381369 (+)
G342564 NA non-coding downstream 15201 31437258 ~ 31437485 (+)
G342570 NA non-coding downstream 28559 31450616 ~ 31450904 (+)
G342574 NA non-coding downstream 37629 31459686 ~ 31459901 (+)
G342576 NA non-coding downstream 41020 31463077 ~ 31463954 (+)
G342538 NA other upstream 35717 31381826 ~ 31382749 (+)
G339928 NA other upstream 2081527 29335369 ~ 29336939 (+)
G339830 LOC100846954 other upstream 2251470 29166518 ~ 29166996 (+)
G339693 NA other upstream 2502927 28914599 ~ 28915539 (+)
G339660 NA other upstream 2559311 28858716 ~ 28859155 (+)
G342571 NA other downstream 29076 31451133 ~ 31451476 (+)
G342707 LOC106608120 other downstream 363808 31785865 ~ 31786206 (+)
G343958 NA other downstream 1272929 32694986 ~ 32704371 (+)
LOC110521085 LOC100380634 other downstream 2049995 33469529 ~ 33489784 (+)
G344647 NA other downstream 2130070 33552127 ~ 33554003 (+)
LOC110522493 LOC106608104 other upstream 1931 31417955 ~ 31422086 (+)

Expression


Co-expression Network